View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4205_low_3 (Length: 814)

Name: NF4205_low_3
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4205_low_3
NF4205_low_3
[»] chr6 (4 HSPs)
chr6 (526-808)||(27130642-27130922)
chr6 (274-461)||(27130982-27131171)
chr6 (4-203)||(27131242-27131437)
chr6 (66-191)||(20611702-20611823)
[»] chr7 (3 HSPs)
chr7 (59-191)||(17800293-17800421)
chr7 (66-128)||(26917813-26917875)
chr7 (66-135)||(23020606-23020675)
[»] scaffold0018 (1 HSPs)
scaffold0018 (66-127)||(173643-173704)
[»] chr8 (8 HSPs)
chr8 (66-128)||(15167545-15167607)
chr8 (63-191)||(34789935-34790059)
chr8 (59-105)||(11290086-11290132)
chr8 (66-128)||(15078669-15078731)
chr8 (59-191)||(7944595-7944723)
chr8 (66-128)||(25561638-25561700)
chr8 (66-128)||(34048839-34048901)
chr8 (66-107)||(38009289-38009330)
[»] chr5 (10 HSPs)
chr5 (66-128)||(2411998-2412060)
chr5 (66-128)||(40794454-40794516)
chr5 (11-63)||(36869267-36869319)
chr5 (66-128)||(2024769-2024831)
chr5 (59-105)||(10407360-10407406)
chr5 (72-128)||(34425818-34425874)
chr5 (147-191)||(36868946-36868990)
chr5 (66-105)||(26719048-26719087)
chr5 (66-105)||(26988792-26988831)
chr5 (150-191)||(40794397-40794438)
[»] chr3 (6 HSPs)
chr3 (66-128)||(42453324-42453386)
chr3 (147-191)||(28689434-28689478)
chr3 (66-128)||(52374570-52374632)
chr3 (59-105)||(8420231-8420277)
chr3 (59-128)||(49392996-49393065)
chr3 (59-128)||(54574959-54575028)
[»] scaffold1320 (1 HSPs)
scaffold1320 (66-128)||(1265-1327)
[»] chr4 (5 HSPs)
chr4 (66-128)||(37746852-37746914)
chr4 (66-128)||(52468200-52468262)
chr4 (59-128)||(30507203-30507272)
chr4 (68-127)||(39329524-39329583)
chr4 (59-128)||(22077092-22077161)
[»] chr1 (3 HSPs)
chr1 (147-191)||(26803945-26803989)
chr1 (66-128)||(26803869-26803931)
chr1 (66-128)||(39134854-39134916)
[»] scaffold0227 (2 HSPs)
scaffold0227 (150-192)||(16016-16058)
scaffold0227 (59-104)||(15930-15975)
[»] scaffold0022 (2 HSPs)
scaffold0022 (59-105)||(39985-40031)
scaffold0022 (59-105)||(138045-138091)
[»] chr2 (4 HSPs)
chr2 (66-128)||(11912890-11912952)
chr2 (66-128)||(11952738-11952800)
chr2 (66-128)||(16227500-16227562)
chr2 (66-128)||(29694292-29694354)


Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 526 - 808
Target Start/End: Complemental strand, 27130922 - 27130642
Alignment:
Q  526 tttgtttgtttgtaatcttatgtcactttcataatagtgatattatccacttgattagataatgggctgttatagattaggaagctagattatgccaagc 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27130922 tttgtttgtttgtaatcttatgtcactttcataatagtgatattatccacttgattagataatgggctgttatagattaggaagctagattatgccaagc 27130823  T
Q  626 tgtttcattctttgtgatattctgtatgattagaccacattgtctttctcatacaaaagtagtattatagctagatgcctatatggcctaatttgctgct 725  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27130822 tgtttcattctttgtgatattctgtatgattagaccacattgtctttctcatacaaaagtagtattatagctagatgcctatatggcctaatttgctgct 27130723  T
Q  726 aattaattatactttgtttttgacctatgctaattaattaattcaaaacaaattcttcacaattcaataatcatgatgatgtc 808  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  27130722 aattaat--tactttgtttttgacctatgctaattaattaattcaaaacaaattattcacaattcaataatcatgatgatgtc 27130642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 274 - 461
Target Start/End: Complemental strand, 27131171 - 27130982
Alignment:
Q  274 cagatctcttttcatttacaaagttgagcctctggattcgttggaacgacccagttagggtctagttgtcttttccgtagatgaatattcactgctgcag 373  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27131171 cagatctcttttcatttatagagttgagcctctggattcgttggaacgacccagttagggtctagttgtcttttccgtagatgaatattcactgctgcag 27131072  T
Q  374 tgagaatttatctttgtcctggtatagaaatttgaatgcttggggccctat--tataaaagtacattgagatattctagttgacggcagt 461  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||  |||| ||| ||||||||||||||||||||||||||||    
