View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4205_low_39 (Length: 238)
Name: NF4205_low_39
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 33083462 - 33083649
Alignment:
| Q |
12 |
tgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaaccaacctttaatcaattactactccacacatctaaatggtcactttc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33083462 |
tgaaagtgcacactcaacccatatgttttacaaaaacatgtatttaagaacaac----ctttaatcaattacgactccacacatctaaatggtcactttc |
33083557 |
T |
|
| Q |
112 |
caaaacagtatccaaaatgttcatgaccacttagcctaatcgagttaaggacccaaaaagcagcacaacaacaaagtaacaaacacgagaga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
33083558 |
caaaacagtatccaaaatgttcatgaccacttagcctaattgagttaaggacccaaaaaacagcaaaacaacaaagtaacaaacacgagaga |
33083649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33063961 - 33064026
Alignment:
| Q |
1 |
cacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
66 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33063961 |
cacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
33064026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33065047 - 33065112
Alignment:
| Q |
1 |
cacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
66 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33065047 |
cacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
33065112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33067207 - 33067272
Alignment:
| Q |
1 |
cacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
66 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33067207 |
cacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
33067272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33069345 - 33069410
Alignment:
| Q |
1 |
cacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
66 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33069345 |
cacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
33069410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 33062866 - 33062929
Alignment:
| Q |
1 |
cacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaa |
64 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33062866 |
cacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaa |
33062929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33066121 - 33066186
Alignment:
| Q |
1 |
cacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
66 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33066121 |
cacaaattgtttgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
33066186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33068259 - 33068324
Alignment:
| Q |
1 |
cacaaattgcctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
66 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33068259 |
cacaaattgtttgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaagaacaacc |
33068324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University