View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_35 (Length: 250)
Name: NF4205_low_35
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 25104199 - 25103963
Alignment:
| Q |
6 |
atatataaatccccttaaagtatacataataaatgaaataaaaatagaaacgagaatttagtagtaggttacaggaaaataaatatatttcaaatatgct |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25104199 |
atatataaatccccttaaagtatacataataaatgaaataaaaatagaaacgagaatttagtagtaggttacaggaaaataaatatattttaaatatgct |
25104100 |
T |
|
| Q |
106 |
atctagctagcttggtaaatgtttctggtggaaaaattctttgcattaaactgcatccaagcttattctgatctcttgtgaaaactaccgcaagtcataa |
205 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25104099 |
atctagctagctaggtaaatgtttctggtggaaaaattctttgcattaaactgcatccaagcttattctgatctcttgtgaaaactatcgcaagtcataa |
25104000 |
T |
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| Q |
206 |
cttttctgcaaaacacatttccataaattttcatctc |
242 |
Q |
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|||||||||||||||||||||||||| ||||| |||| |
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| T |
25103999 |
cttttctgcaaaacacatttccataacttttcttctc |
25103963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 242
Target Start/End: Complemental strand, 25163292 - 25163056
Alignment:
| Q |
6 |
atatataaatccccttaaagtatacataataaatgaaataaaaatagaaacgagaatttagtagtaggttacaggaaaataaatatatttcaaatatgct |
105 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25163292 |
atatataaatccccttaaagtatacataataaatgaaataaaaatagaaacgagaatttagtagtaggttacaggaaaataaatatattttaaatatgct |
25163193 |
T |
|
| Q |
106 |
atctagctagcttggtaaatgtttctggtggaaaaattctttgcattaaactgcatccaagcttattctgatctcttgtgaaaactaccgcaagtcataa |
205 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25163192 |
atctagctagctaggtaaatgtttctggtggaaaaattctttgcattaaactgcatccaagcttattctgatctcttgtgaaaactatcgcaagtcataa |
25163093 |
T |
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| Q |
206 |
cttttctgcaaaacacatttccataaattttcatctc |
242 |
Q |
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|||||||||||||||||||||||||| ||||| |||| |
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| T |
25163092 |
cttttctgcaaaacacatttccataacttttcttctc |
25163056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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