View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_26 (Length: 319)
Name: NF4205_low_26
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 72 - 303
Target Start/End: Original strand, 34327154 - 34327385
Alignment:
| Q |
72 |
taacaaccctggtagaacagaacccacttccacatcaataacatcaacacaaaacaacaacccagttcttatttaacagaatataaatcaatcaaagaat |
171 |
Q |
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||||||||| || |||||| || |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
34327154 |
taacaaccccggaagaacaaaatccacttccacatcaataacatcaacacaaaacaacaactcagttctcgtttaacagaatataaatcaatcaaagaat |
34327253 |
T |
|
| Q |
172 |
tccataaaacacaaccaacataaacaaattaaccaacatagccctcatcatcctcataatcttcataaagagcccgaaaaaattccagcaattcatcaaa |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||| |
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| T |
34327254 |
tccataaaacacaaccaacataaacaaattaaccaacatagccctcatcatcctcataaccttcataaaaagtccgaaaaaattccagcaattcatcaaa |
34327353 |
T |
|
| Q |
272 |
ctttataatgatctcattctcttaatacattt |
303 |
Q |
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||||||||| |||||||||||||||||||||| |
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| T |
34327354 |
ctttataattatctcattctcttaatacattt |
34327385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 72 - 303
Target Start/End: Original strand, 40723682 - 40723913
Alignment:
| Q |
72 |
taacaaccctggtagaacagaacccacttccacatcaataacatcaacacaaaacaacaacccagttcttatttaacagaatataaatcaatcaaagaat |
171 |
Q |
| |
|
||||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
40723682 |
taacaaccccggaagaacaaaactcacttccacatcaataacatcaacacaaaacaacaacccaactctcatttaacagaatataaatcaatcaaagaat |
40723781 |
T |
|
| Q |
172 |
tccataaaacacaaccaacataaacaaattaaccaacatagccctcatcatcctcataatcttcataaagagcccgaaaaaattccagcaattcatcaaa |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||| |
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| T |
40723782 |
tccataaaacacaaccaacataaacaaattaaccaacataaccctcatcatcctcataatcttcataaaaagctcgaaaaaatttcagcaattcatcaaa |
40723881 |
T |
|
| Q |
272 |
ctttataatgatctcattctcttaatacattt |
303 |
Q |
| |
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||||||||| |||||||||||||||||||||| |
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| T |
40723882 |
ctttataattatctcattctcttaatacattt |
40723913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 72 - 301
Target Start/End: Complemental strand, 48096698 - 48096469
Alignment:
| Q |
72 |
taacaaccctggtagaacagaacccacttccacatcaataacatcaacacaaaacaacaacccagttcttatttaacagaatataaatcaatcaaagaat |
171 |
Q |
| |
|
||||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
48096698 |
taacaaccccggaagaacaaaactcacttccacatcaataacatcaacacaaaacaacaacccaactctcatttaacagaatataaatcaatcaaagaat |
48096599 |
T |
|
| Q |
172 |
tccataaaacacaaccaacataaacaaattaaccaacatagccctcatcatcctcataatcttcataaagagcccgaaaaaattccagcaattcatcaaa |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
48096598 |
tccataaaacacaaccaacataaacaaattaaccaacataaccctcatcatcctcataatcttcataaaaagcccgaaaaaatttcagcaattcatcaaa |
48096499 |
T |
|
| Q |
272 |
ctttataatgatctcattctcttaatacat |
301 |
Q |
| |
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||||||||| |||||||||||||||||||| |
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|
| T |
48096498 |
ctttataattatctcattctcttaatacat |
48096469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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