View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4205_low_29 (Length: 299)

Name: NF4205_low_29
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4205_low_29
NF4205_low_29
[»] chr8 (6 HSPs)
chr8 (149-290)||(14504630-14504771)
chr8 (150-290)||(15991499-15991639)
chr8 (149-288)||(27977634-27977773)
chr8 (149-288)||(28034903-28035042)
chr8 (170-235)||(14658854-14658919)
chr8 (4-49)||(42043382-42043427)
[»] chr4 (3 HSPs)
chr4 (149-290)||(30858271-30858412)
chr4 (149-290)||(55226521-55226662)
chr4 (153-248)||(14262934-14263029)
[»] chr3 (12 HSPs)
chr3 (149-290)||(6007125-6007266)
chr3 (149-290)||(17789061-17789202)
chr3 (149-290)||(19097503-19097644)
chr3 (149-290)||(31227147-31227288)
chr3 (151-254)||(49641514-49641617)
chr3 (149-275)||(31934155-31934281)
chr3 (149-275)||(31950813-31950939)
chr3 (161-233)||(16740595-16740667)
chr3 (149-275)||(31662096-31662222)
chr3 (149-275)||(31972390-31972516)
chr3 (149-290)||(31808053-31808194)
chr3 (151-283)||(36789390-36789522)
[»] chr5 (3 HSPs)
chr5 (149-288)||(22291285-22291424)
chr5 (148-290)||(28245165-28245307)
chr5 (172-233)||(2158942-2159003)
[»] chr7 (4 HSPs)
chr7 (149-282)||(3206227-3206360)
chr7 (169-290)||(41600345-41600466)
chr7 (149-290)||(8119907-8120048)
chr7 (172-233)||(13016127-13016188)
[»] chr6 (4 HSPs)
chr6 (151-290)||(16883984-16884123)
chr6 (151-225)||(10909422-10909496)
chr6 (172-233)||(26906445-26906506)
chr6 (149-290)||(9958118-9958259)
[»] chr2 (5 HSPs)
chr2 (151-290)||(23763615-23763754)
chr2 (151-290)||(23792786-23792925)
chr2 (151-254)||(44885188-44885291)
chr2 (149-289)||(11501214-11501354)
chr2 (161-233)||(23378826-23378898)
[»] scaffold0420 (1 HSPs)
scaffold0420 (149-226)||(14750-14827)
[»] scaffold0252 (1 HSPs)
scaffold0252 (149-290)||(6810-6951)
[»] chr1 (1 HSPs)
chr1 (149-290)||(21703866-21704007)
[»] scaffold0011 (1 HSPs)
scaffold0011 (151-254)||(192148-192251)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 14504630 - 14504771
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  14504630 ataattttactgttaacagcttgatgaatttatatgataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcccacaaaatact 14504729  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14504730 acatacgccattgatttctcaggttgacgaggatagaattat 14504771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 150 - 290
Target Start/End: Complemental strand, 15991639 - 15991499
Alignment:
Q  150 taattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatacta 249  Q
    ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15991639 taattttaccgttaacagcttgatgaatttatatgaaaaaacctggaatgaacaggtggttagaaaagtttttagtgatgatatagcaaacaaaatacta 15991540  T
Q  250 catacgccattgatttctcaggttgacgaggatagaattat 290  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  15991539 catacgccattgatttctcaagttgacgaggatagaattat 15991499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 27977634 - 27977773
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| ||  ||||||||||| || | |||| |||||||||  ||||||||||| || ||||||| |  ||||| ||| | ||||||||    
T  27977634 ataattttactattaatagtctgatgaatttacatgacaaaagctggaatgagtaggtggttagataattttttagcgtggatattgcagataaaatact 27977733  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaatt 288  Q
     || | ||||   |||||||||||||| || |||||||||    
T  27977734 tcacaagccacctatttctcaggttgaggaagatagaatt 27977773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 28034903 - 28035042
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| ||  ||||||||||| || | |||| |||||||||  ||||||||||| || ||||||| |  ||||| ||| | ||||||||    
T  28034903 ataattttactattaatagtctgatgaatttacatgacaaaagctggaatgagtaggtggttagataattttttagcgtggatattgcagataaaatact 28035002  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaatt 288  Q
     || | ||||   |||||||||||||| || |||||||||    
T  28035003 tcacaagccacctatttctcaggttgaggaagatagaatt 28035042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 14658919 - 14658854
Alignment:
Q  170 tgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatag 235  Q
    |||||| ||| ||| ||||||  ||||||||||||||||||||||| || ||||||| ||||||||    
T  14658919 tgatgagtttgtatgataaaagttggaatgaacaggtggttagacaggtgtttagtgctgatatag 14658854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 42043427 - 42043382