T  27131071 tgagaatttatctttgtcctggtatagaaatttgaattcttggggcccgattatatataaggacattgagatattctagttgacggcagt 27130982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 27131437 - 27131242
Alignment:
Q  4 catattcaatagataacacagattctcgacgttttcacttgaatattctcttctttttccactttcctcttctgttgtctagttttaggcttattagaat 103  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27131437 catattcaatagatcacacagattctcaacgttttcacttgaatattctcttctttttccacttttctcttctgttgtctagttttaggcttattagaat 27131338  T
Q  104 tgagccttcttatttttggtgttagttaggtggatgnnnnnnngggagggtagtttgaaatttctcatgtatacggtagtgattttcatataggtgggtg 203  Q
    |||||||||||| ||||| |    ||||||||||||       | |||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||    
T  27131337 tgagccttcttacttttgct----gttaggtggatgtttttttgtgagggttgtttgagatttctcatgtatacgatagtgattttcatgtaggtgggtg 27131242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 191
Target Start/End: Original strand, 20611702 - 20611823
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttagttaggtggatgnnnnnnngggagggtagtttgaaatt 165  Q
    ||||||||| |||||||| ||||||||| ||||||||||| | | | ||| ||||||||||||    |||  ||       |||||||||||||||  ||    
T  20611702 tttcctcttttgttgtcttgttttaggcctattagaattgggtcattttacttttggtgttag----gtgagtgtttttttgggagggtagtttgaggtt 20611797  T
Q  166 tctcatgtatacggtagtgattttca 191  Q
     |||||||||||||||||||||||||    
T  20611798 cctcatgtatacggtagtgattttca 20611823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 17800421 - 17800293
Alignment:
Q  59 tttccactttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttagttaggtggatgnnnnnnngggagggtagtt 158  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||||| | | ||||  ||||||||    |||||||||||       |||| ||| |||    
T  17800421 tttccactttccttttctgttgtcttgttttaggcctattagaattgggtcctcttgcttttggtg----ttaggtggatgttttcttgggatggtggtt 17800326  T
Q  159 tgaaatttctcatgtatacggtagtgattttca 191  Q
    ||||||| |||||| ||||||||||||||||||    
T  17800325 tgaaattcctcatgcatacggtagtgattttca 17800293  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 26917875 - 26917813
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||||||||||||||| ||||||||||||||||||||| | ||||||  ||||||||||||    
T  26917875 tttcctcttctgttgtcttgttttaggcttattagaattgggtcttcttgcttttggtgttag 26917813  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 23020675 - 23020606
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttagttaggtg 135  Q
    ||||||||| |||||||| ||||||| | ||||||||||| | | | ||| |||||||||||| ||||||    
T  23020675 tttcctcttttgttgtcttgttttagacctattagaattgggtcatattacttttggtgttaggtaggtg 23020606  T

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Target: scaffold0018 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 173704 - 173643
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgtta 127  Q
    |||||||||||||||||||||||||||| ||||||||||||| | ||||  |||||||||||    
T  173704 tttcctcttctgttgtctagttttaggcctattagaattgagacctcttgcttttggtgtta 173643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 15167607 - 15167545
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||||||||||||||| ||||||||| ||||||||||| | | ||||| ||||||||||||    
T  15167607 tttcctcttctgttgtcttgttttaggcctattagaattgggtcctcttacttttggtgttag 15167545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 191
Target Start/End: Complemental strand, 34790059 - 34789935
Alignment:
Q  63 cactttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttagttaggtggatgnnnnnnngggagggtagtttgaa 162  Q
    ||||||||| || ||||||||| |||||||| ||||||||||| | | ||||| ||||||||    |||||||| ||        ||| ||| ||||||     
T  34790059 cactttccttttatgttgtctaattttaggcatattagaattgggtcatcttacttttggtg----ttaggtgggtgtttttttaggatggtggtttgat 34789964  T
Q  163 atttctcatgtatacggtagtgattttca 191  Q
    |||||||||||||||||||||||||||||    
T  34789963 atttctcatgtatacggtagtgattttca 34789935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 11290086 - 11290132
Alignment:
