View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4205_low_6 (Length: 706)
Name: NF4205_low_6
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4205_low_6 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 688; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 11 - 706
Target Start/End: Original strand, 14282536 - 14283231
Alignment:
| Q |
11 |
catcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282536 |
catcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccc |
14282635 |
T |
|
| Q |
111 |
tttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaagtacttcaagtgattttg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282636 |
tttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaagtacttcaagtgattttg |
14282735 |
T |
|
| Q |
211 |
ccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacata |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282736 |
ccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacata |
14282835 |
T |
|
| Q |
311 |
cataacacaaagcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282836 |
cataacacaaagcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcc |
14282935 |
T |
|
| Q |
411 |
tctggttttggccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282936 |
tctggttttggccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggt |
14283035 |
T |
|
| Q |
511 |
aacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaaccgatgg |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14283036 |
aacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaactgatgg |
14283135 |
T |
|
| Q |
611 |
atatgttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaagaacacagataatggaagattaac |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14283136 |
atatgttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatgacaaaaaagaacacagataatggaagattaac |
14283231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 11 - 706
Target Start/End: Original strand, 14320685 - 14321380
Alignment:
| Q |
11 |
catcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccc |
110 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14320685 |
catcatcaaatctgagagctgttgagcatcaacagccatgtgattaacaatttggccagttccatgagcttgtcttgaagaacttgacaaccttaaaccc |
14320784 |
T |
|
| Q |
111 |
tttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaagtacttcaagtgattttg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||| || |||||| |||||||||||||| |||||||| |
|
|
| T |
14320785 |
tttttgtaaactgaagtgattatgctcgaacgaataagcataccgagtttttgagagtggaagttaaattgatgaacactaagtacttcaactgattttg |
14320884 |
T |
|
| Q |
211 |
ccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacata |
310 |
Q |
| |
|
| |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
14320885 |
ctgcaaaaaggacacatatcaaaacaataccttcactagtcgtactatctttccttgatgtgaaatcaacaaaactttgaatcaacaagggaccaacata |
14320984 |
T |
|
| Q |
311 |
cataacacaaagcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcc |
410 |
Q |
| |
|
||||||||||||| |||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14320985 |
cataacacaaagcctaatgactgcaatgaagcccgtgaaagctatttgtttccaaaaacacctaaaaagggtaactccaactggatgcttactgttttcc |
14321084 |
T |
|
| Q |
411 |
tctggttttggccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggt |
510 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || |
|
|
| T |
14321085 |
tctggttttggccaattgctttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggtacatcttctagtttaaggggtgttttgt |
14321184 |
T |
|
| Q |
511 |
aacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaaccgatgg |
610 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||| ||||||| ||||||| ||| ||||| |||||||||||||||||||||||||| |||| || | |
|
|
| T |
14321185 |
aacctttattgagtaaagggttcatccaaaaccaccctgttttagacaaaaatgacgaacaagcataaggactcaaagttctatcggtcgaaattgaccg |
14321284 |
T |
|
| Q |
611 |
atatgttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaagaacacagataatggaagattaac |
706 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14321285 |
atatgttgctactacatcggatattcttatcacgtgaatacctgatgacccttttacggatatcacaaaaaagaacacagataatggaagattaac |
14321380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 13 - 706
Target Start/End: Original strand, 14304296 - 14304989
Alignment:
| Q |
13 |
tcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccctt |
112 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
14304296 |
tcatcaagtctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcctgtcttgaagaacttgacaaccttaaaccctt |
14304395 |
T |
|
| Q |
113 |
tttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaagtacttcaagtgattttgcc |
212 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
14304396 |
tttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaatggaagttgaattgatgaacactaagtacttcaacagattttgct |
14304495 |
T |
|
| Q |
213 |
gcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacataca |
312 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||||| ||||| ||| ||||| ||||||| |
|
|
| T |
14304496 |
gcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttctgtgatgtgaaatcaacaaaactctgaatcagcaatggaccgacataca |
14304595 |
T |
|
| Q |
313 |
taacacaaagcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcctc |
412 |
Q |
| |
|
||||||||||| | |||| |||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14304596 |
taacacaaagcctcatgaatgcaagaaagccagtgaaaactatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactgttttcctc |
14304695 |
T |
|
| Q |
413 |
tggttttggccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaa |
512 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
14304696 |
tggtttcggccaattgttttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaaggggtgtttggtag |
14304795 |
T |
|
| Q |
513 |
cctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaaccgatggat |
612 |
Q |
| |
|
|||||||| || ||||| |||| |||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||| |||||||| |
|
|
| T |
14304796 |
cctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaatgggcataaggactcaaagttctatcgattgaaatcgatggat |
14304895 |
T |
|
| Q |
613 |
atgttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaagaacacagataatggaagattaac |
706 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14304896 |
atgtggctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatgacaaaaaagaacacagataatggaagattaac |
14304989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 11 - 706
Target Start/End: Original strand, 25885367 - 25886062
Alignment:
| Q |
11 |
catcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccc |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
25885367 |
catcatcatatctgagagttgttgagcatcaacagccatgtgattcactatctgtcctgttccatgagcttgtcttgaagaacttgacaacctcagaccc |
25885466 |
T |
|
| Q |
111 |
tttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaagtacttcaagtgattttg |
210 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||| ||||||||| | |||||| |||||||||||| | |||||| ||| || ||||||| |||||||| |
|
|
| T |
25885467 |
tttttgtaaaccgaagtaattatgctcgaacgaataagcataccgattttctgcgagtggaagttgtattgatgaacactcagcacttcaactgattttg |
25885566 |
T |
|
| Q |
211 |
ccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacata |
310 |
Q |
| |
|
| |||||||||||| ||||||||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
25885567 |
ctgcaaaaaggatcaatatcaaaataataccttcactagtagtactatctttccttgatgtgaaatcaacaaaactctgaatcaacagtggaccaatata |
25885666 |
T |
|
| Q |
311 |
cataacacaaagcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcc |
410 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||| | || ||| |||||||||||||||||||||| |
|
|
| T |
25885667 |
cataacacaaagcctaatcattgcaaggaagccagtgaaagctatgtgtttccaaaaacacctaaataaggctactataactggatgcttactattttcc |
25885766 |
T |
|
| Q |
411 |
tctggttttggccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggt |
510 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||||| |||| || |
|
|
| T |
25885767 |
tctggttttggccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaagtgaaggaacatcttctagtttaaggggagttttgt |
25885866 |
T |
|
| Q |
511 |
aacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaaccgatgg |
610 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| || | |||||||| |
|
|
| T |
25885867 |
aacctttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagttggaaccgatgt |
25885966 |
T |
|
| Q |
611 |
atatgttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaagaacacagataatggaagattaac |
706 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |||||||||||| | || |||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
25885967 |
atatgtcgctactacatcggatattcttatcacatgaatccctgatgaccctctaatggatatgacaaaaaagaacaaagataatggaagattaac |
25886062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 706
Target Start/End: Original strand, 44349212 - 44349906
Alignment:
| Q |
11 |
catcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccc |
110 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
44349212 |
catcatcatatctgagagttgttgagcatcaacagacatgtgattcactatctgtcctgttccatgagcttgtcttgaagaacttgacaatcttagaccc |
44349311 |
T |
|
| Q |
111 |
tttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaagtacttcaagtgattttg |
210 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||| | |||||| |||||||||||| | ||||||| ||| |||||||||| |||||||| |
|
|
| T |
44349312 |
tttttgtaaaccaaagtgattatgctcgaacgaataagcataccgattttctgcgagtggaagttgtattgatgac-actcagtacttcaactgattttg |
44349410 |
T |
|
| Q |
211 |
ccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacata |
310 |
Q |
| |
|
| |||||||||||| ||||||||| |||| |||||||| | |||| ||||||||||||||| |||||||||||||||| |||||||| ||||||| ||| |
|
|
| T |
44349411 |
ctgcaaaaaggatcaatatcaaaataatatcttcactagtagtactatctttccttgatgtaaaatcaacaaaactctgaatcaacagtggaccaatata |
44349510 |
T |
|
| Q |
311 |
cataacacaaagcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcc |
410 |
Q |
| |
|
||||||||||||| |||| | |||||||||||| || | ||||||||||||||||||||||||||| | || || ||||||||||||||| |||||| |
|
|
| T |
44349511 |
cataacacaaagcctaatcactgcaaggaagccagtgatagctatgtgtttccaaaaacacctaaataaggctaccataactggatgcttactgttttcc |
44349610 |
T |
|
| Q |
411 |
tctggttttggccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggt |
510 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||| |||| | |||||||||||||||||| |||| || |
|
|
| T |
44349611 |
tctggttttggccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaagtgaaggaatatcttctagtttaaggggagttttgt |
44349710 |
T |
|
| Q |
511 |
aacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaaccgatgg |
610 |
Q |
| |
|
|||| ||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| || | ||| |||| |
|
|
| T |
44349711 |
aaccgttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagtcggaactgatgt |
44349810 |
T |
|
| Q |
611 |
atatgttgctactacatcggatattcttatcacatgaatacctgatgacccttttattgatatggcaaaaaagaacacagataatggaagattaac |
706 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| |||||||||||| | || |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
44349811 |
atatgtcgctactacatcggatattcttatcacaagaatccctgatgaccctctaatggatatgacaaaaaagaacgcagataatggaagattaac |
44349906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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