View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4205_low_9 (Length: 575)

Name: NF4205_low_9
Description: NF4205
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4205_low_9
NF4205_low_9
[»] chr7 (48 HSPs)
chr7 (365-562)||(37405503-37405700)
chr7 (383-506)||(28124697-28124820)
chr7 (383-506)||(28126524-28126647)
chr7 (383-506)||(4895583-4895706)
chr7 (383-557)||(20046554-20046729)
chr7 (383-506)||(44963162-44963285)
chr7 (439-562)||(34844107-34844231)
chr7 (62-212)||(18212986-18213137)
chr7 (500-562)||(21631283-21631345)
chr7 (54-150)||(32287408-32287504)
chr7 (368-456)||(25471931-25472018)
chr7 (510-570)||(21633236-21633296)
chr7 (71-150)||(39138462-39138541)
chr7 (54-131)||(598245-598322)
chr7 (511-560)||(21631055-21631104)
chr7 (500-561)||(29598027-29598088)
chr7 (62-150)||(27093366-27093454)
chr7 (62-150)||(27184847-27184935)
chr7 (57-144)||(33994236-33994323)
chr7 (80-150)||(5835265-5835335)
chr7 (54-148)||(15680829-15680923)
chr7 (500-562)||(21633014-21633076)
chr7 (444-560)||(36989502-36989621)
chr7 (99-147)||(640134-640182)
chr7 (54-150)||(20549809-20549905)
chr7 (54-150)||(21880170-21880266)
chr7 (99-150)||(9482952-9483003)
chr7 (54-148)||(43027409-43027508)
chr7 (110-209)||(27945000-27945099)
chr7 (62-150)||(12278853-12278941)
chr7 (54-114)||(32093959-32094020)
chr7 (497-561)||(3233013-3233077)
chr7 (54-114)||(5409776-5409836)
chr7 (54-114)||(9778559-9778619)
chr7 (110-150)||(22602711-22602751)
chr7 (369-442)||(4880196-4880271)
chr7 (57-120)||(26033398-26033461)
chr7 (110-213)||(1433409-1433512)
chr7 (114-213)||(21140987-21141086)
chr7 (62-176)||(22868034-22868153)
chr7 (163-213)||(23859985-23860035)
chr7 (54-120)||(24339701-24339767)
chr7 (62-148)||(26733324-26733410)
chr7 (62-150)||(1401043-1401129)
chr7 (80-133)||(21864843-21864896)
chr7 (89-134)||(22484059-22484104)
chr7 (181-213)||(9408413-9408445)
chr7 (383-415)||(44962282-44962314)
[»] chr6 (55 HSPs)
chr6 (369-562)||(15868377-15868570)
chr6 (368-562)||(15866564-15866758)
chr6 (369-562)||(33866084-33866277)
chr6 (369-562)||(33869231-33869424)
chr6 (383-506)||(5376876-5377000)
chr6 (383-506)||(5378731-5378855)
chr6 (385-506)||(1088762-1088883)
chr6 (383-506)||(19645409-19645532)
chr6 (368-561)||(14611068-14611259)
chr6 (383-480)||(15149180-15149277)
chr6 (54-213)||(18367792-18367961)
chr6 (369-454)||(32079895-32079980)
chr6 (54-204)||(34595098-34595248)
chr6 (411-489)||(9415095-9415173)
chr6 (54-213)||(8776913-8777077)
chr6 (54-215)||(16488524-16488690)
chr6 (54-190)||(9658857-9658994)
chr6 (54-148)||(13789174-13789268)
chr6 (54-148)||(13797793-13797887)
chr6 (435-561)||(14618975-14619099)
chr6 (54-148)||(28152118-28152212)
chr6 (369-442)||(14620496-14620569)
chr6 (110-220)||(16766645-16766755)
chr6 (62-114)||(12696383-12696435)
chr6 (383-506)||(28884363-28884487)
chr6 (62-190)||(16833286-16833414)
chr6 (54-133)||(32978844-32978923)
chr6 (62-209)||(853812-853959)
chr6 (54-148)||(33001234-33001328)
chr6 (110-212)||(9027134-9027236)
chr6 (97-149)||(7740660-7740712)
chr6 (104-213)||(7938071-7938180)
chr6 (54-150)||(13360318-13360413)
chr6 (54-150)||(7996327-7996419)
chr6 (54-150)||(8022382-8022474)
chr6 (54-173)||(17327595-17327719)
chr6 (99-150)||(19040370-19040421)
chr6 (104-150)||(7265588-7265634)
chr6 (100-150)||(7377997-7378047)
chr6 (109-200)||(19044432-19044523)
chr6 (499-557)||(24544733-24544791)
chr6 (54-148)||(28715315-28715409)
chr6 (94-131)||(30851637-30851674)
chr6 (99-176)||(5626686-5626763)
chr6 (110-150)||(9025495-9025535)
chr6 (88-148)||(24645501-24645561)
chr6 (110-148)||(7027262-7027300)
chr6 (54-120)||(8365453-8365519)
chr6 (54-120)||(10339059-10339125)
chr6 (54-108)||(31384990-31385044)
chr6 (163-220)||(426568-426625)
chr6 (94-150)||(31579212-31579266)
chr6 (110-150)||(9617452-9617492)
chr6 (110-150)||(9629401-9629441)
chr6 (110-150)||(26562707-26562747)
[»] chr1 (61 HSPs)
chr1 (369-562)||(3284487-3284680)
chr1 (369-562)||(3282786-3282979)
chr1 (369-562)||(9312014-9312207)
chr1 (369-562)||(9310397-9310590)
chr1 (368-562)||(902061-902254)
chr1 (383-506)||(17449310-17449433)
chr1 (383-506)||(16808688-16808811)
chr1 (369-475)||(37664695-37664801)
chr1 (369-475)||(37674417-37674523)
chr1 (54-213)||(10577680-10577839)
chr1 (369-475)||(37702171-37702277)
chr1 (369-442)||(5924947-5925020)
chr1 (62-220)||(1486657-1486820)
chr1 (54-148)||(5898211-5898305)
chr1 (54-213)||(42359394-42359553)
chr1 (62-220)||(2896074-2896232)
chr1 (54-176)||(37598824-37598945)
chr1 (430-506)||(48941646-48941722)
chr1 (54-120)||(25934675-25934741)
chr1 (54-148)||(51410045-51410139)
chr1 (54-146)||(12918967-12919059)
chr1 (63-150)||(40181889-40181976)
chr1 (62-148)||(18190061-18190147)
chr1 (54-148)||(18337349-18337443)
chr1 (62-148)||(40258886-40258972)
chr1 (54-149)||(29163326-29163421)
chr1 (54-121)||(32461398-32461465)
chr1 (62-213)||(41597423-41597574)
chr1 (383-434)||(48940675-48940726)
chr1 (63-148)||(1815277-1815362)
chr1 (54-150)||(36878479-36878580)
chr1 (54-188)||(46348328-46348462)
chr1 (62-150)||(30749858-30749946)
chr1 (62-150)||(30771309-30771397)
chr1 (54-186)||(22515832-22515964)
chr1 (54-120)||(9828103-9828169)
chr1 (113-176)||(25934608-25934671)
chr1 (116-213)||(398772-398869)
chr1 (110-150)||(34371731-34371771)
chr1 (110-150)||(44482248-44482288)
chr1 (111-150)||(1864882-1864921)
chr1 (118-186)||(12443469-12443537)
chr1 (375-422)||(36580553-36580600)
chr1 (158-205)||(40917714-40917761)
chr1 (71-150)||(43492456-43492535)
chr1 (104-150)||(2784574-2784620)
chr1 (94-148)||(13997903-13997957)
chr1 (104-150)||(23636044-23636090)
chr1 (54-148)||(38078606-38078700)
chr1 (54-120)||(40917808-40917874)
chr1 (54-120)||(47989556-47989622)
chr1 (111-209)||(10572591-10572689)
chr1 (101-150)||(14332634-14332683)
chr1 (62-150)||(27965953-27966039)
chr1 (96-133)||(39130754-39130791)
chr1 (103-148)||(52903269-52903314)
chr1 (110-150)||(7918212-7918252)
chr1 (103-147)||(13436479-13436523)
chr1 (110-150)||(20157351-20157391)
chr1 (110-150)||(25361904-25361944)
chr1 (94-150)||(28674818-28674874)
[»] scaffold0251 (1 HSPs)
scaffold0251 (369-570)||(6211-6412)
[»] chr5 (40 HSPs)
chr5 (368-562)||(39787112-39787306)
chr5 (54-213)||(6401453-6401623)
chr5 (54-132)||(30098983-30099061)
chr5 (54-215)||(21814220-21814386)
chr5 (54-211)||(21191001-21191158)
chr5 (375-506)||(25076224-25076356)
chr5 (375-506)||(25134193-25134325)
chr5 (54-150)||(30502333-30502429)
chr5 (54-150)||(30542676-30542772)
chr5 (54-148)||(21576690-21576784)
chr5 (56-176)||(42029744-42029864)
chr5 (53-134)||(26312803-26312884)
chr5 (498-561)||(33689980-33690043)
chr5 (54-148)||(43564901-43564995)
chr5 (94-150)||(18421826-18421882)
chr5 (88-148)||(42893380-42893440)
chr5 (94-213)||(6770498-6770615)
chr5 (99-150)||(28588664-28588715)
chr5 (110-209)||(37328845-37328944)
chr5 (54-124)||(39268543-39268613)
chr5 (164-209)||(42469180-42469225)
chr5 (110-150)||(3966521-3966561)
chr5 (439-483)||(6569888-6569932)
chr5 (54-150)||(21194068-21194164)
chr5 (56-120)||(21522809-21522873)
chr5 (56-120)||(21533375-21533439)
chr5 (56-120)||(21542089-21542153)
chr5 (54-150)||(27932253-27932349)
chr5 (158-213)||(15382432-15382487)
chr5 (158-213)||(21522705-21522760)
chr5 (158-213)||(21533271-21533326)
chr5 (158-213)||(41995426-41995481)
chr5 (81-131)||(23012380-23012430)
chr5 (99-148)||(15884008-15884057)
chr5 (62-131)||(32630688-32630757)
chr5 (113-150)||(39758290-39758327)
chr5 (110-150)||(6471890-6471930)
chr5 (54-150)||(17123066-17123161)
chr5 (54-114)||(30098391-30098451)
chr5 (110-150)||(41091258-41091298)
[»] chr4 (53 HSPs)
chr4 (368-560)||(23985758-23985949)
chr4 (369-561)||(3529202-3529393)
chr4 (383-506)||(7040360-7040483)
chr4 (383-506)||(23564784-23564907)
chr4 (383-506)||(23566458-23566581)
chr4 (383-506)||(52520600-52520723)
chr4 (383-506)||(18656107-18656230)
chr4 (383-506)||(52518758-52518881)
chr4 (369-483)||(52545234-52545347)
chr4 (410-506)||(54296454-54296550)
chr4 (369-561)||(24807409-24807600)
chr4 (54-201)||(5414106-5414264)
chr4 (54-212)||(23292931-23293089)
chr4 (383-475)||(3274580-3274672)
chr4 (423-562)||(51295202-51295341)
chr4 (500-562)||(5653226-5653288)
chr4 (62-148)||(49431046-49431132)
chr4 (54-212)||(12895219-12895377)
chr4 (369-433)||(18395816-18395880)
chr4 (54-220)||(36635272-36635444)
chr4 (54-120)||(30982812-30982878)
chr4 (94-213)||(35157970-35158089)
chr4 (369-416)||(18320063-18320110)
chr4 (369-416)||(18398573-18398620)
chr4 (76-150)||(9996858-9996932)
chr4 (54-108)||(19482739-19482793)
chr4 (54-148)||(34306749-34306843)
chr4 (94-148)||(54580008-54580062)
chr4 (74-150)||(19097859-19097935)
chr4 (54-150)||(35161054-35161150)
chr4 (57-115)||(848015-848073)
chr4 (88-150)||(8402721-8402783)
chr4 (80-150)||(8423689-8423759)
chr4 (54-120)||(12323968-12324034)
chr4 (54-148)||(12797283-12797377)
chr4 (102-140)||(20950420-20950458)
chr4 (54-120)||(22234824-22234890)
chr4 (62-148)||(28964201-28964287)
chr4 (54-119)||(24613635-24613700)
chr4 (99-148)||(40179626-40179675)
chr4 (54-114)||(3947706-3947766)
chr4 (80-148)||(29205464-29205532)
chr4 (54-133)||(2361920-2361999)
chr4 (482-561)||(18395698-18395776)
chr4 (110-213)||(13783236-13783339)
chr4 (54-108)||(29205528-29205582)
chr4 (94-148)||(36509077-36509131)
chr4 (74-120)||(44362714-44362760)
chr4 (54-148)||(715550-715646)
chr4 (54-148)||(752876-752972)
chr4 (109-150)||(5775358-5775399)
chr4 (62-150)||(30103310-30103397)
chr4 (114-150)||(40613468-40613504)
[»] scaffold0057 (1 HSPs)
scaffold0057 (360-506)||(58762-58908)
[»] chr8 (44 HSPs)
chr8 (383-506)||(30224229-30224352)
chr8 (383-506)||(5567425-5567548)
chr8 (383-506)||(3375532-3375655)
chr8 (383-506)||(6428739-6428862)
chr8 (383-506)||(25249002-25249128)
chr8 (383-498)||(3379231-3379346)
chr8 (383-506)||(31032112-31032231)
chr8 (54-213)||(43737756-43737917)
chr8 (369-453)||(14935562-14935646)
chr8 (54-148)||(3951481-3951575)
chr8 (412-506)||(36535941-36536035)
chr8 (54-120)||(34450966-34451032)
chr8 (54-213)||(926733-926892)
chr8 (54-150)||(3025569-3025665)
chr8 (62-150)||(20679348-20679436)
chr8 (57-150)||(14134717-14134810)
chr8 (62-188)||(36450707-36450833)
chr8 (55-150)||(33405330-33405425)
chr8 (110-149)||(34451038-34451077)
chr8 (54-120)||(29510238-29510304)
chr8 (62-148)||(31557016-31557102)
chr8 (110-220)||(2572057-2572167)
chr8 (57-150)||(40332209-40332302)
chr8 (62-134)||(8293859-8293931)
chr8 (95-150)||(4786324-4786379)
chr8 (163-220)||(24857957-24858014)
chr8 (54-150)||(26902109-26902216)
chr8 (102-188)||(31236570-31236656)
chr8 (94-146)||(9414860-9414912)
chr8 (54-133)||(5813627-5813706)
chr8 (158-213)||(22651931-22651986)
chr8 (57-131)||(126295-126369)
chr8 (110-148)||(11927087-11927125)
chr8 (104-150)||(13844591-13844637)
chr8 (54-120)||(22652035-22652101)
chr8 (104-150)||(34897103-34897149)
chr8 (110-147)||(8847277-8847314)
chr8 (105-150)||(12606825-12606870)
chr8 (94-150)||(37283797-37283851)
chr8 (80-129)||(44462166-44462215)
chr8 (80-129)||(44469699-44469748)
chr8 (380-416)||(4676048-4676083)
chr8 (158-210)||(24196646-24196698)
chr8 (54-150)||(31580072-31580168)
[»] chr2 (37 HSPs)
chr2 (383-506)||(29758119-29758242)
chr2 (54-150)||(24009314-24009409)
chr2 (62-190)||(20242680-20242808)
chr2 (500-561)||(20957729-20957790)
chr2 (500-560)||(20957557-20957617)
chr2 (54-133)||(18840958-18841037)
chr2 (54-148)||(2438664-2438758)
chr2 (54-179)||(36096309-36096445)
chr2 (54-134)||(28596503-28596583)
chr2 (54-190)||(15972851-15972987)
chr2 (54-148)||(12224243-12224337)
chr2 (110-212)||(34784983-34785085)
chr2 (54-131)||(34993927-34994004)
chr2 (94-220)||(40361739-40361865)
chr2 (68-147)||(5367213-5367292)
chr2 (57-148)||(5040754-5040845)
chr2 (63-150)||(37411198-37411285)
chr2 (110-212)||(18054804-18054907)
chr2 (58-144)||(29176442-29176528)
chr2 (54-119)||(26769571-26769636)
chr2 (62-187)||(41843422-41843552)
chr2 (54-134)||(21091757-21091837)
chr2 (95-150)||(18276539-18276594)
chr2 (69-148)||(31808097-31808176)
chr2 (376-434)||(18739664-18739722)
chr2 (456-506)||(20516053-20516103)
chr2 (54-120)||(30717464-30717530)
chr2 (54-120)||(35056927-35056993)
chr2 (54-120)||(37419802-37419868)
chr2 (54-148)||(37558997-37559091)
chr2 (80-148)||(28677929-28678002)
chr2 (103-148)||(34691799-34691844)
chr2 (103-148)||(34714211-34714256)
chr2 (109-150)||(38355887-38355928)
chr2 (110-150)||(18889592-18889632)
chr2 (88-148)||(30404829-30404889)
chr2 (110-150)||(44860338-44860378)
[»] chr3 (47 HSPs)
chr3 (383-506)||(17402891-17403015)
chr3 (391-557)||(6789627-6789791)
chr3 (54-150)||(13845470-13845566)
chr3 (428-506)||(1140045-1140123)
chr3 (54-176)||(35222930-35223052)
chr3 (54-150)||(2941576-2941672)
chr3 (54-203)||(55401040-55401189)
chr3 (56-213)||(15999957-16000120)
chr3 (62-148)||(40993288-40993374)
chr3 (62-204)||(28917965-28918109)
chr3 (54-150)||(8789493-8789591)
chr3 (64-176)||(10954944-10955056)
chr3 (57-185)||(18426932-18427060)
chr3 (383-483)||(20302625-20302725)
chr3 (383-475)||(20327167-20327259)
chr3 (110-150)||(14028025-14028065)
chr3 (62-213)||(7171457-7171607)
chr3 (54-148)||(20503485-20503579)
chr3 (88-150)||(25093520-25093582)
chr3 (158-213)||(10335335-10335390)
chr3 (103-148)||(7928470-7928515)
chr3 (94-150)||(11251996-11252050)
chr3 (55-120)||(25064966-25065031)
chr3 (54-146)||(25775531-25775621)
chr3 (56-144)||(3631708-3631796)
chr3 (114-211)||(4990972-4991069)
chr3 (54-121)||(25074841-25074909)
chr3 (239-279)||(46299764-46299804)
chr3 (54-149)||(8842348-8842443)
chr3 (80-119)||(14338454-14338493)
chr3 (79-150)||(45451571-45451642)
chr3 (62-120)||(4987233-4987291)
chr3 (54-120)||(14209172-14209238)
chr3 (52-114)||(16192665-16192727)
chr3 (104-150)||(20691337-20691383)
chr3 (54-120)||(41961584-41961650)
chr3 (24-54)||(46299717-46299747)
chr3 (523-560)||(9032760-9032797)
chr3 (365-406)||(17579280-17579321)
chr3 (426-483)||(41874441-41874497)
chr3 (158-213)||(750667-750723)
chr3 (383-415)||(1140012-1140044)
chr3 (94-134)||(6780404-6780444)
chr3 (54-114)||(14216957-14217017)
chr3 (54-114)||(14223086-14223146)
chr3 (54-114)||(27505305-27505365)
chr3 (302-330)||(46300108-46300136)
[»] scaffold0006 (1 HSPs)
scaffold0006 (368-483)||(39129-39243)
[»] scaffold0652 (1 HSPs)
scaffold0652 (54-213)||(407-566)
[»] scaffold0116 (1 HSPs)
scaffold0116 (110-213)||(9853-9956)
[»] scaffold0053 (1 HSPs)
scaffold0053 (54-220)||(8746-8912)
[»] scaffold0306 (1 HSPs)
scaffold0306 (54-209)||(13359-13520)
[»] scaffold0152 (1 HSPs)
scaffold0152 (54-209)||(21807-21968)
[»] scaffold0050 (1 HSPs)
scaffold0050 (54-148)||(70298-70392)
[»] scaffold0623 (2 HSPs)
scaffold0623 (110-150)||(5997-6037)
scaffold0623 (56-107)||(5932-5983)
[»] scaffold0361 (1 HSPs)
scaffold0361 (54-178)||(14520-14641)
[»] scaffold0022 (1 HSPs)
scaffold0022 (88-150)||(90861-90923)
[»] scaffold0279 (1 HSPs)
scaffold0279 (94-150)||(17788-17844)
[»] scaffold0083 (1 HSPs)
scaffold0083 (54-134)||(45475-45555)
[»] scaffold0021 (1 HSPs)
scaffold0021 (112-220)||(130430-130538)
[»] scaffold0003 (1 HSPs)
scaffold0003 (54-120)||(241653-241719)
[»] scaffold0793 (1 HSPs)
scaffold0793 (54-148)||(4826-4922)
[»] scaffold0380 (1 HSPs)
scaffold0380 (54-107)||(8662-8715)
[»] scaffold0123 (1 HSPs)
scaffold0123 (113-150)||(44529-44566)
[»] scaffold0086 (1 HSPs)
scaffold0086 (55-120)||(2987-3052)
[»] scaffold0036 (1 HSPs)
scaffold0036 (110-150)||(9748-9788)
[»] scaffold0020 (1 HSPs)
scaffold0020 (110-150)||(135313-135353)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 48)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 365 - 562