Q  59 tttccactttcctcttctgttgtctagttttaggcttattagaattg 105  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  11290086 tttccactttccttttctgttgtcttgttttaggcctattagaattg 11290132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 15078669 - 15078731
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||||||||||||||| ||||||||| | ||||||||| | | ||||| ||||||||||||    
T  15078669 tttcctcttctgttgtcttgttttaggcctgttagaattgggtcctcttacttttggtgttag 15078731  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 7944723 - 7944595
Alignment:
Q  59 tttccactttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttagttaggtggatgnnnnnnngggagggtagtt 158  Q
    ||||||||||||| |||| |||||| ||||||||| ||||| ||||| | | ||||  ||||||||    |||||||| ||       |||| ||| |||    
T  7944723 tttccactttccttttctattgtcttgttttaggcctattaaaattgtgtcctcttgcttttggtg----ttaggtgggtgtttttttgggatggtggtt 7944628  T
Q  159 tgaaatttctcatgtatacggtagtgattttca 191  Q
    |||  || |||||||||||||||||||||||||    
T  7944627 tgaggttcctcatgtatacggtagtgattttca 7944595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 25561700 - 25561638
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||| ||||||||||| ||||||||| ||||||||||| | | ||||  ||||||||||||    
T  25561700 tttcctattctgttgtcttgttttaggcctattagaattgggtcctcttgcttttggtgttag 25561638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 34048901 - 34048839
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||||||||||||||| ||  ||||| ||||||||| ||||| | ||| ||||||||||||    
T  34048901 tttcctcttctgttgtcttgtgctaggcctattagaatcgagccattttacttttggtgttag 34048839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 38009330 - 38009289
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgag 107  Q
    |||||||||||||||||| ||||||||| |||||||| ||||    
T  38009330 tttcctcttctgttgtcttgttttaggcctattagaactgag 38009289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 2411998 - 2412060
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    ||||||||| |||||||| ||||||||| ||||||||||||||  ||||| ||||||||||||    
T  2411998 tttcctcttatgttgtcttgttttaggcctattagaattgagcactcttacttttggtgttag 2412060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 40794516 - 40794454
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    ||||||||| |||||||| ||||||||||||||||||||| | | ||||| ||||||||||||    
T  40794516 tttcctcttttgttgtcttgttttaggcttattagaattgggtcctcttacttttggtgttag 40794454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 36869319 - 36869267
Alignment:
Q  11 aatagataacacagattctcgacgttttcacttgaatattctcttctttttcc 63  Q
    ||||||||||||| |||||| |||||||||||| || ||||||||||||||||    
T  36869319 aatagataacacatattctcaacgttttcacttcaaaattctcttctttttcc 36869267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 2024831 - 2024769
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    ||||||||| |||||||| ||||||||| ||||||||||||| | ||||  ||||||||||||    
T  2024831 tttcctcttatgttgtcttgttttaggcatattagaattgagtcctcttgcttttggtgttag 2024769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 10407360 - 10407406
Alignment:
Q  59 tttccactttcctcttctgttgtctagttttaggcttattagaattg 105  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||    
T  10407360 tttccactttccttttctgttgtcttgttttaggcctattagaattg 10407406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 34425818 - 34425874
Alignment:
Q  72 cttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||||||||| ||||||||| ||||||||||||| | ||||  ||||||||||||    
T  34425818 cttctgttgtcttgttttaggcctattagaattgagtcctcttgcttttggtgttag 34425874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 36868990 - 36868946
Alignment:
Q  147 gggagggtagtttgaaatttctcatgtatacggtagtgattttca 191  Q
    |||||||| |||||| ||| |||||||||||||||||||||||||    
T  36868990 gggagggtggtttgagattcctcatgtatacggtagtgattttca 36868946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 26719087 - 26719048