Alignment:
Q  4 ttttggatatgctataagttgtattcataagctttcttagataact 49  Q
    ||||||||||| |||||||||| |||||||||| ||||||| ||||    
T  42043427 ttttggatatgatataagttgttttcataagctatcttagagaact 42043382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 30858271 - 30858412
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30858271 ataattttactgttaacagcttgatgaatttatatgataaaacatggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaagtact 30858370  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  30858371 acatacgccattgatttctcaggttgacgaggatagaattat 30858412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 55226521 - 55226662
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55226521 ataattttactgttaacagcttgatgaatttatatgataaaatctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 55226620  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaattat 290  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  55226621 acatacgccactgatttctcaggttgacgaggatagaattat 55226662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 248
Target Start/End: Original strand, 14262934 - 14263029
Alignment:
Q  153 ttttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||| | |||||| | ||||||||  || ||||||  |||||||| || || |||||||||||||||||||| ||||| |||||  |||||||    
T  14262934 ttttactataaacagcctcatgaatttgcatgataaaagttggaatgagcacgtcgttagacaagtttttagtgaggatattgcaaatcaaatact 14263029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 149 - 290
Target Start/End: Complemental strand, 6007266 - 6007125
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  6007266 ataattttactgttaacagcttgatgaatttatatgataaaacctggaatgaacaggtgattagacaagtttttagtgatgatatagcaaacaaagtact 6007167  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaattat 290  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6007166 acatacgccattgatttctcaggttgacgaggatagaattat 6007125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 17789061 - 17789202
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17789061 ataattttactgttaacagcttgatgaatttatatgataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaataaaatact 17789160  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaattat 290  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  17789161 acatacgccactgatttctcaggttgacgaggatagaattat 17789202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 19097503 - 19097644
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19097503 ataattttactgttaacagcttgatgaatttatatgataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaataaaatact 19097602  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaattat 290  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  19097603 acatacgccactgatttctcaggttgacgaggatagaattat 19097644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 31227147 - 31227288
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31227147 ataattttactgttaacagcttgatgaatttttatgagaaaacctggaatgaacaggtggttagacaaatttttagtgatgatatagcaaacaaaatact 31227246  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaattat 290  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  31227247 acatacgccactgatttctcaggttgacgaggatagaattat 31227288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 49641514 - 49641617
Alignment:
Q  151 aattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatactac 250  Q
    ||||||||| |||| |||||||||||||| ||| | |||| |||||||||||||||| ||| |||||| ||||||  |||||||||| | |||||||| |    
T  49641514 aattttactattaatagcttgatgaatttgtatgacaaaagctggaatgaacaggtgattaaacaagtgtttagtactgatatagcagataaaatacttc 49641613  T
Q  251 atac 254  Q
    ||||    
T  49641614 atac 49641617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 31934155 - 31934281
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| ||||||||||||||| || | |||| ||||||||| ||||||||| |||| || ||||| |  ||||| ||| | ||||||||    
T  31934155 ataattttactattaatagcttgatgaatttacatgacaaaagctggaatgagcaggtggttcgacaggtatttagcgtggatattgcagataaaatact 31934254  T
Q  249 acatacgccattgatttctcaggttga 275  Q
     ||||||||| | || |||||||||||    
T  31934255 tcatacgccacttatctctcaggttga 31934281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 31950813 - 31950939
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| ||||||||||||||| || | |||| ||||||||| ||||||||| |||| || ||||| |  ||||| ||| | ||||||||    