Target Start/End: Complemental strand, 37405700 - 37405503
Alignment:
Q  365 tttttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaat 464  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  37405700 tttttattagagtatgaataatcaactatagttagttgatagataaactagagttagtagcttggttagaagttagttagagttagttactcaaactaat 37405601  T
Q  465 ctctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37405600 ctctatatataggaacactattgtactcattcactatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatgaataca 37405503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 383 - 506
Target Start/End: Complemental strand, 28124820 - 28124697
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28124820 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 28124721  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| |||||||| |||||||    
T  28124720 tattgtactcattcatcatctttt 28124697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 383 - 506
Target Start/End: Complemental strand, 28126647 - 28126524
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28126647 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 28126548  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| |||||||| |||||||    
T  28126547 tattgtactcattcatcatctttt 28126524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 4895583 - 4895706
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  4895583 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttatttactcaaactaatctctatatataggaacac 4895682  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| |||||||| |||||||    
T  4895683 tattgtactcattcatcatctttt 4895706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 383 - 557
Target Start/End: Complemental strand, 20046729 - 20046554
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc-tatatataggaaca 481  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  20046729 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaaca 20046630  T
Q  482 ctattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatga 557  Q
    |||||||| ||||||| ||||||||  | |||||| |    ||||| ||||||  ||||| |||||||||||||||    
T  20046629 ctattgtactcattcaatatctttttatcaatctattcatttctacaatgagtttctatgagtatctcccacatga 20046554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 44963162 - 44963285
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  44963162 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttagttagagttagttactcaaattaatctctatatataggaacac 44963261  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| |||||||| |||||||    
T  44963262 tattgtactcattcatcatctttt 44963285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 439 - 562
Target Start/End: Original strand, 34844107 - 34844231
Alignment:
Q  439 agttggagttagttactcaaactaatctctatatataggaacactattgtattcattcatt--atcttttgttaaatctagtttactctactatgagtca 536  Q
    |||| ||||||||||| ||| |||| |||||||||||||||||||  |||||   |||| |  ||||||| | |||||||||||||||||||||||||||    
T  34844107 agttagagttagttacacaa-ctaaactctatatataggaacactcatgtatcatttcaatccatcttttatcaaatctagtttactctactatgagtca 34844205  T
Q  537 ctatgggtatctcccacatgaataca 562  Q
    ||||||||||||||||||||||||||    
T  34844206 ctatgggtatctcccacatgaataca 34844231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 62 - 212
Target Start/End: Original strand, 18212986 - 18213137
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct-nnnnnnntta 160  Q
    |||||||| |||||||| ||||||||||||| || | | |||||||| ||||||||||||||||||||||||  ||| |||||||||||        |||    
T  18212986 acactcctcggataaggcgtgtccccgtgtcagaaaggggtcgtgtccgacaccgacacatataattacactaaattatgtgattttctaaaaaaaatta 18213085  T
Q  161 gttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatc 212  Q
    ||||||||||||| || || |||||||||| |  ||||| ||||| ||||||    
T  18213086 gttgtgtcggcgtatcagtgtccgtgtcgtgtctggtgttcgtgttcgtatc 18213137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 21631345 - 21631283
Alignment:
Q  500 atcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21631345 atcttttatcaaatctagtttactctactatgagtcactatgggtatctcccacattaataca 21631283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 32287408 - 32287504
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| |||||||| |||| ||||||||||| ||||| ||||| |||| |||| |||||||||||||||| || ||||| ||| |||||||||||    
T  32287408 aagcacggacactcctcggattaggtgtgtcccggtgtcggacacttgtcatgtccgacaccgacacatatacttgcactgaattatgtgattttct 32287504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 456
Target Start/End: Complemental strand, 25472018 - 25471931
Alignment:
Q  368 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggtt-agaagttagttggagttagttactc 456  Q
    |||||| |||||||||||| ||||||||||||||||||||| ||||||| ||||||| |||||| || ||||||  ||||||||||||||    
T  25472018 ttattatagtatgaataattaactatagttagttgataggttaactagagttagtaggttggttcagtagttag--ggagttagttactc 25471931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 510 - 570
Target Start/End: Complemental strand, 21633296 - 21633236
Alignment:
Q  510 aaatctagtttactctactatgagtcactatgggtatctcccacatgaatacatctgtgct 570  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||| ||||    
T  21633296 aaatctaatttactctactatgggtcactatgagtatctcccacatgaatacatctatgct 21633236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 39138541 - 39138462
Alignment:
Q  71 ggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||| ||||||||||||  |||| || ||||||| |||||||||| |||||||||||||| ||| |||||||||||    
T  39138541 ggataaggcgtgtccccgtgttagacatgtatcgtgtccgacaccgacatatataattacactgaattatgtgattttct 39138462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 598322 - 598245
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattaca 131  Q
    ||||||| ||||| || |||| ||| ||||||| ||||| ||||||||||||||||||||||||||| || |||||||    
T  598322 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacttacaattaca 598245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 511 - 560
Target Start/End: Complemental strand, 21631104 - 21631055
Alignment:
Q  511 aatctagtttactctactatgagtcactatgggtatctcccacatgaata 560  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  21631104 aatctagtttactctactatgagtcactatgtgtatctcccacattaata 21631055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 500 - 561
Target Start/End: Complemental strand, 29598088 - 29598027
Alignment:
Q  500 atcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 561  Q
    ||||||| | |||||||||| | ||||||||||||| |||||||||||||||||||||||||    
T  29598088 atcttttatcaaatctagttcattctactatgagtctctatgggtatctcccacatgaatac 29598027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 27093366 - 27093454
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||| | |||| ||||||||||  ||||| ||||| |||||||||| |||||||| ||||||||||||||  ||| |||||||||||    
T  27093366 acactcatcggattaggtgtgtcctagtgtcggacacatgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttct 27093454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 27184935 - 27184847
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||| | |||| ||||||||||  ||||| ||||| |||||||||| |||||||| ||||||||||||||  ||| |||||||||||    
T  27184935 acactcatcggattaggtgtgtcctagtgtcggacacatgtcgtgtctaacaccgacgcatataattacactaaattatgtgattttct 27184847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 33994323 - 33994236
Alignment:
Q  57 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtga 144  Q
    |||||||||||||||||| ||| ||||| | ||||  |||| |||||||||||||||||||||| | ||||| ||||| ||| |||||    
T  33994323 cacgaacactccttggattaggcgtgtctcggtgttggacatgtgtcgtgtctgacaccgacacttgtaattgcactgaattatgtga 33994236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 5835335 - 5835265
Alignment:
Q  80 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| || || ||||| |||| |||||||||||||||||||||||||||||| ||| ||| |||||||    
T  5835335 gtgtcccggtatcagacacatgtcatgtctgacaccgacacatataattacactgaattatgttattttct 5835265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 15680923 - 15680829
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| | || ||  ||||| | ||||| ||||||||||||||| ||||||||||| ||||||||||||  ||| |||||||||    
T  15680923 aagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactaaattatgtgatttt 15680829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 21633076 - 21633014
Alignment:
Q  500 atcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||||| | |||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  21633076 atcttttatcaaatatagattattctactatgagtcactatgtgtatctcccacatgaataca 21633014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 444 - 560
Target Start/End: Complemental strand, 36989621 - 36989502
Alignment:
Q  444 gagttagttactcaaactaatctctatatataggaacactattgtattcatt---cattatcttttgttaaatctagtttactctactatgagtcactat 540  Q
    |||||||||| |||||||||||||||||||||| |||| ||||||| |||||    | |||||||| | ||||||| |||| | || ||| ||||| |||    
T  36989621 gagttagttattcaaactaatctctatatatagaaacattattgtagtcattatggaatatcttttatcaaatctaatttattttattataagtcagtat 36989522  T
Q  541 gggtatctcccacatgaata 560  Q
    | |||||| ||| |||||||    
T  36989521 gagtatcttccagatgaata 36989502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 640182 - 640134
Alignment:
Q  99 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgattt 147  Q
    ||||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  640182 gtgtcgtatctgacaccgacacatataattacactgaattatgtgattt 640134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 20549905 - 20549809
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||  ||||||| |||| ||| ||||| |  |||| |||| |||| ||||| ||||||||||||||||||||||||| |||  ||||||||||    
T  20549905 aagcacgggcactcctcggattaggcgtgtctcattgtcggacatgtgttgtgtccgacaccgacacatataattacactgaattacgtgattttct 20549809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 21880266 - 21880170
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| ||||| || |||| ||| ||||||  ||||| |||| |||||||||| ||||||||||| | ||||||||||| ||| ||| |||||||    
T  21880266 aagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtaattttct 21880170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 9483003 - 9482952
Alignment:
Q  99 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||| ||| ||||||||||||||||||||||||| ||| |||||||||||    
T  9483003 gtgtcgcgtccgacaccgacacatataattacactgaattgtgtgattttct 9482952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 43027409 - 43027508
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtct-----gacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||| | |||| ||| ||||||| ||||| ||||||||||||||||     ||||||||||| | || |||||||||||| |||||||||    
T  43027409 aagcacggacactcatcggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacacgacaccgacacttgtatttacactgcattatgtgatttt 43027508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 209
Target Start/End: Complemental strand, 27945099 - 27945000
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    ||||||||||| | ||||||||||| ||| ||| |||||||       ||||| ||||||||||||| || |||||||||| | |||||||||| |||||    
T  27945099 gacaccgacacttgtaattacactgaattatgtaattttctcaaattattagtggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtatccgt 27945000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 12278941 - 12278853
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcg-tgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||| |||| ||||||||||| ||||| |||||| || | |||| ||||| ||||||||||||||||||| ||| ||| |||||||    
T  12278941 acactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacac-gacacatataattacactgaattatgtcattttct 12278853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 32093959 - 32094020
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtcccc-gtgtccgacacgtgtcgtgtctgacac 114  Q
    |||||||||||||||| |||| ||| |||||||| ||||| ||||||||||||||| |||||    
T  32093959 aagcacgaacactcctcggattaggcgtgtccccggtgtcggacacgtgtcgtgtccgacac 32094020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 497 - 561
Target Start/End: Original strand, 3233013 - 3233077
Alignment:
Q  497 attatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 561  Q
    |||||||||| |||||||||||| | |||||||| | ||  ||||| ||||||||||||||||||    
T  3233013 attatcttttattaaatctagttcattctactataaatctgtatggatatctcccacatgaatac 3233077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 5409776 - 5409836
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 114  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| ||||||||||||||| |||||    
T  5409776 aagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacac 5409836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 9778619 - 9778559
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 114  Q
    ||||||| ||||||||||||| ||| ||||||| ||||| ||||||||| ||||| |||||    
T  9778619 aagcacggacactccttggattaggcgtgtcccggtgtcggacacgtgttgtgtccgacac 9778559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 22602711 - 22602751
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  22602711 gacaccgacacatataattacactgaattatgtgattttct 22602751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 442
Target Start/End: Original strand, 4880196 - 4880271
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgat-aggtaaactagaattagtagc-ttggttagaagttagtt 442  Q
    ||||| ||||||||||||| |||||||||||||||| |||| |||||   ||| |||| |||||||||||||||||    
T  4880196 tattaaagtatgaataatcgactatagttagttgataaggttaactaacgttaatagctttggttagaagttagtt 4880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 26033398 - 26033461
Alignment:
Q  57 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    |||| |||||||| |||| ||||||||| | || || |||||||||| ||||||||||||||||    
T  26033398 cacggacactcctcggattaggtgtgtcgcggtatcggacacgtgtcatgtctgacaccgacac 26033461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 1433512 - 1433409
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    |||||||||||||||||||||||   ||  |||||||||||       |||   |||||||||||||  | |||||||||| ||||||||||||| ||||    
T  1433512 gacaccgacacatataattacaccaaatgatgtgattttctcaaattattaacggtgtcggcgtgtcaatgtccgtgtcgtgttcggtgtccgtgcccgt 1433413  T
Q  210 atcc 213  Q
    ||||    
T  1433412 atcc 1433409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 21140987 - 21141086
Alignment:
Q  114 ccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    ||||||| |||||| |||||| ||| | |||||||||       ||||| |||||| |||||| |  |||||||||| | ||||||||||||||||||||    
T  21140987 ccgacacctataatcacactgaattatatgattttcttaaattattagtggtgtcgacgtgtcggcgtccgtgtcgtgtacggtgtccgtgtccgtatcc 21141086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 22868153 - 22868034
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc-----tgacaccgacacatataattacactgcattttgtgattttctnnnnnn 156  Q
    |||||||| |||| | ||||||||| ||||| ||||||||| ||||      ||| || ||||||||||||||||||| ||| |||||||||||          
T  22868153 acactcctcggattatgtgtgtcccggtgtctgacacgtgttgtgttgtgtttgatactgacacatataattacactgaattatgtgattttctcatatt 22868054  T
Q  157 nttagttgtgtcggcgtgtc 176  Q
     ||||| |||||||||||||    
T  22868053 attagtggtgtcggcgtgtc 22868034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 23859985 - 23860035
Alignment:
Q  163 tgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    |||||||| ||||| |||||| |||||| |||| |||||||||||||||||    
T  23859985 tgtgtcggtgtgtcagtatccatgtcgtgttcgatgtccgtgtccgtatcc 23860035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 24339767 - 24339701