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattg 105  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  26719087 tttcctcttctgttgtttagttttaggcctattagaattg 26719048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 105
Target Start/End: Complemental strand, 26988831 - 26988792
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattg 105  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  26988831 tttcctcttctgttgtttagttttaggcctattagaattg 26988792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 40794438 - 40794397
Alignment:
Q  150 agggtagtttgaaatttctcatgtatacggtagtgattttca 191  Q
    ||||| ||||||  ||||||||||||||||||||||||||||    
T  40794438 agggtggtttgaggtttctcatgtatacggtagtgattttca 40794397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 42453324 - 42453386
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||| ||||||||||||| ||||||||| ||||||||||||| | ||||| ||||||||||||    
T  42453324 tttcttcttctgttgtcttgttttaggcctattagaattgagtcctcttacttttggtgttag 42453386  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 28689478 - 28689434
Alignment:
Q  147 gggagggtagtttgaaatttctcatgtatacggtagtgattttca 191  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||    
T  28689478 gggagggtagtttgagatttctcatgtatacggcagtgattttca 28689434  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 52374570 - 52374632
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||| ||||||||||| ||||||||| ||||||||||||| | ||||  ||||||||||||    
T  52374570 tttccttttctgttgtcttgttttaggcctattagaattgagtcctcttgcttttggtgttag 52374632  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 8420231 - 8420277
Alignment:
Q  59 tttccactttcctcttctgttgtctagttttaggcttattagaattg 105  Q
    ||||||||||||| |||||||||||  |||||||| |||||||||||    
T  8420231 tttccactttccttttctgttgtcttattttaggcatattagaattg 8420277  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 49392996 - 49393065
Alignment:
Q  59 tttccactttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    ||||||| ||||| ||| ||||||| ||||||||| ||||||||||  | | ||||| ||||||||||||    
T  49392996 tttccacattccttttccgttgtcttgttttaggcctattagaattaggtcctcttacttttggtgttag 49393065  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 54575028 - 54574959
Alignment:
Q  59 tttccactttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||| |||||||| || |||||| | ||||||||| ||||||||||||| | ||||| ||||| ||||||    
T  54575028 tttctactttccttttttgttgttttgttttaggcatattagaattgagtcatcttacttttgttgttag 54574959  T

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Target: scaffold1320 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 1265 - 1327
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||||||||||||||| ||||||||| | ||||||||| | | ||||| ||||||||||||    
T  1265 tttcctcttctgttgtcttgttttaggcctgttagaattgggtcctcttacttttggtgttag 1327  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 37746914 - 37746852
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||||||||||||||| ||||||||| ||||||||||| | | ||||  ||||||||||||    
T  37746914 tttcctcttctgttgtcttgttttaggcctattagaattgggtcatcttgcttttggtgttag 37746852  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 52468200 - 52468262
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    ||||||||| |||||||| ||||||||| ||||||||||||| | |||| ||||||| |||||    
T  52468200 tttcctcttatgttgtcttgttttaggcctattagaattgagtcctcttgtttttggcgttag 52468262  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 30507272 - 30507203
Alignment:
Q  59 tttccactttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    ||||||||||||| || |||||||| ||||||||| ||| ||||||||| | ||||  ||||||||||||    
T  30507272 tttccactttccttttatgttgtcttgttttaggcctataagaattgagtcctcttgcttttggtgttag 30507203  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 39329583 - 39329524
Alignment:
