View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4205_low_34 (Length: 260)
Name: NF4205_low_34
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_34 |
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| [»] chr8 (9 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 2034105 - 2033859
Alignment:
| Q |
14 |
atcatcatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccata |
113 |
Q |
| |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2034105 |
atcattatcagaatgctttgttgttcctacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccata |
2034006 |
T |
|
| Q |
114 |
tctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtatttcccatattgtaacagtatat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2034005 |
tctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtatttcccatattgtaacagtatat |
2033906 |
T |
|
| Q |
214 |
ctctgcaagaataagcagtcaatcagagagagaaaaaattatggatt |
260 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2033905 |
ctctgcaagaataagcagtcaatcagagagaaaaaaaattatggatt |
2033859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 2055246 - 2055039
Alignment:
| Q |
14 |
atcatcatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccata |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2055246 |
atcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccata |
2055147 |
T |
|
| Q |
114 |
tctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtatttcccatattgtaacagtatat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| |
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| T |
2055146 |
tctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtgtttcccatatcgtagcagtatat |
2055047 |
T |
|
| Q |
214 |
ctctgcaa |
221 |
Q |
| |
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|||||||| |
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|
| T |
2055046 |
ctctgcaa |
2055039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 14 - 227
Target Start/End: Complemental strand, 2050837 - 2050624
Alignment:
| Q |
14 |
atcatcatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccata |
113 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| ||||| |
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| T |
2050837 |
atcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggaggataataatggcaaagagcaattagcccttcagcacaacccata |
2050738 |
T |
|
| Q |
114 |
tctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtatttcccatattgtaacagtatat |
213 |
Q |
| |
|
||||| | |||||||||||||| ||||| |||||||||| ||||||||||| |||||| ||||||||||||| | ||||||||||| || | || || |
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| T |
2050737 |
tcttttagatggtttggattcagtcctaaagcttctgacatcaattcaaatagtaaagttcctagattcatcacctgtttcccatattctagtattacat |
2050638 |
T |
|
| Q |
214 |
ctctgcaagaataa |
227 |
Q |
| |
|
||||| |||||||| |
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|
| T |
2050637 |
ctctgtaagaataa |
2050624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 25 - 225
Target Start/End: Complemental strand, 2029535 - 2029335
Alignment:
| Q |
25 |
aatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccatatctttcaaatg |
124 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| |||||| |||||||||| | ||| |
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|
| T |
2029535 |
aatgctttgttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaagagcaattagcccttcggcacaacccatatcttttagatg |
2029436 |
T |
|
| Q |
125 |
gtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtatttcccatattgtaacagtatatctctgcaagaa |
224 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||| | ||||| ||||||||||||| | ||||||||||| || |||||||||||||||||| |
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|
| T |
2029435 |
gtttggattcaaacctaaagcttgtgacaacaattcaaacagcaaagttcctagattcatcacctgtttcccatattctagtagtatatctctgcaagaa |
2029336 |
T |
|
| Q |
225 |
t |
225 |
Q |
| |
|
| |
|
|
| T |
2029335 |
t |
2029335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 14 - 201
Target Start/End: Complemental strand, 2058070 - 2057883
Alignment:
| Q |
14 |
atcatcatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccata |
113 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||||||||||||| ||| ||| ||| || ||||| ||||||||||| ||||||||||||||| ||||| |
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|
| T |
2058070 |
atcattatcagaatgcttggttgttcccacagtcaattctggttcgggataagaaggataataatgacaaagagcaattagcccttcagcacaacccata |
2057971 |
T |
|
| Q |
114 |
tctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtatttcccatatt |
201 |
Q |
| |
|
||||| | ||||||||||||||||||||| |||||||||||||||||||| | |||||| ||||||||||||| | ||||||||||| |
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| T |
2057970 |
tcttttagatggtttggattcaaacctaaagcttctgacaacaattcaaacagtaaagttcctagattcatcacttgtttcccatatt |
2057883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 2046915 - 2046709
Alignment:
| Q |
21 |
tcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccatatctttca |
120 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||| | ||||| || ||||||||||||||| | |
|
|
| T |
2046915 |
tcagaatacttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaagagcaaataacccttgagtacaatccatatctttta |
2046816 |
T |
|
| Q |
121 |
aatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtatttcccatattgtaacagtatatctctgca |
220 |
Q |
| |
|
||| ||||||| ||||||||| |||| || ||||||||||| ||||||||||||||||||||||||| ||| ||||||| || | |||||||||||| |
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|
| T |
2046815 |
gatgatttggatgcaaacctaaatcttcagataacaattcaaacaataaagtccctagattcatcatgtgttttccatattctagtattatatctctgca |
2046716 |
T |
|
| Q |
221 |
agaataa |
227 |
Q |
| |
|
||||||| |
|
|
| T |
2046715 |
agaataa |
2046709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 1948619 - 1948823
Alignment:
| Q |
24 |
gaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccatatctttcaaat |
123 |
Q |
| |
|
|||||||| |||||||| | ||||| ||||||||||||||||| ||| || |||||||||| ||||||||||||||||| |||| |||||||||| | || |
|
|
| T |
1948619 |
gaatgcttagttgttcccatagtcagttctggttcaggacaagaaggataataatggcaaacagcaatcagcccttcagtacaacccatatcttttagat |
1948718 |
T |
|
| Q |
124 |
ggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtatttcccatattgtaacagtatatctctgcaaga |
223 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| || | ||||||||||||||||| || ||||||||||| || |||||||||| |||| |
|
|
| T |
1948719 |
ggtttggtttcaaacctaatgcttctgacaaaaattcaaacaacatagtccctagattcatcacgtgtttcccatattctagggttatatctctgtaaga |
1948818 |
T |
|
| Q |
224 |
ataag |
228 |
Q |
| |
|
||||| |
|
|
| T |
1948819 |
ataag |
1948823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 221
Target Start/End: Complemental strand, 2037659 - 2037462
Alignment:
| Q |
24 |
gaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccatatctttcaaat |
123 |
Q |
| |
|
|||||||| | |||||| ||||||||||||||||| ||||||| ||| || |||||||||||||||| || |||| |||||||||||||||||| | || |
|
|
| T |
2037659 |
gaatgcttggctgttcccacagtcaattctggttccggacaagaaggataataatggcaaagagcaaatagtcctttagcacaatccatatcttttagat |
2037560 |
T |
|
| Q |
124 |
ggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtatttcccatattgtaacagtatatctctgcaa |
221 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||||| ||| | ||| ||||||||||| |||||| ||| ||||||| || ||||||||||||||| |
|
|
| T |
2037559 |
ggtttggattcagacctaaagcttctgataacaattaaaacagtaaggtccctagatttgtcatgtgttttccatattctagaagtatatctctgcaa |
2037462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 10768570 - 10768363
Alignment:
| Q |
14 |
atcatcatcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccata |
113 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| | ||||||| | |||||||||||||| ||| |
|
|
| T |
10768570 |
atcattatcagaatgcttggttgttcccacagtcaattctggttcaggacaaggaggataataatgaccgagagcaagtaatccttcagcacaatcaata |
10768471 |
T |
|
| Q |
114 |
tctttcaaatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtatttcccatattgtaacagtatat |
213 |
Q |
| |
|
||||| | |||||||||||||| |||||| |||||||| | | |||||| |||||||||||||| || |||||| ||| ||||||| || || ||||| |
|
|
| T |
10768470 |
tcttttagatggtttggattcagacctaaagcttctgagcatagttcaaacaataaagtccctaggtttctcatgtgttttccatattctagcaatatat |
10768371 |
T |
|
| Q |
214 |
ctctgcaa |
221 |
Q |
| |
|
|||||||| |
|
|
| T |
10768370 |
ctctgcaa |
10768363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 227
Target Start/End: Original strand, 48906912 - 48907118
Alignment:
| Q |
21 |
tcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccatatctttca |
120 |
Q |
| |
|
|||||||||||| || ||| |||||||| ||||||||||| || ||||| || ||||||||| |||||| ||||||||| ||||| |||||||||| | |
|
|
| T |
48906912 |
tcagaatgcttttttagtcccacagtcaaatctggttcagggcatggaggataataatggcaagcagcaattagcccttcaacacaacccatatctttta |
48907011 |
T |
|
| Q |
121 |
aatggtttggattcaaacctaatgcttctgacaacaattcaaataataaagtccctagattcatcatgtatttcccatattgtaacagtatatctctgca |
220 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||||||||||| |||| || || |||||||| | ||| | ||||| || |||||| |||||||| |
|
|
| T |
48907012 |
gatggtttggattcagacctaaagcttctgacagcaattcaaatagtaaaaatcccaggttcatcatttgtttactatattctatcagtatgtctctgca |
48907111 |
T |
|
| Q |
221 |
agaataa |
227 |
Q |
| |
|
||||||| |
|
|
| T |
48907112 |
agaataa |
48907118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 28783475 - 28783587
Alignment:
| Q |
20 |
atcagaatgctttgttgttccgacagtcaattctggttcaggacaaggagggtagtaatggcaaagagcaatcagcccttcagcacaatccatatctttc |
119 |
Q |
| |
|
||||||||| ||||| ||||| | ||| ||||||||||||||||||| ||| |||||||| | ||| | | | ||| | ||||||| |||| ||||| |
|
|
| T |
28783475 |
atcagaatgttttgtggttcccatagttaattctggttcaggacaagcaggatagtaatgactaagtgatagaatccccttagcacaacccatgtctttt |
28783574 |
T |
|
| Q |
120 |
aaatggtttggat |
132 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28783575 |
aaatggtttggat |
28783587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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