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    |||||||  ||||||| |||| ||| ||||||| ||||| || |||||||||||| |||||||||||    
T  24339767 aagcacgggcactcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacac 24339701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 26733410 - 26733324
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||| ||| |||| ||| |||| ||||| || |||| | |||||||| ||||||||||||| |||||| |||| ||| |||||||||    
T  26733410 acacccctcggattaggcgtgttcccgtatcggacatgcgtcgtgtccgacaccgacacatttaattagactgaattatgtgatttt 26733324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 1401129 - 1401043
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||  ||| |||||||||||  |||| ||||  ||||||||| |||||||| || ||||||||||||| ||| ||||| |||||    
T  1401129 acactcctcagattaggtgtgtcccgatgtcggaca--tgtcgtgtcggacaccgatacttataattacactgaattatgtgagtttct 1401043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Complemental strand, 21864896 - 21864843
Alignment:
Q  80 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacact 133  Q
    ||||||| ||||| ||||||||||||||| |||| |||||| | ||||||||||    
T  21864896 gtgtcccggtgtcggacacgtgtcgtgtccgacagcgacacttgtaattacact 21864843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 134
Target Start/End: Complemental strand, 22484104 - 22484059
Alignment:
Q  89 tgtccgacacgtgtcgtgtctgacaccgacacatataattacactg 134  Q
    |||| |||| ||||| ||||||||||||||||||||||||| ||||    
T  22484104 tgtcggacatgtgtcatgtctgacaccgacacatataattatactg 22484059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 9408413 - 9408445
Alignment:
Q  181 tccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    |||||||||| ||||||||||||||||||||||    
T  9408413 tccgtgtcgtattcggtgtccgtgtccgtatcc 9408445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 44962282 - 44962314
Alignment:
Q  383 taatcaactatagttagttgataggtaaactag 415  Q
    ||||||||||||||||||||||| |||||||||    
T  44962282 taatcaactatagttagttgataagtaaactag 44962314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 55)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 369 - 562
Target Start/End: Original strand, 15868377 - 15868570
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  15868377 tattagagtatgaataatcaactatagttagttgataggtaaactagagttaatagcttggttagaagttagttagagttagttactcaaactaatctct 15868476  T
Q  469 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15868477 atatataggaacactattgtactcattcattatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatgaataca 15868570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 368 - 562
Target Start/End: Original strand, 15866564 - 15866758
Alignment:
Q  368 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||||||||||    
T  15866564 ttattagagtatgaataatcaactatagttagttgataggtaaactagagttaatagcttgggtagaagttagttagagttagttactcaaactaatctc 15866663  T
Q  468 tatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15866664 tatatttaggaacactattgtactcattcattatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatgaataca 15866758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 369 - 562
Target Start/End: Original strand, 33866084 - 33866277
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  33866084 tattagagtattaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcagactaatctct 33866183  T
Q  469 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  33866184 atatataggaacactattgtactcattcactatcttttgttaaatctagtttactctcctatgggtcactatgggtatctcccacatgaataca 33866277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 369 - 562
Target Start/End: Original strand, 33869231 - 33869424
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  33869231 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttacttaaactaatctct 33869330  T
Q  469 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    |||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  33869331 atatataggaacactattgtacgcattcactatcttttgttaaatctagtttactctcctatgagtcactatggatatctcccacatgaataca 33869424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 5376876 - 5377000
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc-tatatataggaaca 481  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  5376876 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaaca 5376975  T
Q  482 ctattgtattcattcattatctttt 506  Q
    |||||||| ||||||| ||||||||    
T  5376976 ctattgtactcattcaatatctttt 5377000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 5378731 - 5378855
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc-tatatataggaaca 481  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  5378731 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaaca 5378830  T
Q  482 ctattgtattcattcattatctttt 506  Q
    |||||||| ||||||| ||||||||    
T  5378831 ctattgtactcattcaatatctttt 5378855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 385 - 506
Target Start/End: Complemental strand, 1088883 - 1088762
Alignment:
Q  385 atcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacacta 484  Q
    ||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  1088883 atcaactatagttagttgataagtaaattagagttagtagctttgttagaagttagttagagttagttagtcaaactaatctctatatataggaacacta 1088784  T
Q  485 ttgtattcattcattatctttt 506  Q
    ||||| |||||||| |||||||    
T  1088783 ttgtactcattcatcatctttt 1088762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 383 - 506
Target Start/End: Complemental strand, 19645532 - 19645409
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||| ||||||||||||||| |||||||| | |||||||||||||||||| |||||  ||| |||||||||||||||||||||||||||| ||||||    
T  19645532 taatcaattatagttagttgataagtaaactaaagttagtagcttggttagaaattagtcagaggtagttactcaaactaatctctatatataagaacac 19645433  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| ||||||||||||||||    
T  19645432 tattgtactcattcattatctttt 19645409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 368 - 561
Target Start/End: Original strand, 14611068 - 14611259
Alignment:
Q  368 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc 467  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||  ||||| || ||||||||||| | |||||| |||    
T  14611068 ttattagagtatgaataatcaactatggttagttgataggtaaattagagttagtagcttcgttaagagttatttagagttagttacac-aactaaactc 14611166  T
Q  468 tatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 561  Q
    ||||||||||||||||  |||||   ||||||||||||| | |||| || || | | | ||||||||| |||||| ||||||||||||||||||    
T  14611167 tatatataggaacactcgtgtatcatttcattatcttttatcaaatata-ttgattatcctatgagtctctatggttatctcccacatgaatac 14611259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 383 - 480
Target Start/End: Complemental strand, 15149277 - 15149180
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaac 480  Q
    ||||||||||||||||||||||| |||||||||  | ||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||    
T  15149277 taatcaactatagttagttgataagtaaactagggtcagtagcttggttagaagttagttagagttagttactcaaattaatttctatatataggaac 15149180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 54 - 213
Target Start/End: Complemental strand, 18367961 - 18367792
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac-----------atataattacactgcattttgt 142  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||           ||||||||||||||||||||||    
T  18367961 aagcacggacactccttggataaggcgtgtccccgtgtcagacatgtgtcgtgtctgacaccgacacgacaccgacacatataattacactgcattttgt 18367862  T
Q  143 gattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    ||||||||       |||| ||||||||||||| ||| ||| |||||| | ||||||||||||||||||||    
T  18367861 gattttctaaaaaaattagctgtgtcggcgtgt-cgtgtccatgtcgtgtccggtgtccgtgtccgtatcc 18367792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 369 - 454
Target Start/End: Original strand, 32079895 - 32079980
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttac 454  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  |||||||| |||||||||||    
T  32079895 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagaagcttggttaagagttagttagagttagttac 32079980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 34595248 - 34595098
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| |||||||| |||| ||||||||||| ||||| ||||||||||||||| ||||||||||| | ||||||||||| ||| ||||||||| |       
T  34595248 aagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaa 34595149  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtg 204  Q
        |||||||||||||||||||  | |||||||||| | |||||||||||    
T  34595148 attattagttgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtg 34595098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 411 - 489
Target Start/End: Original strand, 9415095 - 9415173
Alignment:
Q  411 actagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgta 489  Q
    |||||| ||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| |||||||||||||    
T  9415095 actagagttagtagcttggttagaagttagttagagttagttagtgaaactaatctctatatataagaacactattgta 9415173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 8776913 - 8777077
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtg-----tcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| |||| ||||||||| | ||||| ||||||||     ||||||| |||||| |||| | ||||||||||| |||||||||||||    
T  8776913 aagcacggacactcctcggattaggtgtgtctcggtgtcggacacgtgtcgtgtcgtgtccgacaccaacacttgtaattacactgaattttgtgatttt 8777012  T
Q  149 ctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
     |       ||||||||||||||||||| || |||||||||| | || |||||||||||||||||    
T  8777013 ttcaaattattagttgtgtcggcgtgtcagtgtccgtgtcgtgtccgttgtccgtgtccgtatcc 8777077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 215
Target Start/End: Original strand, 16488524 - 16488690
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc-----------tgacaccgacacatataattacactgcattttgt 142  Q
    ||||||||||| ||||||||||||| ||||||||||| | |||||||||||||||            |||||||||||||||||||||||||||||||||    
T  16488524 aagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcattttgt 16488623  T
Q  143 gattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccat 215  Q
    ||||||||       |||| ||||||||||||      ||| |||||||| |||||||||||||||| |||||    
T  16488624 gattttctaaaaaaattagctgtgtcggcgtg------tccatgtcgtttccggtgtccgtgtccgtgtccat 16488690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 9658994 - 9658857
Alignment:
Q  54 aagcacgaacactccttgga-taaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnn 152  Q
    ||||||| |||||||||||| | ||| |||| || ||||| |||||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||      
T  9658994 aagcacggacactccttggaattaggcgtgttccggtgtcagacacgtgtcgtgtctaacaccgacaaatataattacactgaattatgtgattttctta 9658895  T
Q  153 nnnnnttagttgtgtcggcgtgtccgtatccgtgtcgt 190  Q
         ||||  ||||||||||||| || ||||||||||    
T  9658894 aattattagcggtgtcggcgtgtcagtgtccgtgtcgt 9658857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 13789268 - 13789174
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||||||||||||||| |||||| || ||||| |||| |||||||||| |||| ||||  || |||||||||||||||||||||| |||||||    
T  13789268 aagcacgaacactccttgaataaggcgtatccccatgtcagacacgtgtcatgtccgacattgatacatataattacactgcattttatgatttt 13789174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 13797887 - 13797793
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||||||||||||||| |||||| || ||||| |||| |||||||||| |||| ||||  || |||||||||||||||||||||| |||||||    
T  13797887 aagcacgaacactccttgaataaggcgtatccccatgtcagacacgtgtcatgtccgacattgatacatataattacactgcattttatgatttt 13797793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 435 - 561
Target Start/End: Original strand, 14618975 - 14619099
Alignment:
Q  435 agttagttggagttagttactcaaactaatctctatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagt 534  Q
    |||||||| ||||||||||| ||| |||| |||||||||||||||||||  |||||   ||||||||||||| | ||||||| || | ||| ||||||||    
T  14618975 agttagttagagttagttacacaa-ctaaactctatatataggaacactcatgtatcatttcattatcttttatcaaatcta-ttgattctcctatgagt 14619072  T
Q  535 cactatgggtatctcccacatgaatac 561  Q
    | |||||| ||||||||||||||||||    
T  14619073 ctctatggttatctcccacatgaatac 14619099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 28152212 - 28152118
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||||||||||||| |||| |||  |||||| ||||| ||||||||||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  28152212 aagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 28152118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 369 - 442
Target Start/End: Original strand, 14620496 - 14620569
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagtt 442  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||  ||||||||    
T  14620496 tattagagtatgaataatcaactatgattagttgataggtaaactacagttagtagcttggttaagagttagtt 14620569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 220
Target Start/End: Complemental strand, 16766755 - 16766645
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    ||||||||||| | ||||||||||| ||| ||||||||| |       |||| |||||||||||||| || ||| |||||| | ||||||||||||||||    
T  16766755 gacaccgacacttgtaattacactgaattatgtgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgtgtccgt 16766656  T
Q  210 atccattcttc 220  Q
    |||||| ||||    
T  16766655 atccatgcttc 16766645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 12696435 - 12696383
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 114  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  12696435 acactccttggataaggtgtgtcccggtgtcagacacgtgtcgtgtccgacac 12696383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 383 - 506
Target Start/End: Complemental strand, 28884487 - 28884363
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    |||||| ||||||||||||||||||| ||||||| |||| ||||| |||   |||| ||| ||||  ||||||  || |||||| |||||| |||||||     
T  28884487 taatcagctatagttagttgataggttaactagagttagaagctttgtttatagttggttagagtcggttacttcaattaatctgtatataaaggaacaa 28884388  T
Q  483 t-attgtattcattcattatctttt 506  Q
    | |||||| ||||||||||||||||    
T  28884387 tcattgtactcattcattatctttt 28884363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 16833414 - 16833286
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttag 161  Q
    |||||||| ||||  |||||||||  ||||| ||| |||||||||||| |||||||||| | ||||||||||| | | ||||||||| |       ||||    
T  16833414 acactcctcggattcggtgtgtcctggtgtcggacgcgtgtcgtgtctaacaccgacacttgtaattacactgaagtatgtgattttttcaaattattag 16833315  T
Q  162 ttgtgtcggcgtgtccgtatccgtgtcgt 190  Q
    ||||||||||||||| || || |||||||    
T  16833314 ttgtgtcggcgtgtcagtgtctgtgtcgt 16833286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 32978844 - 32978923
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacact 133  Q
    ||||||| ||||||||||||| ||  ||||||| ||||| |||| |||||||||| ||||||||||| | ||||||||||    
T  32978844 aagcacggacactccttggattagacgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacact 32978923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 209
Target Start/End: Original strand, 853812 - 853959
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttag 161  Q
    |||||| |||||| ||| ||||| |  |||| ||||| |||||| || ||||||||||| | ||||| ||||  ||| ||||||||| |       ||||    
T  853812 acactcattggattaggcgtgtctctatgtcggacacatgtcgtatccgacaccgacacttgtaattgcacttaattatgtgattttttcaaattattag 853911  T
Q  162 ttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    ||||||||||||||| | ||||||||||| | |||||||||| |||||    
T  853912 ttgtgtcggcgtgtcagcatccgtgtcgtgtccggtgtccgtatccgt 853959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 33001234 - 33001328