Q  68 tcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgtta 127  Q
    |||||||||||||||| ||||||||| ||||||||||  | ||||||  |||||||||||    
T  39329583 tcctcttctgttgtcttgttttaggcctattagaatttggtcttcttgcttttggtgtta 39329524  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 22077092 - 22077161
Alignment:
Q  59 tttccactttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||||||| || ||||||||||| ||||||| | ||||||||||||| | || |  ||||||||||||    
T  22077092 tttccacttttcttttctgttgtctggttttagacctattagaattgagtcctcatgcttttggtgttag 22077161  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Original strand, 26803945 - 26803989
Alignment:
Q  147 gggagggtagtttgaaatttctcatgtatacggtagtgattttca 191  Q
    |||||||| ||||||  ||||||||||||||||||||||||||||    
T  26803945 gggagggtggtttgaggtttctcatgtatacggtagtgattttca 26803989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 26803869 - 26803931
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||||||||||||||| ||||||| | |||||||||||||   ||||  ||||||||||||    
T  26803869 tttcctcttctgttgtcttgttttagtcctattagaattgagttatcttgcttttggtgttag 26803931  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 39134916 - 39134854
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||||||||||||||| |||||| || ||||||||||| | | ||||  ||||||||||||    
T  39134916 tttcctcttctgttgtcttgttttaagcctattagaattgggtcctcttgcttttggtgttag 39134854  T

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Target: scaffold0227 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 16016 - 16058
Alignment:
Q  150 agggtagtttgaaatttctcatgtatacggtagtgattttcat 192  Q
    ||||| ||||||  |||||||||||||||||||||||||||||    
T  16016 agggtggtttgaggtttctcatgtatacggtagtgattttcat 16058  T

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Target: scaffold0227; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 15930 - 15975
Alignment:
Q  59 tttccactttcctcttctgttgtctagttttaggcttattagaatt 104  Q
    ||||||||||||| ||||||||||| ||||||||| ||||| ||||    
T  15930 tttccactttccttttctgttgtcttgttttaggcctattataatt 15975  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 39985 - 40031
Alignment:
Q  59 tttccactttcctcttctgttgtctagttttaggcttattagaattg 105  Q
    ||||||||||| | ||||||||||| ||||||||| |||||||||||    
T  39985 tttccactttctttttctgttgtcttgttttaggcctattagaattg 40031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 138045 - 138091
Alignment:
Q  59 tttccactttcctcttctgttgtctagttttaggcttattagaattg 105  Q
    ||||||||||| | ||||||||||| ||||||||| |||||||||||    
T  138045 tttccactttctttttctgttgtcttgttttaggcctattagaattg 138091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 11912952 - 11912890
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    ||||||||| |||||||| ||||||||| ||||||||||| | | ||||  ||||||||||||    
T  11912952 tttcctcttttgttgtcttgttttaggcctattagaattgggtcatcttgattttggtgttag 11912890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 11952800 - 11952738
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    ||||||||||  |||||| ||||||||| ||||||||||||| | |||| |||| ||||||||    
T  11952800 tttcctcttccattgtcttgttttaggcctattagaattgagtcctcttgttttaggtgttag 11952738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 16227562 - 16227500
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    ||||||||| |||||||| |||||| |  ||||||||||||| | ||||| ||||||||||||    
T  16227562 tttcctcttttgttgtcttgttttatgtctattagaattgagtcatcttacttttggtgttag 16227500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 29694292 - 29694354
Alignment:
Q  66 tttcctcttctgttgtctagttttaggcttattagaattgagccttcttatttttggtgttag 128  Q
    |||||||||||||||||| ||||||| | ||||||||||| | | ||||  ||||||||||||    
T  29694292 tttcctcttctgttgtcttgttttagacctattagaattgggtcctcttgcttttggtgttag 29694354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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