View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4205_low_33 (Length: 270)
Name: NF4205_low_33
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_33 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 68 - 255
Target Start/End: Complemental strand, 5630794 - 5630607
Alignment:
| Q |
68 |
tgcatggttcacatcgccacatgtatgtataactataaaatgacgcaatcaacatgtgaaaactcttatttttcttcaaaggacattgttgttcgtgtct |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
5630794 |
tgcatggttcacatcgccacatgtatgtataactataaaatgacgcaatcaacatgtgaaaactcttatttttcttcaaaggacattgttgtttgtgtct |
5630695 |
T |
|
| Q |
168 |
ctcaaattctgtagagacatggaaacaatggaacaaaggcttgtctcaagttggtctaatgttcattcctcagttccaccttcctttg |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5630694 |
ctcaaattctgtagagacatggaaacaatggaacaaaggcttgtctcaagttggtctaatgttcattcctcagttccaccttcctttg |
5630607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 131 - 253
Target Start/End: Original strand, 16433013 - 16433147
Alignment:
| Q |
131 |
tcttatttttcttcaaaggacattgttgttcgtgtctctcaaattctgtagagaca------------tggaaacaatggaacaaaggcttgtctcaagt |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
16433013 |
tcttatttttcttcaaatgacattgttgtttgtgtctctcaaattctatagagacaacataggaaacatggaaacaatggaacaaaggcttatctcaagt |
16433112 |
T |
|
| Q |
219 |
tggtctaatgttcattcctcagttccaccttcctt |
253 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |
|
|
| T |
16433113 |
tggtctaatgttaattcctcagttccaccttcctt |
16433147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University