T  31950813 ataattttactattaatagcttgatgaatttacatgacaaaagctggaatgagcaggtggttcgacaggtatttagcgtggatattgcagataaaatact 31950912  T
Q  249 acatacgccattgatttctcaggttga 275  Q
     ||||||||| | || |||||||||||    
T  31950913 tcatacgccacttatctctcaggttga 31950939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 233
Target Start/End: Complemental strand, 16740667 - 16740595
Alignment:
Q  161 ttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatat 233  Q
    ||||||| || |||||||||||| |||||| |||||||||||||||| ||||||| |||||||||| ||||||    
T  16740667 ttaacagtttaatgaatttatatgataaaagctggaatgaacaggtgattagacaggtttttagtggtgatat 16740595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 31662222 - 31662096
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| | ||||||||||||| || | |||| ||||||||| ||||||||| |||| || ||||| |  ||||| ||| | ||||||||    
T  31662222 ataattttactattaataacttgatgaatttacatgacaaaagctggaatgagcaggtggttcgacaggtatttagcgtggatattgcagataaaatact 31662123  T
Q  249 acatacgccattgatttctcaggttga 275  Q
     ||||||||| | || |||||||||||    
T  31662122 tcatacgccacttatctctcaggttga 31662096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 275
Target Start/End: Original strand, 31972390 - 31972516
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| |||||||| |||||| || | |||| ||||||||| ||||||||| |||| || ||||| |  ||||| ||| | |||| |||    
T  31972390 ataattttactattaatagcttgattaatttacatgacaaaagctggaatgagcaggtggttcgacaggtatttagcgtggatattgcagataaaaaact 31972489  T
Q  249 acatacgccattgatttctcaggttga 275  Q
     |||| |||| | || |||||||||||    
T  31972490 tcatatgccacttatctctcaggttga 31972516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 31808053 - 31808194
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| ||  ||| ||||||  || | |||| ||||||||| ||||| ||||||||  ||||||| |  ||||| ||| | ||||||||    
T  31808053 ataattttactattaatagtctgacgaatttgcatgacaaaagctggaatgagcaggtagttagacagatttttagcgtggatattgcagataaaatact 31808152  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaattat 290  Q
     ||||||||| | |||||||| ||| | || |||||||||||    
T  31808153 tcatacgccacttatttctcaagttaaggaagatagaattat 31808194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 283
Target Start/End: Original strand, 36789390 - 36789522
Alignment:
Q  151 aattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatactac 250  Q
    ||||||||  |||| || ||||||||||  ||| ||||||  ||||||||| |||| || |||||||||||||| |  ||||| ||| | ||||| || |    
T  36789390 aattttaccattaatagtttgatgaattcgtatgataaaagttggaatgaataggtagtaagacaagtttttagcgcggatattgcagataaaattcttc 36789489  T
Q  251 atacgccattgatttctcaggttgacgaggata 283  Q
     ||||||  | ||| |||||||||| |||||||    
T  36789490 gtacgcctcttattcctcaggttgatgaggata 36789522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 149 - 288
Target Start/End: Original strand, 22291285 - 22291424
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  22291285 ataattttactgttaacagcttgatgaatttatatgataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcccacaaaatact 22291384  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaatt 288  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  22291385 acatacgccattgatttctcaggttgacgaggatataatt 22291424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 148 - 290
Target Start/End: Original strand, 28245165 - 28245307
Alignment:
Q  148 tataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatac 247  Q
    ||||||||||||||||||| |||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28245165 tataattttactgttaacaacttgatgaatttatatgataaaagttggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatac 28245264  T
Q  248 tacatacgccattgatttctcaggttgacgaggatagaattat 290  Q
    ||||||||||| || ||||||| ||||||||||||| ||||||    
T  28245265 tacatacgccactggtttctcaagttgacgaggatataattat 28245307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 2159003 - 2158942
Alignment:
Q  172 atgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatat 233  Q
    |||||||||||| |||||| |||||||||||||||| ||||||| |||||||| | ||||||    
T  2159003 atgaatttatatgataaaagctggaatgaacaggtgattagacaggtttttagcggtgatat 2158942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 149 - 282
Target Start/End: Complemental strand, 3206360 - 3206227