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||| ||||||| |||||| ||| || |  | ||||| ||||||||||||||| |||||||||||||||||||||| |  ||| |||||||||    
T  33001234 aagcacaaacactctttggattaggcgtatttcggtgtcagacacgtgtcgtgtccgacaccgacacatataattacatttaattatgtgatttt 33001328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 212
Target Start/End: Complemental strand, 9027236 - 9027134
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    ||||||||||||||||||||||| | ||| ||||||| |||       ||||  ||||||||||||| || |||||||||| | ||| ||||||||||||    
T  9027236 gacaccgacacatataattacacggaattatgtgattatctcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggagtccgtgtccgt 9027137  T
Q  210 atc 212  Q
    |||    
T  9027136 atc 9027134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 7740712 - 7740660
Alignment:
Q  97 acgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttc 149  Q
    |||||||||||| ||||| ||||||||||||||||||  ||||||||||||||    
T  7740712 acgtgtcgtgtccgacactgacacatataattacactcaattttgtgattttc 7740660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 104 - 213
Target Start/End: Complemental strand, 7938180 - 7938071
Alignment:
Q  104 gtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgt 203  Q
    ||||| ||||||||||| ||||||||||||  ||| | ||||||| |       |||| |||||||||||||| || ||| |||||| | ||||||||||    
T  7938180 gtgtcggacaccgacacttataattacactaaattatatgattttttcaaattattagctgtgtcggcgtgtcagtgtccatgtcgtgtccggtgtccgt 7938081  T
Q  204 gtccgtatcc 213  Q
    ||||||||||    
T  7938080 gtccgtatcc 7938071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 13360318 - 13360413
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| |||||| | |||| ||| ||||| | ||||| ||||  ||| |||||||||||||| |||||||||||||||| ||| |||||||||||    
T  13360318 aagcacggacactcttcggattaggcgtgtctcagtgtcggacat-tgttgtgtctgacaccgaaacatataattacactgaattatgtgattttct 13360413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 7996327 - 7996419
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| | ||||||||||| ||| ||||||||||||  |||||||||||     ||||||||| ||||||||||||||| ||| | |||||||||    
T  7996327 aagcacggagactccttggattaggcgtgtccccgtgttagacacgtgtcg----cgacaccgacgcatataattacactgaattatatgattttct 7996419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 8022474 - 8022382
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| | ||||||||||| ||| ||||||||||||  |||||||||||     ||||||||| ||||||||||||||| ||| | |||||||||    
T  8022474 aagcacggagactccttggattaggcgtgtccccgtgttagacacgtgtcg----cgacaccgacgcatataattacactgaattatatgattttct 8022382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 173
Target Start/End: Original strand, 17327595 - 17327719
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc-----tgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||||||||||||||      ||||| |||||||||| |||||||  ||| |||||||||    
T  17327595 aagcacggacactcctcggattaggcgtgtccctgtgtcagacacgtgtcgtgtccgacacgacactgacacatatagttacactaaattatgtgatttt 17327694  T
Q  149 ctnnnnnnnttagttgtgtcggcgt 173  Q
    ||       ||||||||||||||||    
T  17327695 ctcaaaatcttagttgtgtcggcgt 17327719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 150
Target Start/End: Complemental strand, 19040421 - 19040370
Alignment:
Q  99 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||| ||||| ||||||||||||||||||| ||| |||||||||||    
T  19040421 gtgtcgtgtccgacacagacacatataattacactgaattatgtgattttct 19040370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 7265588 - 7265634
Alignment:
Q  104 gtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  7265588 gtgtccgacaccgacacatataattacactgaattatgtgattttct 7265634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 7378047 - 7377997
Alignment:
Q  100 tgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||| |||||||||||||||||||||| || ||| |||||||||||    
T  7378047 tgtcgtgtccgacaccgacacatataattacattgaattatgtgattttct 7377997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 200
Target Start/End: Complemental strand, 19044523 - 19044432
Alignment:
Q  109 tgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtc 200  Q
    ||||||||||||||||||| |||||| ||| |||||| ||||       ||||| ||||||||||||| || ||| |||||| |||||||||    
T  19044523 tgacaccgacacatataataacactgaattatgtgatattctcaaattattagtcgtgtcggcgtgtcagtgtccatgtcgtattcggtgtc 19044432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 557
Target Start/End: Original strand, 24544733 - 24544791
Alignment:
Q  499 tatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatga 557  Q
    |||||||| | |||||||||||||||||||||||||  ||||| ||||||||| |||||    
T  24544733 tatcttttatcaaatctagtttactctactatgagtttctatgagtatctccctcatga 24544791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 28715409 - 28715315
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| ||||| || | || ||| ||||||| |||||  |||||||||||||| ||||||||||| | ||||||||||| ||| ||| |||||    
T  28715409 aagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtcatttt 28715315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 30851674 - 30851637
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattaca 131  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  30851674 gacacgtgtcgtgtccgacaccgacacatataattaca 30851637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 5626686 - 5626763
Alignment:
Q  99 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtc 176  Q
    |||||||||| |||||||||||||||| |||||||| | |  ||||||||||       |||||||||||||||||||    
T  5626686 gtgtcgtgtccgacaccgacacatatatttacactgaactaagtgattttctaaaaaaattagttgtgtcggcgtgtc 5626763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 9025495 - 9025535
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  9025495 gacaccgacacatataattacactgaattatgtgattttct 9025535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 24645561 - 24645501
Alignment:
Q  88 gtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||| ||||||||||||||||||||||||||| | ||| || |||| ||| |||||||||    
T  24645561 gtgtcggacacgtgtcgtgtctgacaccgacacttgtaactatactgaattatgtgatttt 24645501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 7027300 - 7027262
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  7027300 gacaccgacacatataattacactgaattatgtgatttt 7027262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 8365453 - 8365519
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| | |||||| |||| ||| ||||||| ||||| ||||||||||||||| || ||||||||    
T  8365453 aagcacggagactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacac 8365519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 10339059 - 10339125
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| ||||||||  ||| ||| ||||||| ||||| |||| |||||||||| |||||||||||    
T  10339059 aagcacggacactcctccgattaggcgtgtcccagtgtcggacatgtgtcgtgtccgacaccgacac 10339125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 31385044 - 31384990
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc 108  Q
    ||||||| ||||||||||||| ||| ||||||| ||||  |||||||||||||||    
T  31385044 aagcacggacactccttggattaggcgtgtcccggtgtaggacacgtgtcgtgtc 31384990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 426568 - 426625
Alignment:
Q  163 tgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 220  Q
    |||||||||||||| || |||||||||| | |||| |||||||| |||||||| ||||    
T  426568 tgtgtcggcgtgtcagtgtccgtgtcgtgtccggtatccgtgtctgtatccatgcttc 426625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 31579212 - 31579266
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||| |||||||||| |||||||||||  |||||||||||| ||| |||||||||||    
T  31579212 gacatgtgtcgtgtccgacaccgacac--ataattacactgaattatgtgattttct 31579266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 9617492 - 9617452
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||||||||||||||| || ||| |||||||||||    
T  9617492 gacaccgacacatataattacattgaattatgtgattttct 9617452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 9629441 - 9629401
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||||||||||||||| || ||| |||||||||||    
T  9629441 gacaccgacacatataattacattgaattatgtgattttct 9629401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 26562747 - 26562707
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||| |||||||||||||||||||| ||| |||||||||||    
T  26562747 gacatcgacacatataattacactgaattatgtgattttct 26562707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 61)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 369 - 562
Target Start/End: Original strand, 3284487 - 3284680
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3284487 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctct 3284586  T
Q  469 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3284587 atatataggaacactattgtactcattcactatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatgaataca 3284680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 369 - 562
Target Start/End: Original strand, 3282786 - 3282979
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3282786 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctct 3282885  T
Q  469 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  3282886 atatataggaacactattgtactcattcactatcttttgttaaatctagtttactctcctataagtcactatgggtatctcccacatgaataca 3282979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 369 - 562
Target Start/End: Original strand, 9312014 - 9312207
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9312014 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctct 9312113  T
Q  469 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  9312114 atatataggaacactattgtactcattcattatcttttgttaaatctagtttactctcccatgagtcactatgagtatctcccacatgaataca 9312207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 369 - 562
Target Start/End: Original strand, 9310397 - 9310590
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||| |||    
T  9310397 tattagagtatgaataatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagagttagttactcaaattaatatct 9310496  T
Q  469 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  9310497 atatataggaacactattgtactcattcattatcttttgttaaatctaatttactctcctatgagtcactatgggtatctcccacatgaataca 9310590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 368 - 562
Target Start/End: Original strand, 902061 - 902254
Alignment:
Q  368 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc 467  Q
    |||||| | |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||  ||| |||    
T  902061 ttattataatatgaataatcatctatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttacacaat-taaactc 902159  T
Q  468 tatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    | ||||||||||||||  |||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  902160 tctatataggaacactcatgtatcatttcattatcttttgttaaatctagtttactctcctatgagtcactatgggtatctcccacatgaataca 902254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 17449310 - 17449433
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||  |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  17449310 taatcaactatagttagttgataagtaaactagggttagtagcttcgttagaagttagttagagttagttactcaaactaatctctatatataggaacac 17449409  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| ||||||||||||||||    
T  17449410 tattgtactcattcattatctttt 17449433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 383 - 506
Target Start/End: Complemental strand, 16808811 - 16808688
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  16808811 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatatatgaacac 16808712  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| |||||||| |||||||    
T  16808711 tattgtactcattcatcatctttt 16808688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 369 - 475
Target Start/End: Complemental strand, 37664801 - 37664695
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  37664801 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctct 37664702  T
Q  469 atatata 475  Q
    |||||||    
T  37664701 atatata 37664695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 369 - 475
Target Start/End: Complemental strand, 37674523 - 37674417
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  37674523 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctct 37674424  T
Q  469 atatata 475  Q
    |||||||    
T  37674423 atatata 37674417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 10577680 - 10577839
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| ||||||||||||||||| ||||||||||||| |||||| |||||||| | | |||||||||||||||||||||||||||||||||||||       
T  10577680 aagcacggacactccttggataaggcgtgtccccgtgtcagacacgcgtcgtgtccgcccccgacacatataattacactgcattttgtgattttctaaa 10577779  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
        |||| |||||||||||||| || |||||||||| | ||||||||||||||||||||    
T  10577780 aaaattagctgtgtcggcgtgtcggtgtccgtgtcgtgtccggtgtccgtgtccgtatcc 10577839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 369 - 475
Target Start/End: Original strand, 37702171 - 37702277
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||||||    
T  37702171 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaaattagttagagttagttattcaaactaatctct 37702270  T
Q  469 atatata 475  Q
    |||||||    
T  37702271 atatata 37702277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 369 - 442
Target Start/End: Complemental strand, 5925020 - 5924947
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagtt 442  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||    
T  5925020 tattagagtatgaataatcaactatagttagttgataggtaaattagagttagtagtttggttagaagttagtt 5924947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 62 - 220
Target Start/End: Original strand, 1486657 - 1486820
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc-----tgacaccgacacatataattacactgcattttgtgattttctnnnnnn 156  Q
    |||||||| |||| ||| ||||||| ||||| |||||||||||||||      ||||||||||| ||||||||||||| ||| ||||||||| |          
T  1486657 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacacgacaccgacacttataattacactgaattatgtgattttttcaaatt 1486756  T
Q  157 nttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 220  Q
     |||| |||||| ||||||| ||||||||||||| | |||| ||||||||||||||||| ||||    
T  1486757 attagctgtgtcagcgtgtcagtatccgtgtcgtatccggtatccgtgtccgtatccatgcttc 1486820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 5898211 - 5898305
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| |||| ||  ||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  5898211 aagcacggacactcctcggattagacgtgtcccggtgttggacacgtgtcgtgtctgacaccgacgcatataattacactgaattatgtgatttt 5898305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 42359394 - 42359553
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||||  ||| |||| ||||||||||| | ||||||||||| ||||||||||||| |       
T  42359394 aagcacggacactcctcggattaggcgtgtcccggtgtcggacacacgtcttgtccgacaccgacacttgtaattacactgaattttgtgattttttcaa 42359493  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
        |||| |||||| ||||||| || ||||||| || | |||||| |||||||||||||    
T  42359494 attattagatgtgtcagcgtgtcagtgtccgtgttgtgtacggtgttcgtgtccgtatcc 42359553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 220
Target Start/End: Original strand, 2896074 - 2896232
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttag 161  Q
    ||||| ||||||| ||||||||||| || || ||||| |||||||||||||||||||| |||||  ||||||| ||| |||||||||||       ||||    
T  2896074 acacttcttggattaggtgtgtcccggtctcggacacatgtcgtgtctgacaccgacatatatagctacactgaattatgtgattttctcaaattattag 2896173  T
