View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4205_low_4 (Length: 773)
Name: NF4205_low_4
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_4 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 640; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 21 - 761
Target Start/End: Original strand, 17781667 - 17782407
Alignment:
| Q |
21 |
atccgttctccatcaaagcaactctacacttttctctcatatcttttaccttcctcctaatctcatcactaccgttcatcaatgtacgaacaccattttc |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17781667 |
atccgttctccatcaaagcaactctacacttttctctcatatcttttaccttcctcctaatctcatcactaaggttcatcaatgtacgaacaccattttc |
17781766 |
T |
|
| Q |
121 |
aacttcttctgcctgtaccaaatctccacccactcgataatccaacctaatctccactgctaatcccaattctctaaccatttgaaatgcattcatttgt |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
17781767 |
aacttcttctgcctgtaccaaatctccacccacacgataatccaacctaatctccactgctaatcccaattctctaaccatttgaaacgcgttcatttgt |
17781866 |
T |
|
| Q |
221 |
tgctctgcatacaccggccacgtagcaattggcgcaccataccacaaactctccaatatcgagttccaaccacaatgcgacacgaatccacccaccgcct |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
17781867 |
tgctctgcatacaccggccacgtagcaattggcacaccataccacaaactctccaatatcgagttccaaccacaatgcgagacgaatccacccacggcct |
17781966 |
T |
|
| Q |
321 |
tatgggccaataccttggcttgtgggacccaaccacaaactatacccatccccgcagtccgttccaaaaacccgtccggtagaacattgtcgtaacttgt |
420 |
Q |
| |
|
| ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
17781967 |
tgtgggccagaaccttcgcttgtgggacccacccacaaactatacccatccccgcagcccgtgtcaaaaacccgtccggtagaacattgtcgtaacttgt |
17782066 |
T |
|
| Q |
421 |
gtaatctcttgggtccgctgactgggccttcggaggtccacgtaaagcccataaaaatctaaccccaacacgttcaagaccaatagcaattttctcaacc |
520 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17782067 |
gtaatctcttgggtccgctgactgggccttcggaggtccacgtaaagcccataaaaatctaaccccagcacgttcaagaccaatagcaattttctcaacc |
17782166 |
T |
|
| Q |
521 |
tgtttgacttcaagacttcccaaactaccaaaacatnnnnnnnccacagaagcaagaggctgcaaatcgagccactgcattatataattatattggactg |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
17782167 |
tgtttgacttcaagacttcccaaactaccaaaacataaaaaaaccacagaagcaagaggctgcaaatcgagccactccattatataattatattggactg |
17782266 |
T |
|
| Q |
621 |
ggtttggatcccattcagccggtccaacaagatcaataaccggcccaattgtgtaaaccggtggaagttgtgaatcatcataaagtgattgaagagcgta |
720 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
17782267 |
ggtttggatcccattcagccggtccaacaagatcaataaccggcccaattgtgtaaaccggtggaagctgcgaatcatcataaagtgattgaagagcgta |
17782366 |
T |
|
| Q |
721 |
gggttcaagctcttgtaacgtatttaccacgataccctttg |
761 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17782367 |
gggttcaagctcttgtaacgtatttaccacgataccctttg |
17782407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 21 - 761
Target Start/End: Original strand, 20582012 - 20582752
Alignment:
| Q |
21 |
atccgttctccatcaaagcaactctacacttttctctcatatcttttaccttcctcctaatctcatcactaccgttcatcaatgtacgaacaccattttc |
120 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||| | |
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|
| T |
20582012 |
atccattctccatcaaactaaccttacacttttcactcatttcttttaccttcctcctaatctcatcactattgttcatcaaggtactaacaccattctt |
20582111 |
T |
|
| Q |
121 |
aacttcttctgcctgtaccaaatctccacccactcgataatccaacctaatctccactgctaatcccaattctctaaccatttgaaatgcattcatttgt |
220 |
Q |
| |
|
||||||||||||| |||| ||| |||||||| | |||||||| ||||||||||||||||||||||||||| |||||||| || ||||||||||||||| |
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|
| T |
20582112 |
aacttcttctgccaacaccagatccccacccaccctataatccagcctaatctccactgctaatcccaattccctaaccatctggaatgcattcatttgt |
20582211 |
T |
|
| Q |
221 |
tgctctgcatacaccggccacgtagcaattggcgcaccataccacaaactctccaatatcgagttccaaccacaatgcgacacgaatccacccaccgcct |
320 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| ||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
20582212 |
tgctctgcatagaccggccacgtggcaattggcacaccaaaccacaaactctctaaaatcgagttccaaccacaatgcgacacgaatccacccactgcct |
20582311 |
T |
|
| Q |
321 |
tatgggccaataccttggcttgtgggacccaaccacaaactatacccatccccgcagtccgttccaaaaacccgtccggtagaacattgtcgtaacttgt |
420 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| ||||| ||||||||||| ||| ||||||| ||||||||||| |||||||||||||| |||||||| | |
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|
| T |
20582312 |
tgtgggccagtaccttggcttgtgggacccatccacatactatacccattcccacagtccgctccaaaaacccatccggtagaacattctcgtaactcgc |
