View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_27 (Length: 318)
Name: NF4205_low_27
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 33 - 265
Target Start/End: Complemental strand, 11559056 - 11558827
Alignment:
| Q |
33 |
ataactaacaccgaactggagcagtgcctcctgcgttttttgtatgttgcgttgtccaatgcgatatcacgtgcgagtctctgttgataataaatagaaa |
132 |
Q |
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| T |
11559056 |
ataactaacaccgaactggagcagtgcctcctgcgttttttgtatgttgcgttgtctaatgcgatatcacgtgcgaatctctgttgataataaatagaaa |
11558957 |
T |
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| Q |
133 |
aattgcaagtgttgttaaaatatttgattttattatttctgtttaacgatgttctctcaacaaacaaaaaagtgtaacgatatttgtagccgagttgttt |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
11558956 |
aattgcaagtgttgttaaaatatttgattttattatttctgtttaacgaggttctctcaacaaacaaaaaggtgtaacgatatttgtagccga---gttt |
11558860 |
T |
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| Q |
233 |
agatcataagatccttggtagttggtatactct |
265 |
Q |
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| T |
11558859 |
agatcataagatccttggtatttggtatactct |
11558827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 33 - 265
Target Start/End: Complemental strand, 11568325 - 11568096
Alignment:
| Q |
33 |
ataactaacaccgaactggagcagtgcctcctgcgttttttgtatgttgcgttgtccaatgcgatatcacgtgcgagtctctgttgataataaatagaaa |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11568325 |
ataactaacaccgaactggagcagtgcctcctgcgttttttgtatgttgcgttgtctaatgcgatatcacgtgcgaatctctgttgataataaatagaaa |
11568226 |
T |
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| Q |
133 |
aattgcaagtgttgttaaaatatttgattttattatttctgtttaacgatgttctctcaacaaacaaaaaagtgtaacgatatttgtagccgagttgttt |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
11568225 |
aattgcaagtgttgttaaaatatttgattttattatttctgtttaacgaggttctctcaacaaacaaaaaggtgtaacgatatttgtagccga---gttt |
11568129 |
T |
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| Q |
233 |
agatcataagatccttggtagttggtatactct |
265 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
11568128 |
agatcataagatccttggtatttggtatactct |
11568096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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