Q  162 ttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 220  Q
      ||||||||||||| || ||||||| || | || |||||||| | |||||| ||||||    
T  2896174 cggtgtcggcgtgtcagtgtccgtgttgtgtccgttgtccgtgactgtatccgttcttc 2896232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 37598945 - 37598824
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| |||||||| |||| ||| |||||||  |||| ||||||||||||||| ||||||||||| ||||||||||||| | ||||||||||| |       
T  37598945 aagcacggacactcctcggattaggcgtgtcccattgtcggacacgtgtcgtgtccgacaccgacacttataattacactg-aatttgtgattttttcaa 37598847  T
Q  154 nnnnttagttgtgtcggcgtgtc 176  Q
        |||||||||||||||||||    
T  37598846 attattagttgtgtcggcgtgtc 37598824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 430 - 506
Target Start/End: Original strand, 48941646 - 48941722
Alignment:
Q  430 ttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgtattcattcattatctttt 506  Q
    ||||||||||||| ||||| |||||||||||||||||||||| |||  |||||||||||| ||||||| ||||||||    
T  48941646 ttagaagttagttagagttggttactcaaactaatctctatacatataaacactattgtactcattcagtatctttt 48941722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 25934741 - 25934675
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| ||||||||||||||||| || |||||||||| ||||||||||||||| |||||||||||    
T  25934741 aagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacaccgacac 25934675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 51410139 - 51410045
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||||| ||||||||||| ||| ||||| | ||||| || |||||||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  51410139 aagcacgaatactccttggattaggcgtgtctcggtgtcggatacgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 51410045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 12919059 - 12918967
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatt 146  Q
    ||||||||||||| || |||||||  ||||||||||||| ||||||||||||||| || ||| ||||||||||| ||| || ||| |||||||    
T  12919059 aagcacgaacacttctcggataagccgtgtccccgtgtcagacacgtgtcgtgtccgataccaacacatataatcacattgaattatgtgatt 12918967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 40181976 - 40181889
Alignment:
Q  63 cactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| |||| ||| ||||||| ||||  ||||||||| ||||| |||||||| |||||||||||||||| ||| |||||||||||    
T  40181976 cactcctcggattaggcgtgtcccggtgtaggacacgtgttgtgtccgacaccgatacatataattacactgaattatgtgattttct 40181889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 18190061 - 18190147
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||||| |||| ||||||||||| ||||| ||||||||| |||||||||| |||||| | ||||||||||| ||| ||| |||||    
T  18190061 acactcctcggattaggtgtgtcccggtgtcggacacgtgttgtgtctgacatcgacacttgtaattacactgaattatgtaatttt 18190147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 18337443 - 18337349
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| |||| |||  |||||| ||||| ||||||||| ||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  18337443 aagcacggacactcctcggatcaggcatgtcccagtgtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 18337349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 40258886 - 40258972
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||||| |||| ||| ||||||  ||||| |||| |||||||||||||||||||||| | ||||||||||| ||| |||||||||    
T  40258886 acactcctcggattaggcgtgtcctggtgtcggacaggtgtcgtgtctgacaccgacacttgtaattacactgaattatgtgatttt 40258972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 29163326 - 29163421
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttc 149  Q
    ||||||||||||| ||  ||| ||  ||||||| ||||| | ||||||||||||| |||||||||||||||||||| | || ||| ||||||||||    
T  29163326 aagcacgaacacttctctgattagccgtgtcccggtgtcaggcacgtgtcgtgtccgacaccgacacatataattaaattgaattatgtgattttc 29163421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 32461398 - 32461465
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacaca 121  Q
    ||||||| ||||| ||||||| ||| ||||||| ||||| ||||||||||||||| ||||||||||||    
T  32461398 aagcacggacacttcttggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacaccgacaca 32461465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 213
Target Start/End: Original strand, 41597423 - 41597574
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacac-tgcattttgtgattttctnnnnnnntta 160  Q
    ||||||||||||||| | || |||||||||| ||||||||||||||| ||||| |||||| | |   |||| |  |||||||||||||||       |||    
T  41597423 acactccttggataaagcgtatccccgtgtcagacacgtgtcgtgtccgacacggacaca-acaccaacacatatattttgtgattttctagaaaattta 41597521  T
Q  161 gttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    | ||||| |||||||| || |||||||||| || ||||||||| |||||||||    
T  41597522 gctgtgttggcgtgtcggtgtccgtgtcgtgtttggtgtccgtatccgtatcc 41597574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 434
Target Start/End: Original strand, 48940675 - 48940726
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttaga 434  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  48940675 taatcaactatagttagttgataagtaaactagagttagtagtttggttaga 48940726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 1815362 - 1815277
Alignment:
Q  63 cactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||||  ||| ||| ||||||| ||||| |||| |||||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  1815362 cactcctcagattaggcgtgtcccggtgtcggacatgtgtcgtgtcggacaccgacacttgtaattacactgaattatgtgatttt 1815277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 36878580 - 36878479
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtcc-----gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| |||| ||| |||||||||||||      |||| || ||||||| ||||||||||| ||||||||||||| ||| |||||||||    
T  36878580 aagcacggacactcctgggattaggcgtgtccccgtgtcgtgtcggacatgtttcgtgtcagacaccgacacctataattacactgaattatgtgatttt 36878481  T
Q  149 ct 150  Q
    ||    
T  36878480 ct 36878479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 188
Target Start/End: Original strand, 46348328 - 46348462
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| |||| ||| |||| ||| ||||| | ||||| ||||||||||||||| ||||||||||| | ||||||||||  ||| | ||||||| |       
T  46348328 aagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatatgattttttcaa 46348427  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtgtc 188  Q
        |||| |||||||||||||| || ||||||||    
T  46348428 attattagctgtgtcggcgtgtcagtgtccgtgtc 46348462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 30749946 - 30749858
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||| | |||| | || ||| ||||||  |||| ||| ||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  30749946 acactcctcgaataatgcgtatcctcgtgtcaaacacatgtggtgtccgacaccgacacatataattacactgaattatgtgattttct 30749858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 30771397 - 30771309
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||| | |||| | || ||| ||||||  |||| ||| ||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  30771397 acactcctcgaataatgcgtatcctcgtgtcaaacacatgtggtgtccgacaccgacacatataattacactgaattatgtgattttct 30771309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 22515832 - 22515964
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| |||||||| |||| ||| ||||| | ||||| || | |||||||||| ||||||||||| | ||||||||||  ||| ||||||||| |       
T  22515832 aagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaa 22515931  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtg 186  Q
        |||| |||||| |||||||||| ||||||    
T  22515932 attattagctgtgtctgcgtgtccgtgtccgtg 22515964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 9828169 - 9828103
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| |||||||| |||| ||  ||||||| ||||| ||||||||||||||||||||| |||||    
T  9828169 aagcacggacactcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacac 9828103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 25934671 - 25934608
Alignment:
Q  113 accgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtc 176  Q
    |||||||||||||||||||||| |||||||||||||||       |||| ||||||||||||||    
T  25934671 accgacacatataattacactgtattttgtgattttctagaaaatttagctgtgtcggcgtgtc 25934608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 213
Target Start/End: Original strand, 398772 - 398869
Alignment:
Q  116 gacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    ||||| ||||||||||||| ||| ||||||||| |       ||||  ||||||||||||| || |||||||||| | ||||||||| ||||||||||    
T  398772 gacacctataattacactgaattatgtgattttttcaaattattagcggtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgcgtccgtatcc 398869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 34371771 - 34371731
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  34371771 gacaccgacacatataattacactgaattatgtgattttct 34371731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 44482288 - 44482248
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  44482288 gacaccgacacatataattacactgaattatgtgattttct 44482248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 150
Target Start/End: Original strand, 1864882 - 1864921
Alignment:
Q  111 acaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||||||||||||||||| ||| |||||||||||    
T  1864882 acaccgacacatataattacactgaattatgtgattttct 1864921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 186
Target Start/End: Original strand, 12443469 - 12443537
Alignment:
Q  118 cacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtg 186  Q
    |||||| |||||||||| ||| |||||||||||       |||| ||||||||||||||||||||||||    
T  12443469 cacatacaattacactgaattatgtgattttctcaaattattagctgtgtcggcgtgtccgtatccgtg 12443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 422
Target Start/End: Original strand, 36580553 - 36580600
Alignment:
Q  375 agtatgaataatcaactatagttagttgataggtaaactagaattagt 422  Q
    ||||||||||||| ||||||| |||||||||||| ||||||| |||||    
T  36580553 agtatgaataatctactatagatagttgataggttaactagagttagt 36580600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 205
Target Start/End: Complemental strand, 40917761 - 40917714
Alignment:
Q  158 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgt 205  Q
    |||| |||||||||||||| ||||||||||||| | ||||||||||||    
T  40917761 ttagctgtgtcggcgtgtcagtatccgtgtcgtgtccggtgtccgtgt 40917714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 43492456 - 43492535
Alignment:
Q  71 ggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||| ||| |||| || ||||| |||| |||| |||||||||||||||||| |||||||||| | |||  ||||||||||    
T  43492456 ggattaggcgtgtgccggtgtcggacatgtgttgtgtctgacaccgacacacataattacaccgaattacgtgattttct 43492535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 2784620 - 2784574
Alignment:
Q  104 gtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||||||||||||||||||| |||  ||| |||||||||||    
T  2784620 gtgtctgacaccgacacatataattatactcaattatgtgattttct 2784574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 13997957 - 13997903
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||| ||||||| ||  |||||||||||||||||||||||| ||| |||||||||    
T  13997957 gacatgtgtcgtctccaacaccgacacatataattacactgaattatgtgatttt 13997903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 23636044 - 23636090
Alignment:
Q  104 gtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||||||||||||| |||||||||| ||| ||| |||||||    
T  23636044 gtgtctgacaccgacacatacaattacactgaattatgtaattttct 23636090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 38078606 - 38078700
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||||| |||||| |||| ||| ||||||  ||||   ||| |||||||||| ||||||||||| | |||||||| || ||| |||||||||    
T  38078606 aagcacgaatactcctcggattaggcgtgtcctggtgttgaacatgtgtcgtgtccgacaccgacacttgtaattacattgaattatgtgatttt 38078700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 40917874 - 40917808
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| ||| |||| |||| ||| ||||||| ||||| |||||||||||||||  ||||||||||    
T  40917874 aagcacggacagtcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacac 40917808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 47989622 - 47989556
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| |||||||| |||| ||| |||||||  |||| |||| |||||||||| |||||||||||    
T  47989622 aagcacggacactcctcggattaggcgtgtcccgatgtcagacatgtgtcgtgtccgacaccgacac 47989556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 209
Target Start/End: Original strand, 10572591 - 10572689
Alignment:
Q  111 acaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    |||||||||||| ||||||||| | ||| |||||||||||       ||||| ||||||||||||| || | | |||||| | |||||||||| |||||    
T  10572591 acaccgacacatttaattacaccgaattatgtgattttctcaaattattagtggtgtcggcgtgtcagtgttcatgtcgtgtccggtgtccgtatccgt 10572689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 14332634 - 14332683
Alignment:
Q  101 gtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||| |||||||| |||||||||||||||  ||| |||||||||||    
T  14332634 gtcgtgtccgacaccgagacatataattacactaaattatgtgattttct 14332683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 27965953 - 27966039
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||| |||| ||| ||||||| ||||| | |||| | |||||||||||| |  |||||||||||||||| ||||  |||||||||    
T  27965953 acactcctcggattaggcgtgtcccggtgtcaggcacgaggcgtgtctgacacgg--acatataattacactgaatttaatgattttct 27966039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 39130754 - 39130791
Alignment:
Q  96 cacgtgtcgtgtctgacaccgacacatataattacact 133  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  39130754 cacgtgttgtgtccgacaccgacacatataattacact 39130791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 52903314 - 52903269
Alignment:
Q  103 cgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||| ||||||||||||||||||||||||| ||| | |||||||    
T  52903314 cgtgtccgacaccgacacatataattacactgaattatatgatttt 52903269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 7918212 - 7918252
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||| ||||||||||||||||||| ||| |||||||||||    
T  7918212 gacactgacacatataattacactgaattatgtgattttct 7918252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 13436523 - 13436479
Alignment:
Q  103 cgtgtctgacaccgacacatataattacactgcattttgtgattt 147  Q
    |||||| |||||| |||||||||||||||||| ||| ||||||||    
T  13436523 cgtgtccgacaccaacacatataattacactgaattatgtgattt 13436479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 20157351 - 20157391
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||| ||||||||| ||| |||||||||||    
T  20157351 gacaccgacacatatgattacactgaattatgtgattttct 20157391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 25361944 - 25361904
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||| ||||||||||||||||||| ||| |||||||||||    
T  25361944 gacactgacacatataattacactgaattatgtgattttct 25361904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 28674874 - 28674818
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||| ||||||||||||||||| ||| ||||||||| |||| ||| ||| |||||||    
T  28674874 gacaagtgtcgtgtctgacaccaacatatataattatactgaattatgtaattttct 28674818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 170; Significance: 6e-91; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 369 - 570
Target Start/End: Original strand, 6211 - 6412
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6211 tattagagtatgaataatcaactatagttaattgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctct 6310  T
