View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_25 (Length: 333)
Name: NF4205_low_25
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 4 - 322
Target Start/End: Original strand, 42063121 - 42063439
Alignment:
| Q |
4 |
aaccatatcaactccccgtaaggtgaaaccaaagcagcagtaagcttttcagatgtttcagagacgcgtagtgcagagtgaactgcgtccgctttaccgg |
103 |
Q |
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| T |
42063121 |
aaccatttcaactccccttcaggtgaaaccaatgcagcaggaagcttttcagatgtttcagatccgcgtagtgcagagtgaactgcatccgctttgccgg |
42063220 |
T |
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| Q |
104 |
taccagtcaccacaagagcaatgtaagcagaggaattgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggt |
203 |
Q |
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| T |
42063221 |
taccagtcaccacaagagcaatgtaagcagaggaattgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggt |
42063320 |
T |
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| Q |
204 |
gacccattttttattctcatggacaagagggtgacctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttgga |
303 |
Q |
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| T |
42063321 |
aacccattttttattctcatggacaagagggtgacctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttgga |
42063420 |
T |
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| Q |
304 |
aatccactggctgatgatg |
322 |
Q |
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| T |
42063421 |
aatccactggctgatgatg |
42063439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 138 - 319
Target Start/End: Original strand, 9514335 - 9514516
Alignment:
| Q |
138 |
attgatcacgggaaaggtaaatgttattctctctgggggtggttttggcgagtcgttaattgaggtgacccattttttattctcatggacaagagggtga |
237 |
Q |
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||||||||| ||||| || || || |||||||||| ||||||||||| ||||| | | | || |||||||| | || ||| |||| ||||| ||| |
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| T |
9514335 |
attgatcactggaaaagtgaaagtaattctctctgatggtggttttggtgagtcagtgaggaaagtaacccatttctgatcctcttggagaagagcatga |
9514434 |
T |
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| Q |
238 |
cctgggaacagagaagctacatgcccatcaggacccatgccaagcaacatgagatcaaattttggaaatccactggctgatg |
319 |
Q |
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| T |
9514435 |
cctgggaataaagatgcaacatgtccatccggacccatacctaggagcatgagatcaaattttggtaatccattggttgatg |
9514516 |
T |
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