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| ||  |||||||||| ||| ||||||  |||||||||||||||||||| || |||||||| || ||||| |||||||| |||||    
T  3206360 ataattttactattaatagtctgatgaatttgtatgataaaagttggaatgaacaggtggttaggcaggtttttagagaggatattgcaaacaagatact 3206261  T
Q  249 acatacgccattgatttctcaggttgacgaggat 282  Q
     |||||  || | |||||||||||||| ||||||    
T  3206260 ccatacatcacttatttctcaggttgaagaggat 3206227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 290
Target Start/End: Original strand, 41600345 - 41600466
Alignment:
Q  169 ttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatactacatacgccattgatttctc 268  Q
    |||||||||||| || |||||| |||||| || |||||||||||||| || || |  |  ||||| ||| | |||||||| ||||||||| | |||||||    
T  41600345 ttgatgaatttacatcataaaagctggaacgagcaggtggttagacaggtattcaacgtggatattgcagataaaatacttcatacgccacttatttctc 41600444  T
Q  269 aggttgacgaggatagaattat 290  Q
    ||||||| || || ||||||||    
T  41600445 aggttgaggaagacagaattat 41600466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 290
Target Start/End: Complemental strand, 8120048 - 8119907
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| ||  ||||||||||| || | || |  |||||||| ||||| ||| || | ||||||||||  ||||| ||| | ||||||||    
T  8120048 ataattttactattaataggctgatgaatttacatgacaagagttggaatgagcaggtagttcgagatgtttttagtgcggatattgcagataaaatact 8119949  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaattat 290  Q
     ||||||||| | |||||||| ||||| || |||||| ||||    
T  8119948 tcatacgccacttatttctcaagttgaggaagatagatttat 8119907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 233
Target Start/End: Complemental strand, 13016188 - 13016127
Alignment:
Q  172 atgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatat 233  Q
    ||||| |||||| |||||| |||||||||||||||| ||||||| |||||||| | ||||||    
T  13016188 atgaacttatatgataaaagctggaatgaacaggtgattagacaggtttttagcggtgatat 13016127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 151 - 290
Target Start/End: Original strand, 16883984 - 16884123
Alignment:
Q  151 aattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatactac 250  Q
    ||||||||  |||| || ||||||||||||||| | ||||  |||||| ||||| |||||| ||| || |||| |||||| || || ||||||||||| |    
T  16883984 aattttaccattaatagtttgatgaatttatatgacaaaagttggaattaacagttggttatacaggtatttaatgatgagattgcgaacaaaatacttc 16884083  T
Q  251 atacgccattgatttctcaggttgacgaggatagaattat 290  Q
    |||||||| | |||||||||||||| ||||||||| ||||    
T  16884084 atacgccacttatttctcaggttgaggaggatagatttat 16884123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 10909422 - 10909496
Alignment:
Q  151 aattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagt 225  Q
    ||||||| | |||| |||||||||||||| ||| |||||| |||||||||||||||| |||||||||| ||||||    
T  10909422 aattttattattaatagcttgatgaatttctatgataaaagctggaatgaacaggtgattagacaagtgtttagt 10909496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 233
Target Start/End: Original strand, 26906445 - 26906506
Alignment:
Q  172 atgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatat 233  Q
    |||||||||||| |||||| |||||||||||||||| |||||||||||||||| | ||||||    
T  26906445 atgaatttatatgataaaagctggaatgaacaggtgattagacaagtttttagcggtgatat 26906506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 9958118 - 9958259
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| ||  ||||||||||  || | |||| |||||||||  |||| |||||||| || || || |  ||||| ||| | ||||||||    
T  9958118 ataattttactattaatagtctgatgaatttgcatgacaaaagctggaatgagaaggtagttagacaggtattaagcgtggatattgcagataaaatact 9958217  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaattat 290  Q
     ||||||||| | |||||||| ||||| || |||||||||||    
T  9958218 tcatacgccacttatttctcaagttgaggaagatagaattat 9958259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 23763754 - 23763615
Alignment:
Q  151 aattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatactac 250  Q
    ||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||  |||| || ||||||   ||||| ||||| ||||| ||      
T  23763754 aattttaatattaacagcttgatgaatttatatgataaaatctggaatgaacaggtggtacgacatgtatttagtacagatattgcaaataaaattctct 23763655  T
Q  251 atacgccattgatttctcaggttgacgaggatagaattat 290  Q
    |||| ||| | || ||||||||||| ||||||| ||||||    