Q  469 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatacatctgtg 568  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||    
T  6311 atatataggaacactattgtactcattcactatcttttgttaaatcaagtttactctcctatgagtcactatgggtatctcccacatgaatacatctatg 6410  T
Q  569 ct 570  Q
    ||    
T  6411 ct 6412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 9e-87; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 368 - 562
Target Start/End: Complemental strand, 39787306 - 39787112
Alignment:
Q  368 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39787306 ttattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctc 39787207  T
Q  468 tatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||||||||||||||||| || ||||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  39787206 tatatataggaacactattttactcattcactgtcttttgttaaatctagtttactctcctataagtcactatgggtatctcccacatgaataca 39787112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 54 - 213
Target Start/End: Complemental strand, 6401623 - 6401453
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac-----------cgacacatataattacactgcattttgt 142  Q
    ||||||| ||||||||||||||||| || |||||||||| ||||||||||||||| |||||           |||||||||||||||||||| |||||||    
T  6401623 aagcacggacactccttggataaggcgtatccccgtgtcagacacgtgtcgtgtccgacactgacacgacaccgacacatataattacactgtattttgt 6401524  T
Q  143 gattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    ||||||||       ||||||||||||||||||| || |||||||||  | ||||||||||||| ||||||    
T  6401523 gattttctaaaaaatttagttgtgtcggcgtgtcggtgtccgtgtcgcgtccggtgtccgtgtctgtatcc 6401453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 30098983 - 30099061
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacac 132  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||    
T  30098983 aagcacgaacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtatccgacaccgacacatataattacac 30099061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 215
Target Start/End: Complemental strand, 21814386 - 21814220
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccg-----------acacatataattacactgcattttgt 142  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||||||| |||||||           ||||||||||||||||||||||||||    
T  21814386 aagcacgaacattccttggataaggcgtgtccccgtgccagacacgtgtcgtgtccgacaccgacacgacaccgacacatataattacactgcattttgt 21814287  T
Q  143 gattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccat 215  Q
    ||||||||       |||| ||||||||||||      ||| |||||||| |||||||||||||||| |||||    
T  21814286 gattttctaaaaaaattagctgtgtcggcgtg------tccatgtcgtttccggtgtccgtgtccgtgtccat 21814220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 211
Target Start/End: Original strand, 21191001 - 21191158
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| |||||||| |||| ||| ||||||| | ||| ||||||||| ||||| ||||||||||| | ||||||||||| ||| ||||||||| |       
T  21191001 aagcacggacactcctcggattaggcgtgtcccggagtcggacacgtgttgtgtccgacaccgacacttgtaattacactgaattatgtgattttttcaa 21191100  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtat 211  Q
        |||| ||||||||| |||| || |||||||||| | ||||||| ||||||||||    
T  21191101 attattagctgtgtcggcatgtcagtgtccgtgtcgtgtccggtgtcagtgtccgtat 21191158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 375 - 506
Target Start/End: Complemental strand, 25076356 - 25076224
Alignment:
Q  375 agtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatat 474  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||   |||   |||||||| |||| ||| | || |||||||||||| ||||    
T  25076356 agtatgaataatcaactatagttagttgataggttaactagaattagaagccaagtttagagttagttagagtaagtcattccaactaatctctagatat 25076257  T
Q  475 aggaac-actattgtattcattcattatctttt 506  Q
    |||||| || |||||| || ||||| |||||||    
T  25076256 aggaacaacaattgtactctttcatcatctttt 25076224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 375 - 506
Target Start/End: Complemental strand, 25134325 - 25134193
Alignment:
Q  375 agtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatat 474  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| |||   |||   |||||||| |||| ||| | || |||||||||||| ||||    
T  25134325 agtatgaataatcaactatagttagttgataggttaactagaattagaagccaagtttagagttagttagagtaagtcattccaactaatctctagatat 25134226  T
Q  475 aggaac-actattgtattcattcattatctttt 506  Q
    |||||| || |||||| || ||||| |||||||    
T  25134225 aggaacaacaattgtactctttcatcatctttt 25134193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 30502333 - 30502429
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||| ||||||||| |||  |||||| ||||| |||| |||||||||| ||||||||||||||||||||||||| |||  ||||||||||    
T  30502333 aagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttct 30502429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 30542676 - 30542772
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||| ||||||||| |||  |||||| ||||| |||| |||||||||| ||||||||||||||||||||||||| |||  ||||||||||    
T  30542676 aagcacgaacaatccttggattaggcatgtcccagtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattaagtgattttct 30542772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 21576690 - 21576784
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| ||||||||||||||| |||| |||||| | ||||||||||| ||| |||||||||    
T  21576690 aagcacggacactcctcggattaggcgtgtcccagtgtcagacacgtgtcgtgtccgacatcgacacttgtaattacactgaattatgtgatttt 21576784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 42029864 - 42029744
Alignment:
Q  56 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnn 155  Q
    ||||| |||||||| |||||||| |||||  |||| | |||| |||||||||| |||||||| ||||||||||||| || ||| |||||||||||         
T  42029864 gcacggacactcctcggataaggcgtgtctacgtgacagacatgtgtcgtgtccgacaccgatacatataattacattgaattatgtgattttctaaatt 42029765  T
Q  156 nnttagttgtgtcggcgtgtc 176  Q
      ||| |||||||||||||||    
T  42029764 ttttaattgtgtcggcgtgtc 42029744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 134
Target Start/End: Complemental strand, 26312884 - 26312803
Alignment:
Q  53 taagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactg 134  Q
    |||||||  |||||||| |||| ||||||||||  ||||| ||||||| ||||||| |||||||| ||||||||||||||||    
T  26312884 taagcacatacactcctcggattaggtgtgtcctggtgtcagacacgtatcgtgtccgacaccgatacatataattacactg 26312803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 498 - 561
Target Start/End: Original strand, 33689980 - 33690043
Alignment:
Q  498 ttatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 561  Q
    ||||||||| | ||||||| || |||||| |||||||| |||||||||||||||||||||||||    
T  33689980 ttatcttttatcaaatctaattcactctattatgagtctctatgggtatctcccacatgaatac 33690043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 43564995 - 43564901
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| ||||| || |||| ||| ||||||| | ||| ||||| ||||||||| ||||||||||| ||||||||||||  ||| |||||||||    
T  43564995 aagcacggacacttctcggattaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttataattacactaaattatgtgatttt 43564901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 18421826 - 18421882
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||| |||||||||| ||| ||||||||||||||||||||| ||| |||||||||||    
T  18421826 gacatgtgtcgtgtccgacgccgacacatataattacactggattatgtgattttct 18421882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 42893440 - 42893380
Alignment:
Q  88 gtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||| ||||||||| ||||||||||||||||| | ||||||||||| ||| |||||||||    
T  42893440 gtgtcggacacgtgttgtgtctgacaccgacacttgtaattacactggattatgtgatttt 42893380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 94 - 213
Target Start/End: Complemental strand, 6770615 - 6770498
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgtttt 193  Q
    |||| |||||||||| ||||| ||||||||  | ||||||| ||| |||||||||||       ||||||||||| | ||||| || |||||||| | ||    
T  6770615 gacatgtgtcgtgtccgacactgacacata--agtacactgaattatgtgattttcttaaattattagttgtgtcagtgtgtcagtgtccgtgtcatgtt 6770518  T
Q  194 cggtgtccgtgtccgtatcc 213  Q
    |||||||||| |||||||||    
T  6770517 cggtgtccgtatccgtatcc 6770498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 150
Target Start/End: Original strand, 28588664 - 28588715
Alignment:
Q  99 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||| ||||||||||| ||||||||||||| ||| |||||||||||    
T  28588664 gtgtcgtgtccgacaccgacacctataattacactgaattatgtgattttct 28588715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 37328845 - 37328944
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    ||||||||||||| ||||||||||| |||||||||||||         || | |||||||| || || || |||||||||| ||||||||||||||||||    
T  37328845 gacaccgacacatgtaattacactgaattttgtgatttttacaaattatttgctgtgtcggtgtatcagtgtccgtgtcgtgttcggtgtccgtgtccgt 37328944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 124
Target Start/End: Original strand, 39268543 - 39268613
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatat 124  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| ||||| |||||||||  ||||||||||||||    
T  39268543 aagcacggacactcctcggattaggcgtgtcccagtgtcggacacatgtcgtgtccaacaccgacacatat 39268613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 42469225 - 42469180
Alignment:
Q  164 gtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    |||||||||||||  |||||||||||| ||||||||||||||||||    
T  42469225 gtgtcggcgtgtcattatccgtgtcgtgttcggtgtccgtgtccgt 42469180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 3966561 - 3966521
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  3966561 gacaccgacacatataattacactgaattgtgtgattttct 3966521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 483
Target Start/End: Original strand, 6569888 - 6569932
Alignment:
Q  439 agttggagttagttactcaaactaatctctatatataggaacact 483  Q
    |||| |||||||||| || ||||||||||||||||||||||||||    
T  6569888 agttagagttagttagtccaactaatctctatatataggaacact 6569932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 21194068 - 21194164
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| |||||||| |||| ||| ||| ||| ||||| |||| ||||||||||  ||||| | || ||||||||||||| ||  |||||||||||    
T  21194068 aagcacggacactcctcggattaggcgtgccccggtgtctgacatgtgtcgtgtccaacaccaatacctataattacactgaatgatgtgattttct 21194164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 21522873 - 21522809
Alignment:
Q  56 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||| |||||| |||||| ||| ||||||| ||| | ||||||||||||||| |||||||||||    
T  21522873 gcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacac 21522809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 21533439 - 21533375
Alignment:
Q  56 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||| |||||| |||||| ||| ||||||| ||| | ||||||||||||||| |||||||||||    
T  21533439 gcacggacactctttggattaggcgtgtcccggtgccggacacgtgtcgtgtccgacaccgacac 21533375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 21542153 - 21542089
Alignment:
Q  56 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||| ||| |||||||||  || ||||||| ||||| ||||||||||||||| |||||||||||    
T  21542153 gcacggacattccttggattcggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacac 21542089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 27932349 - 27932253
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||| ||||||||| | || ||| ||||||  ||||||||||||||||||||| |||||| | |  | ||||||||||| ||| ||| |||||||    
T  27932349 aagcacaaacactcctcgaattaggcgtgtcctggtgtccgacacgtgtcgtgtccgacaccaagatttgtaattacactgaattatgtaattttct 27932253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 15382487 - 15382432
Alignment:
Q  158 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    |||| ||||||||||||||  | |||||||||| | ||||||||||||||||||||    
T  15382487 ttagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatcc 15382432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 21522760 - 21522705
Alignment:
Q  158 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    |||| |||||||||||||| || |||||||||| | ||||| ||||||||||||||    
T  21522760 ttagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatcc 21522705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 21533326 - 21533271
Alignment:
Q  158 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    |||| |||||||||||||| || |||||||||| | ||||| ||||||||||||||    
T  21533326 ttagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgaccgtgtccgtatcc 21533271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 41995481 - 41995426
Alignment:
Q  158 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    ||||||||||||||||||| || || ||||||| | | ||||||||||||||||||    
T  41995481 ttagttgtgtcggcgtgtcagtgtctgtgtcgtatccagtgtccgtgtccgtatcc 41995426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 81 - 131
Target Start/End: Original strand, 23012380 - 23012430
Alignment:
Q  81 tgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattaca 131  Q
    |||||| ||||| |||| ||||||||||  |||||||||||||||||||||    
T  23012380 tgtcccggtgtcagacatgtgtcgtgtccaacaccgacacatataattaca 23012430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 15884057 - 15884008
Alignment:
Q  99 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  15884057 gtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 15884008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 32630688 - 32630757
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattaca 131  Q
    |||||||| | || ||||||||| |  |||| |||||||||||| || ||||| ||||||||||||||||    
T  32630688 acactcctcgaattaggtgtgtctcaatgtcggacacgtgtcgtatccgacactgacacatataattaca 32630757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 39758327 - 39758290
Alignment:
Q  113 accgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  39758327 accgacacatataattacactgaattatgtgattttct 39758290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 6471890 - 6471930
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||| |||||||||||||||||| ||| |||||||||||    
T  6471890 gacacccacacatataattacactgaattatgtgattttct 6471930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 17123161 - 17123066
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||| || |||||||  ||||||||| ||||||||  |||  ||| |||||||||||    
T  17123161 aagcacggacactcctcggattaggcgtgtccc-gtgtcggacatgtttcgtgtccaacaccgacatatataattgtacttgattatgtgattttct 17123066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 30098451 - 30098391
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 114  Q
    ||||||| ||| |||| |||| ||||||||||  ||||| ||||||||||||||| |||||    
T  30098451 aagcacggacattcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacac 30098391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 41091258 - 41091298
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||| |||||||||||||||||||| ||| |||||||||||    
T  41091258 gacatcgacacatataattacactgaattatgtgattttct 41091298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 133; Significance: 7e-69; HSPs: 53)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 368 - 560
Target Start/End: Original strand, 23985758 - 23985949
Alignment:
Q  368 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc 467  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  23985758 ttattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttagttagagttagttattcaaactaatctc 23985857  T
Q  468 tatatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaata 560  Q
    |||||||||||||||||||||| |||||||  ||||||| | ||||||| || | ||| ||||||||| |||||| |||||||||||||||||    
