View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4205_low_44 (Length: 216)
Name: NF4205_low_44
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 29641677 - 29641863
Alignment:
| Q |
13 |
gagatgaagatgataatgaagaaaagaatgatgtgaaacacacaaattgtttgtggctaaaaaccacctcactttgttgatgagatttggttcaaaataa |
112 |
Q |
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| T |
29641677 |
gagatgaagatgataatgaagaaaagaataatgtgaaacacacaaattgtttgtggctaaaaatcacctcactttgttgatgagatttggttcaaaataa |
29641776 |
T |
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| Q |
113 |
tactcacctccaaaagctcatccacttgtgnnnnnnnttcttcttcattcacgttacaacaaattttttaggccccatacttatttt |
199 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29641777 |
tactcacctccaaaagctcatccacttgtgaaaaaaattcttcttcattcacgttacaacaaaatttttaggccccatacttatttt |
29641863 |
T |
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