View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_38 (Length: 241)
Name: NF4205_low_38
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 7163483 - 7163673
Alignment:
| Q |
17 |
aagcacacggtaagtcgcgtgctccaatgatgtctcaaatgttgggaaaatcattttaaaaactaaacttttctttttacaagttaaaaactaaactatt |
116 |
Q |
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| T |
7163483 |
aagcacacgggaagtcgcgtgctccaatgatgcctcaaatattgggaaaatcattttaaaaactaaactttt-tttttacaagttaaaaactaaactatt |
7163581 |
T |
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| Q |
117 |
aatatattctctctagactcaattaaaagaaaattaactagttacatatagactacg-aaaatagttaatcttgtttaatttttctgggtat |
207 |
Q |
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| T |
7163582 |
aatatattctctctagactcaattaaaagaaaattaactagttacatatagactacgaaaaatagttaatcttgtttaatttttctgggtat |
7163673 |
T |
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