T  23985858 tatatataggaacactattgtactcattcaccatcttttatcaaatcta-ttgattctcctatgagtctctatggttatctcccacatgaata 23985949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 369 - 561
Target Start/End: Complemental strand, 3529393 - 3529202
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3529393 tattagagtatgaataatcaactgtagttagttgataggtaaactaaagttagtagcttggttagaagttagttagagttagttactcaaactaatctct 3529294  T
Q  469 atatataggaacactattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 561  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||||| || | ||| ||||||||| |||||| ||| | ||||||||||||    
T  3529293 atatataggaacactattgtactcattcattatcttttatcaaatcta-ttgattctcctatgagtctctatggttattttccacatgaatac 3529202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 7040360 - 7040483
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  7040360 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 7040459  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| ||||||||||||||||    
T  7040460 tattgtactcattcattatctttt 7040483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 383 - 506
Target Start/End: Complemental strand, 23564907 - 23564784
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  23564907 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 23564808  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| ||||||||||||||||    
T  23564807 tattgtactcattcattatctttt 23564784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 383 - 506
Target Start/End: Complemental strand, 23566581 - 23566458
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  23566581 taatcaactatagttagttgataagtaaactagacttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 23566482  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| ||||||||||||||||    
T  23566481 tattgtactcattcattatctttt 23566458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 52520600 - 52520723
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52520600 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 52520699  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| |||||||| |||||||    
T  52520700 tattgtactcattcatcatctttt 52520723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 18656107 - 18656230
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  18656107 taatcaactatagttagttgatagctaaactagagttagtagcttagttagaagttagttagagttagttactcaaactaatctctatatataggaaaac 18656206  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| |||||||| |||||||    
T  18656207 tattgtactcattcatcatctttt 18656230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 52518758 - 52518881
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  52518758 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctctatatataggaacac 52518857  T
Q  483 tattgtattcattcattatctttt 506  Q
    | ||||| ||| |||| |||||||    
T  52518858 tgttgtactcaatcatcatctttt 52518881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 369 - 483
Target Start/End: Complemental strand, 52545347 - 52545234
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| | |||||| ||||    
T  52545347 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtagcttggttagaagttggttagagttagttacac-aactaaactct 52545249  T
Q  469 atatataggaacact 483  Q
    |||||||||||||||    
T  52545248 atatataggaacact 52545234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 410 - 506
Target Start/End: Original strand, 54296454 - 54296550
Alignment:
Q  410 aactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgtattcattcattatctttt 506  Q
    ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  54296454 aactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatgatctttt 54296550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 369 - 561
Target Start/End: Original strand, 24807409 - 24807600
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctct 468  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||  ||||||   ||||||||||| | ||||||  |||    
T  24807409 tattagagtatgaataatcaactatagttagttgataggtaaattagagttagaagcttggttaagagttaggaagagttagttacac-aactaaaatct 24807507  T
Q  469 atatataggaacactattgtattcattc-attatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 561  Q
    |||||||||||||||  |||||   ||| || ||||||| | ||||||| || | ||| ||||||||| |||||| ||||||||||||||||||    
T  24807508 atatataggaacactcatgtatcatttcaatcatcttttatcaaatcta-ttgattctcctatgagtctctatggatatctcccacatgaatac 24807600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 5414106 - 5414264
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac-----------atataattacactgcattttgt 142  Q
    ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||           ||||||||||||||||||||||    
T  5414106 aagcacggacactccttggataaggtgtgtccctgtgtcagacacgtgtcgtgtccgacactgacacgacaccgatacatataattacactgcattttgt 5414205  T
Q  143 gattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtcc 201  Q
    ||||||||       |||| ||||||||||||||||| |||||||||| | ||||||||    
T  5414206 gattttctaaaaaaattagctgtgtcggcgtgtccgtgtccgtgtcgtgtccggtgtcc 5414264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 23292931 - 23293089
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| ||||||||||||||| ||||||||||| | |||||| |||| ||| ||||||||| |       
T  23292931 aagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattatactgaattatgtgattttttcaa 23293030  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatc 212  Q
        |||| ||||||||||||||  | |||||||||| | |||||||||||||||||||    
T  23293031 attattagctgtgtcggcgtgtcattgtccgtgtcgtgtccggtgtccgtgtccgtatc 23293089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 383 - 475
Target Start/End: Complemental strand, 3274672 - 3274580
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatata 475  Q
    |||||||||||| ||||||||||||||||| ||| ||||| ||||| ||||||||||||| |||||| ||||||||| |||| ||||||||||    
T  3274672 taatcaactataattagttgataggtaaacaagagttagtggcttgattagaagttagttagagttaattactcaaattaatttctatatata 3274580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 423 - 562
Target Start/End: Original strand, 51295202 - 51295341
Alignment:
Q  423 agcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgtattcattc-attatcttttgttaaatctagttta 521  Q
    ||||||||||  |||||||| ||||||||||| ||| |||| |  ||||||||||||||||| || ||   ||| | || ||||| | ||||||||||||    
T  51295202 agcttggttaagagttagttagagttagttacacaa-ctaaacattatatataggaacactaatgcatcatttctactaccttttatcaaatctagttta 51295300  T
Q  522 ctctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  51295301 ctctattatgagtcactatggatatctcccacatgaataca 51295341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 500 - 562
Target Start/End: Complemental strand, 5653288 - 5653226
Alignment:
Q  500 atcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaataca 562  Q
    ||||||| | |||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  5653288 atcttttatcaaatctagtttactctcctatgagtcactgtgggtatctcccacatgaataca 5653226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 49431132 - 49431046
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||||| |||||||| ||||||| ||||  ||||||||||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  49431132 acactcctcggataaggcgtgtcccggtgttggacacgtgtcgtgtccgacaccgacacttttaattacactgaattatgtgatttt 49431046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 12895219 - 12895377
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    |||||||||||||||| |||| ||| |||||||  |||| || || ||||||||| ||||||||||| |||||||||||   ||| ||||||||| |       
T  12895219 aagcacgaacactcctcggattaggcgtgtcccgatgtcggatacatgtcgtgtccgacaccgacacttataattacacaaaattatgtgattttttcaa 12895318  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatc 212  Q
        ||| |||||||||||||||  | | |||||||| | |||||||||| ||||||||    
T  12895319 attattatttgtgtcggcgtgtcattgttcgtgtcgtatccggtgtccgtatccgtatc 12895377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 369 - 433
Target Start/End: Complemental strand, 18395880 - 18395816
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttag 433  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||    
T  18395880 tattatagtatgaataatcaactatagttagttgataggtaaactatagttaataggttggttag 18395816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 36635444 - 36635272
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac-----cga-cacatataattacactgcattttgtgattt 147  Q
    ||||||| |||||| | |||| ||| ||||||| ||||| ||| |||||||||||||||||     ||| ||||||||||||||||| ||| ||||||||    
T  36635444 aagcacggacactcttcggattaggcgtgtcccggtgtctgacgcgtgtcgtgtctgacactcacacgaacacatataattacactgaattatgtgattt 36635345  T
Q  148 tctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 220  Q
    |||       ||||| |||| |||||||| || |||| ||||| | ||||||| |||||| ||||||| ||||    
T  36635344 tctcaaattattagtggtgttggcgtgtcagtgtccgagtcgtgtccggtgtctgtgtccttatccatgcttc 36635272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 30982812 - 30982878
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| |||||| |||||| ||| ||||||| ||||| |||||||||||||||||||||||||||    
T  30982812 aagcacggacactctttggattaggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacac 30982878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 35157970 - 35158089
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgtttt 193  Q
    |||| |||||||||| ||||||||||| ||||||||||||  ||| |||||||||         ||||||| ||||||||||| || ||||||| || |     
T  35157970 gacatgtgtcgtgtcagacaccgacacttataattacactaaattatgtgatttttccaaattattagttgcgtcggcgtgtcagtgtccgtgttgtgtc 35158069  T
Q  194 cggtgtccgtgtccgtatcc 213  Q
    ||||||||||||||||||||    
T  35158070 cggtgtccgtgtccgtatcc 35158089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 416
Target Start/End: Original strand, 18320063 - 18320110
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactaga 416  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  18320063 tattacagtatgaataatcaactatagttaattgataggtaaactaga 18320110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 416
Target Start/End: Complemental strand, 18398620 - 18398573
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactaga 416  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||    
T  18398620 tattacagtatgaataatcaactatagttaattgataggtaaactaga 18398573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 76 - 150
Target Start/End: Complemental strand, 9996932 - 9996858
Alignment:
Q  76 aggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||| || ||||| |||||||||  ||||||||||||| ||||||||||| |||| ||| |||||||||||    
T  9996932 aggtgtgttccagtgtcggacacgtgttatgtctgacaccgagacatataattatactgaattatgtgattttct 9996858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 19482793 - 19482739
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc 108  Q
    |||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||    
T  19482793 aagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgtgtcgtgtc 19482739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 34306749 - 34306843
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||||||| ||||  ||| ||| ||||| | ||||| ||||||||||||||| ||||||||||| | |||||||||| |||| | |||||||    
T  34306749 aagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactacattatctgatttt 34306843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 54580008 - 54580062
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||||||||||| ||||||||||| ||||||||||||| ||| |||||||||    
T  54580008 gacacgtgtcgtgtccgacaccgacacttataattacactgaattatgtgatttt 54580062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 19097859 - 19097935
Alignment:
Q  74 taaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||| ||||||||||||| |||||||||| |||  |||||||||| ||||||||| |||| |||  ||||||||||    
T  19097859 taaggcgtgtccccgtgtcagacacgtgtcatgttcgacaccgacaaatataattatactgaattacgtgattttct 19097935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 35161150 - 35161054
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| |||||  | |||| |||||||| || ||||| ||||||||||||||| ||| | || || ||||||||||||| ||| |||||||||||    
T  35161150 aagcacggacacttttcggattaggtgtgttccggtgtcggacacgtgtcgtgtccgactctgatacttataattacactgaattatgtgattttct 35161054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 848073 - 848015
Alignment:
Q  57 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacacc 115  Q
    |||| ||||||||||||| ||||||||||| |||| |||||||| ||||||| ||||||    
T  848073 cacggacactccttggattaggtgtgtcccggtgttcgacacgtttcgtgtccgacacc 848015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 8402721 - 8402783
Alignment:
Q  88 gtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||| |||| |||||||||||||||| || |||||||||||||||| ||| | |||||||||    
T  8402721 gtgtcggacaagtgtcgtgtctgacactgagacatataattacactgaattatatgattttct 8402783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 8423689 - 8423759
Alignment:
Q  80 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| ||||| ||||  ||||||||| ||||||||||  ||||||||||||| ||| |||||||||||    
T  8423689 gtgtcccggtgtcggacagctgtcgtgtccgacaccgacatttataattacactgaattatgtgattttct 8423759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 12324034 - 12323968
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| |||||||| ||||||||||||| |||||| |  ||||||||| |||| |||||||||||    
T  12324034 aagcacggacactcctcggataaggtgtgttcccgtgccacacacgtgtcatgtccgacaccgacac 12323968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 12797283 - 12797377
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||||||| |||| |||| ||   |||||| ||||| |||| || ||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  12797283 aagcacgaacattcctcggattagacttgtcccggtgtcagacatgtatcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 12797377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 140
Target Start/End: Original strand, 20950420 - 20950458
Alignment:
Q  102 tcgtgtctgacaccgacacatataattacactgcatttt 140  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  20950420 tcgtgtctgacaccgacacatataattacactgaatttt 20950458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 22234824 - 22234890
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||||||||| || |||| || |||||||  ||||| ||||||||||||||| |||||||||||    
T  22234824 aagcacgaacacttctcggattagctgtgtcctggtgtcggacacgtgtcgtgtcagacaccgacac 22234890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 28964201 - 28964287
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||||| |||| ||| ||||||| ||||| || | |||||||||| ||||| ||||| | ||||||||||| ||| |||||||||    
T  28964201 acactcctcggattaggcgtgtcccagtgtcggatatgtgtcgtgtccgacacagacacttgtaattacactgaattatgtgatttt 28964287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 119
Target Start/End: Original strand, 24613635 - 24613700
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgaca 119  Q
    ||||||| |||||||| |||| ||  ||||||  ||||| ||||||||||||||||||||||||||    
T  24613635 aagcacggacactcctaggattagacgtgtcctggtgtcagacacgtgtcgtgtctgacaccgaca 24613700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 40179626 - 40179675
Alignment:
Q  99 gtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||||||| ||||||||| ||||||||||||||| ||| |||||||||    
T  40179626 gtgtcgtgtccgacaccgacgcatataattacactgaattatgtgatttt 40179675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 3947706 - 3947766
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 114  Q
    ||||||| |||||||| |||| ||||||||||  ||||| ||||||||||||||| |||||    
T  3947706 aagcacggacactcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgacac 3947766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 29205532 - 29205464