T  23763654 atacaccactcatctctcaggttgatgaggataaaattat 23763615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 151 - 290
Target Start/End: Complemental strand, 23792925 - 23792786
Alignment:
Q  151 aattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatactac 250  Q
    ||||||| | ||||||||||| ||||||||||| |||||| ||||||||||||||||||  |||| || ||||||    |||| ||||| ||||| || |    
T  23792925 aattttaatattaacagcttggtgaatttatatgataaaagctggaatgaacaggtggtacgacaggtatttagtacaaatattgcaaataaaattctcc 23792826  T
Q  251 atacgccattgatttctcaggttgacgaggatagaattat 290  Q
    |||| ||| | || ||||||||||| ||||||| ||||||    
T  23792825 ataccccactcatctctcaggttgatgaggataaaattat 23792786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 151 - 254
Target Start/End: Original strand, 44885188 - 44885291
Alignment:
Q  151 aattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatactac 250  Q
    ||||||||| |||| |||||||||||||| ||| | |||| |||||||||||||||| |||||||||| ||||||  |  ||||||| | |||||||| |    
T  44885188 aattttactattaatagcttgatgaatttgtatgacaaaagctggaatgaacaggtgattagacaagtgtttagtacttctatagcagataaaatacttc 44885287  T
Q  251 atac 254  Q
    ||||    
T  44885288 atac 44885291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 11501214 - 11501354
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| ||||||||||||||| || | |||| ||||||||| |||||| ||||||| || |||||||  ||| | ||| | |||||| |    
T  11501214 ataattttactattaatagcttgatgaatttacatgacaaaagctggaatgagcaggtgattagacaggtatttagtgtggatgttgcagataaaataat 11501313  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaatta 289  Q
     | ||||||| | || ||||||||||| |  ||||||||||    
T  11501314 tcgtacgccacttatatctcaggttgaggcagatagaatta 11501354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 23378826 - 23378898
Alignment:
Q  161 ttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatat 233  Q
    |||| |||||||||||||| ||  |||||| ||||||||||||||| ||| |||| ||||||| || ||||||    
T  23378826 ttaatagcttgatgaatttgtacgataaaagctggaatgaacaggttgttcgacaggtttttaatgttgatat 23378898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0420 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0420
Description:

Target: scaffold0420; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 14750 - 14827
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtg 226  Q
    ||||||||||| |||| ||||||||||||||| || | |||| ||||||||| |||||||||||||| || |||||||    
T  14750 ataattttactattaatagcttgatgaatttacatgacaaaagctggaatgagcaggtggttagacaggtatttagtg 14827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 290
Target Start/End: Original strand, 6810 - 6951
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| ||  ||||||||||  || | |||| ||||||||| ||||| |||||||| || ||||| |  ||||| ||| | ||||||||    
T  6810 ataattttactattaatagtctgatgaatttgcatgacaaaagctggaatgagcaggtagttagacaggtatttagcgtggatattgcagataaaatact 6909  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaattat 290  Q
     ||||||||| | |||||||| ||||| || |||||||||||    
T  6910 tcatacgccacttatttctcaagttgaggaagatagaattat 6951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 149 - 290
Target Start/End: Complemental strand, 21704007 - 21703866
Alignment:
Q  149 ataattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatact 248  Q
    ||||||||||| |||| ||  ||||||||||| || |||||| |||||| || |||||||||||||| ||  | || |  ||||| | | | ||||||||    
T  21704007 ataattttactattaatagtctgatgaatttacatgataaaagctggaacgagcaggtggttagacaggtactcagcgtggatattgtagataaaatact 21703908  T
Q  249 acatacgccattgatttctcaggttgacgaggatagaattat 290  Q
     ||||||||| | |||||||||||||| || |||||||||||    
T  21703907 tcatacgccacttatttctcaggttgaggaagatagaattat 21703866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 192251 - 192148
Alignment:
Q  151 aattttactgttaacagcttgatgaatttatataataaaacctggaatgaacaggtggttagacaagtttttagtgatgatatagcaaacaaaatactac 250  Q
    ||||||||| |||| |||||||||||||| ||| | |||| || ||||||||||||| |||||||||| ||||||  || ||||||| | || ||||| |    
T  192251 aattttactattaatagcttgatgaatttgtatgacaaaatctagaatgaacaggtgattagacaagtgtttagtactgctatagcagataagatacttc 192152  T
Q  251 atac 254  Q
    ||||    
T  192151 atac 192148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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