20582411 |
T |
|
| Q |
421 |
gtaatctcttgggtccgctgactgggccttcggaggtccacgtaaagcccataaaaatctaaccccaacacgttcaagaccaatagcaattttctcaacc |
520 |
Q |
| |
|
|| ||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||| || || |
|
|
| T |
20582412 |
atagtctctcgggtctgctaattgggccttcggaggtccacgtaaagcccataaaaatctaatcccaacccgttcaagtccaatagcaatttcctgtact |
20582511 |
T |
|
| Q |
521 |
tgtttgacttcaagacttcccaaactaccaaaacatnnnnnnnccacagaagcaagaggctgcaaatcgagccactgcattatataattatattggactg |
620 |
Q |
| |
|
||||| |||| ||||| ||||| |||||||| || ||||||| ||| || ||||||||| | ||||| ||| ||||||||||| ||||||| |
|
|
| T |
20582512 |
tgttttacttttagactacccaagctaccaaagcaaagaaaaaccacagacccaacagactgcaaatctaaccactccatgatataattatactggactg |
20582611 |
T |
|
| Q |
621 |
ggtttggatcccattcagccggtccaacaagatcaataaccggcccaattgtgtaaaccggtggaagttgtgaatcatcataaagtgattgaagagcgta |
720 |
Q |
| |
|
||||||| ||||||| ||||||||||||| || | |||||| ||||||| |||||| |||||||| || |||| | ||||||||||| ||||| || |
|
|
| T |
20582612 |
ggtttgggtcccattggaccggtccaacaaggtcgagaaccggtccaattgggtaaacaggtggaagctgcaaatccttgtaaagtgattgtagagcata |
20582711 |
T |
|
| Q |
721 |
gggttcaagctcttgtaacgtatttaccacgataccctttg |
761 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
20582712 |
aggttcaagctcttgtaatgtatttaccacaataccctttg |
20582752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 29 - 761
Target Start/End: Original strand, 20562857 - 20563589
Alignment:
| Q |
29 |
tccatcaaagcaactctacacttttctctcatatcttttaccttcctcctaatctcatcactaccgttcatcaatgtacgaacaccattttcaacttctt |
128 |
Q |
| |
|
||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||||| |||| ||||||||| ||| |||||||| | ||||||| |
|
|
| T |
20562857 |
tccatcaaagcaaatctacacttttcactcatttctttaaccttcctcctaatctcatgactattgttcatcaaggtagttacaccattcttgacttctt |
20562956 |
T |
|
| Q |
129 |
ctgcctgtaccaaatctccacccactcgataatccaacctaatctccactgctaatcccaattctctaaccatttgaaatgcattcatttgttgctctgc |
228 |
Q |
| |
|
||||||| |||||||| |||||||| | ||||||||||||||||||||| |||| |||| |||| |||||||| | |||||||||||||||||||| || |
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|
| T |
20562957 |
ctgcctgcaccaaatccccacccaccctataatccaacctaatctccacggctagtcccgattccctaaccatctcgaatgcattcatttgttgctccgc |
20563056 |
T |
|
| Q |
229 |
atacaccggccacgtagcaattggcgcaccataccacaaactctccaatatcgagttccaaccacaatgcgacacgaatccacccaccgccttatgggcc |
328 |
Q |
| |
|
||| || |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20563057 |
ataaactggccacgtggcaattggcacaccataccacaaactctccaatatcgagttccaaccacaatgcgacacgaatccacccactgccttatgggct |
20563156 |
T |
|
| Q |
329 |
aataccttggcttgtgggacccaaccacaaactatacccatccccgcagtccgttccaaaaacccgtccggtagaacattgtcgtaacttgtgtaatctc |
428 |
Q |
| |
|
| ||||| |||||||| | ||| ||||| || |||||||||||| || ||| |||||| || |||||||||||||| || ||||| | |||||| |
|
|
| T |
20563157 |
agcacctttgcttgtggaatccacccacacacaatacccatccccatggttcgtctcaaaaatccatccggtagaacattctcataactcataaaatctc |
20563256 |
T |
|
| Q |
429 |
ttgggtccgctgactgggccttcggaggtccacgtaaagcccataaaaatctaaccccaacacgttcaagaccaatagcaattttctcaacctgtttgac |
528 |
Q |
| |
|
|||||||| | | |||||||| |||||| | | || |||||| |||||||||| |||| | ||||||| ||||||||||||| |||||||||||| | |
|
|
| T |
20563257 |
ttgggtcctccaattgggccttaggaggttcccttatagcccacaaaaatctaatcccagcctgttcaagcccaatagcaatttgctcaacctgttttgc |
20563356 |
T |
|
| Q |
529 |
ttcaagacttcccaaactaccaaaacatnnnnnnnccacagaagcaagaggctgcaaatcgagccactgcattatataattatattggactgggtttgga |
628 |
Q |
| |
|
|||||||||||||||||| || |||||| ||||||| || |||||||||||| ||||||| || || |||||||| || || ||||||||| |
|
|
| T |
20563357 |
ttcaagacttcccaaacttccgaaacatagaaaaaccacagatttaacaggctgcaaatcaagccactccacgatgtaattatactgtaccgggtttgga |
20563456 |
T |
|
| Q |
629 |
tcccattcagccggtccaacaagatcaataaccggcccaattgtgtaaaccggtggaagttgtgaatcatcataaagtgattgaagagcgtagggttcaa |
728 |
Q |
| |
|
||||||| |||||||||||||||||| |||||| ||||||| |||||| |||||||| || |||||| | |||||||| ||||||||| ||||||| |
|
|
| T |
20563457 |
tcccattggaccggtccaacaagatcaagaaccggtccaattgggtaaacaggtggaagctgcaaatcattgtgaagtgattcaagagcgtatggttcaa |
20563556 |
T |
|
| Q |
729 |
gctcttgtaacgtatttaccacgataccctttg |
761 |
Q |
| |
|
|||||| ||| |||||||| | |||||||||| |
|
|
| T |
20563557 |
gctcttttaatgtatttacgataataccctttg |
20563589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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