View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_42 (Length: 225)
Name: NF4205_low_42
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 34827094 - 34827290
Alignment:
| Q |
14 |
ataatactcgtacgatttttaagatattcctaaaattttgaagcattaacataaagcatacaacacacacactaaataaaattcataatttataggataa |
113 |
Q |
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| T |
34827094 |
ataatactcgtacgatttttaagatattcctaaaattttgaagcattaacataaagcatacaacacacacactaaataaaattcataatttataggataa |
34827193 |
T |
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| Q |
114 |
ttaatatatgaaccttccaatgagagaagctagaatcatgtttagtgtggtcacattgctctctcttcaacatttgcatcgtctttaaattaaatgt |
210 |
Q |
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| T |
34827194 |
ttaatatatgaaccttccaatgagagaagctagaatcatgtttagtgtggtcacattgctctctcttcaacatttgcatcgtctttaaattaaatgt |
34827290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 125 - 191
Target Start/End: Original strand, 34836312 - 34836378
Alignment:
| Q |
125 |
accttccaatgagagaagctagaatcatgtttagtgtggtcacattgctctctcttcaacatttgca |
191 |
Q |
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| T |
34836312 |
accttccaatgggagaagctagaatcatgtttagtgtaatcacattgctctctcttcaacatttgca |
34836378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 35334276 - 35334212
Alignment:
| Q |
119 |
atatgaaccttccaatgagagaagctagaatcatgtttagtgtggtcacattgctctctcttcaa |
183 |
Q |
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|||||||||||||| | |||||||||||||||||||| || ||||||||||||| | |||||| |
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| T |
35334276 |
atatgaaccttccagcgggagaagctagaatcatgttttgttcggtcacattgctcccgcttcaa |
35334212 |
T |
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