Alignment:
Q  80 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| ||||| |||| ||||||||||  |||||||||| | ||||||||||| ||| |||||||||    
T  29205532 gtgtcccggtgtcggacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtgatttt 29205464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 2361920 - 2361999
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacact 133  Q
    ||||||| |||||| |  ||| ||||||||| | ||||| |||||| |||||||| ||||||||||| | ||||||||||    
T  2361920 aagcacggacactcgtcagattaggtgtgtctcggtgtcagacacgagtcgtgtccgacaccgacacttttaattacact 2361999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 561
Target Start/End: Complemental strand, 18395776 - 18395698
Alignment:
Q  482 ctattgtattcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 561  Q
    |||||||| ||||||| |||||||| | | ||||| || ||| |||||||||||  |||| |||||||||||||||||||    
T  18395776 ctattgtactcattcactatcttttatcatatcta-ttcactatactatgagtctatatgagtatctcccacatgaatac 18395698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 13783339 - 13783236
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    ||||||| ||||||||||||||||| |||||||||| ||||       ||||  ||||||| ||||| || |||||||| |||  | |||||||||| ||    
T  13783339 gacaccggcacatataattacactgaattttgtgatcttctcaaataattagcggtgtcggtgtgtcagtgtccgtgtcatttgagatgtccgtgtctgt 13783240  T
Q  210 atcc 213  Q
    ||||    
T  13783239 atcc 13783236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 29205582 - 29205528
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc 108  Q
    |||||||||||||||| |||| ||| ||||||| ||||| |||| ||||||||||    
T  29205582 aagcacgaacactcctcggattaggcgtgtcccagtgtcggacatgtgtcgtgtc 29205528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 36509077 - 36509131
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||||||| ||| ||| ||||||||||||||||||||  ||| |||||||||    
T  36509077 gacacgtgtcgcgtccgacgccgacacatataattacacttgattatgtgatttt 36509131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 44362760 - 44362714
Alignment:
Q  74 taaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    |||||||||||||  ||||||| ||||||||||||||||||| ||||    
T  44362760 taaggtgtgtcccgatgtccgatacgtgtcgtgtctgacaccaacac 44362714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 715550 - 715646
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtct--gacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||| |||||||||    |||||| |||| | ||||||||||| ||| |||||||||    
T  715550 aagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacactgaattatgtgatttt 715646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 752876 - 752972
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtct--gacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||| |||||||||    |||||| |||| | ||||||||||| ||| |||||||||    
T  752876 aagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacactgaattatgtgatttt 752972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 5775358 - 5775399
Alignment:
Q  109 tgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||||||||||||||||||  ||| |||||||||||    
T  5775358 tgacaccgacacatataattacacttaattatgtgattttct 5775399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 30103310 - 30103397
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||| |||| || |||||||   |||| ||||  |||||||| |||||||||||||||| ||||||||  ||| |||||||||||    
T  30103310 acactcctcggattagatgtgtcctgatgtcagacatatgtcgtgtttgacaccgacacatatgattacact-aattatgtgattttct 30103397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 40613504 - 40613468
Alignment:
Q  114 ccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||||||||| ||| |||||||||||    
T  40613504 ccgacacatataattacactgaattatgtgattttct 40613468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 360 - 506
Target Start/End: Original strand, 58762 - 58908
Alignment:
Q  360 catgatttttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaa 459  Q
    |||||||| ||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  58762 catgatttgtattagaatatgaataatcaactatagttagttagtaggtaaactagagttagtagcttggttagaagttagttagagttagttactcaaa 58861  T
Q  460 ctaatctctatatataggaacactattgtattcattcattatctttt 506  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||    
T  58862 ctaatctctatatataggaacactattgtactcattcatcatctttt 58908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 44)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 30224229 - 30224352
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  30224229 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 30224328  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| ||||||||||||||||    
T  30224329 tattgtactcattcattatctttt 30224352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 5567425 - 5567548
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    |||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5567425 taatcaactatagttagttgatagctaaactagagttagtagcttagttagaagttagttggagttagttactcaaactaatctctatatataggaaaac 5567524  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| |||||||| |||||||    
T  5567525 tattgtactcattcatcatctttt 5567548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 383 - 506
Target Start/End: Complemental strand, 3375655 - 3375532
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  3375655 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaactc 3375556  T
Q  483 tattgtattcattcattatctttt 506  Q
    |||||||  |||||||||||||||    
T  3375555 tattgtacccattcattatctttt 3375532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 6428739 - 6428862
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    |||||||||||| |||||||||| |||||||||| |||||| ||| |||| ||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  6428739 taatcaactataattagttgataagtaaactagagttagtaccttagttaaaagttagttagaggtagttactcaaactaatctctatatataggaacac 6428838  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| |||||||| |||||||    
T  6428839 tattgtaatcattcatcatctttt 6428862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 25249002 - 25249128
Alignment:
Q  383 taatcaactatagttagttgatag---gtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaa 479  Q
    |||||||||||||||| ||||||    |||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||    
T  25249002 taatcaactatagttaattgataataagtaaactagagttagtagcttggttagaagttagttaaaggtagttactcaaactaatctctatatataggaa 25249101  T
Q  480 cactattgtattcattcattatctttt 506  Q
    |||||||||| |||||||| |||||||    
T  25249102 cactattgtactcattcatgatctttt 25249128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 383 - 498
Target Start/End: Complemental strand, 3379346 - 3379231
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    |||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||||||||  ||||| ||    
T  3379346 taatcaactatagttagttgatagttaaactagagttagtagtttagttagaagttagttagagttagttactcaaactaatctctatattaaggaaaac 3379247  T
Q  483 tattgtattcattcat 498  Q
    ||||||| ||||||||    
T  3379246 tattgtactcattcat 3379231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 383 - 506
Target Start/End: Complemental strand, 31032231 - 31032112
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||     
T  31032231 taatcaactatagttagttgataagtaaactagggttagtagcttggttagaagtta----gagttagttactcaaactaatctctatatataggaacat 31032136  T
Q  483 tattgtattcattcattatctttt 506  Q
    || |  | |||||||| |||||||    
T  31032135 tactacactcattcatgatctttt 31032112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 43737756 - 43737917
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| ||||||||||||||||| || |||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||        
T  43737756 aagcacggacactccttggataaggcgtatccccgtgtcagacacctgtcgtgtccgacaccgacacatataattacactgtattttgtgattttcaaga 43737855  T
Q  154 nnnnttagttgtgtcggc--gtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
        |||| |||| ||||  ||||| || |||||||||| | ||||||||||||| ||||||    
T  43737856 aaatttagctgtgccggcgtgtgtcggtgtccgtgtcgtgtccggtgtccgtgtctgtatcc 43737917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 369 - 453
Target Start/End: Original strand, 14935562 - 14935646
Alignment:
Q  369 tattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagtta 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| || |||||||    
T  14935562 tattagagtatgaataatcaactatagttagttgataggtaaactagagttagtaacttggttagaagttagttagaattagtta 14935646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 3951481 - 3951575
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| | ||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3951481 aagcacggaaactccttggattaggcgtgttcccgtgtcagacacgtgtcgtgtctgacaccgacacatataagtacactgcattttgtgatttt 3951575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 412 - 506
Target Start/End: Complemental strand, 36536035 - 36535941
Alignment:
Q  412 ctagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgtattcattcattatctttt 506  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||| ||||| |||||||| |||||||    
T  36536035 ctagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatatagcaatactgttgtactcattcatcatctttt 36535941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 34450966 - 34451032
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  34450966 aagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacac 34451032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 926733 - 926892
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| |||||||| |||||| |  |||||| ||||| ||||||||||| ||| ||||||||||| ||||||||||||| |   || ||||||||       
T  926733 aagcacggacactcctcggataaagcatgtcccggtgtcggacacgtgtcgcgtccgacaccgacacttataattacactgaacaatgagattttctcaa 926832  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
        ||||  |||| |||||||| || |||||||||| | |||||||||||| |||||||    
T  926833 attattaggagtgttggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtatcc 926892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 3025665 - 3025569
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| |||||||| |||| ||  ||||| | ||||| ||||||||||||||| ||||| ||||| ||||||||||||| ||| |||||||||||    
T  3025665 aagcacggacactcctcggattagccgtgtcacagtgtcagacacgtgtcgtgtccgacactgacacctataattacactgaattatgtgattttct 3025569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 150
Target Start/End: Original strand, 20679348 - 20679436
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||| || ||||| ||||||| ||||| ||||||||| | ||||||||||||||| ||||||||||||| | | |||||||||||    
T  20679348 acactcctcggttaaggcgtgtcccggtgtcggacacgtgttgcgtctgacaccgacacttataattacactgaactatgtgattttct 20679436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 14134810 - 14134717
Alignment:
Q  57 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||| |||||||| | || ||| ||||||  ||| | |||||||||||||| ||||||||||| |||||||||||||| ||| |||||||||||    
T  14134810 cacggacactcctcgaattaggcgtgtcctggtgacggacacgtgtcgtgtttgacaccgacatatataattacactgaattatgtgattttct 14134717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 62 - 188
Target Start/End: Original strand, 36450707 - 36450833
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttag 161  Q
    |||||||| |||| ||| ||||||  ||||| |||||| |||||||| |||||| |||| | ||||||||||| ||| ||||||||| |       ||||    
T  36450707 acactcctcggattaggcgtgtcctggtgtcggacacgcgtcgtgtccgacacctacacttgtaattacactgaattctgtgattttttcaaattattag 36450806  T
Q  162 ttgtgtcggcgtgtccgtatccgtgtc 188  Q
    ||||||||||||||| || ||||||||    
T  36450807 ttgtgtcggcgtgtcagtgtccgtgtc 36450833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 150
Target Start/End: Original strand, 33405330 - 33405425
Alignment:
Q  55 agcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||| |||||| |||||| ||  ||||||  ||||| |||| |||||||||| ||||||||||||||||||||||||  ||| |||| ||||||    
T  33405330 agcacggacactcattggattagccgtgtccaggtgtcagacatgtgtcgtgtccgacaccgacacatataattacactaaattatgtgtttttct 33405425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 149
Target Start/End: Original strand, 34451038 - 34451077
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttc 149  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34451038 gacaccgacacatataattacactgcattttgtgattttc 34451077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 29510238 - 29510304
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| |||||||| |||| ||||||||||| ||||| |||||| |||||||| |||||||||||    
T  29510238 aagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacac 29510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 31557102 - 31557016
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||| |||||||| ||| ||||||  ||||| |||| ||||||||||||||||||| || | ||||||||||| ||| |||||||||    
T  31557102 acacaccttggattaggcgtgtcctggtgtcggacatgtgtcgtgtctgacaccgaaacttgtaattacactgaattatgtgatttt 31557016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 220
Target Start/End: Original strand, 2572057 - 2572167
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    ||||||||||| | ||||||||||  ||| ||||||||| |       |||| ||||||| |||||| ||||||||||||| | | ||||||||||||||    
T  2572057 gacaccgacacttgtaattacactaaattatgtgattttttcaaattattaggtgtgtcgacgtgtcggtatccgtgtcgtgtccagtgtccgtgtccgt 2572156  T
Q  210 atccattcttc 220  Q
    |||||| ||||    
T  2572157 atccatgcttc 2572167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 150
Target Start/End: Complemental strand, 40332302 - 40332209
Alignment:
Q  57 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||| |||||||| |||| ||| | ||||| ||||  |||||||||||||||  |||||||||| | ||||||||||| ||| |||||||||||    
T  40332302 cacggacactcctcggattaggcgcgtcccggtgtgggacacgtgtcgtgtcccacaccgacacttgtaattacactgaattatgtgattttct 40332209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 134
Target Start/End: Complemental strand, 8293931 - 8293859
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactg 134  Q
    |||||||| |||| ||||||||||  ||||| || | ||||| ||| ||||||||||||||||||||||||||    
T  8293931 acactcctcggattaggtgtgtccaggtgtcagatatgtgtcatgtttgacaccgacacatataattacactg 8293859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 4786324 - 4786379
Alignment:
Q  95 acacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||| |||||| || ||||||||||||||||||||||||| ||| |||||||||||    
T  4786324 acacatgtcgtatccgacaccgacacatataattacactgaattatgtgattttct 4786379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 24858014 - 24857957
Alignment:
Q  163 tgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 220  Q
    ||||||||||||||| | |||||||||| | |||||| ||||||||||||| ||||||    
T  24858014 tgtgtcggcgtgtccatgtccgtgtcgtgtccggtgttcgtgtccgtatccgttcttc 24857957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 26902109 - 26902216
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc-----------tgacaccgacacatataattacactgcattttgt 142  Q
    ||||||| ||||||||  ||||||| ||||||||||| | |||||||||||||||            ||||||||||||||||||||||||| ||| |||    
T  26902109 aagcacggacactcctcagataaggcgtgtccccgtgccagacacgtgtcgtgtccgacactcatacgacaccgacacatataattacactgaattatgt 26902208  T
Q  143 gattttct 150  Q
    ||||||||    
T  26902209 gattttct 26902216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 102 - 188
Target Start/End: Original strand, 31236570 - 31236656
Alignment:
Q  102 tcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtc 188  Q
    ||||||| | |||||||||||||||||||| || ||| |||||||||||       ||||  |||||||||||||||||||| ||||    
T  31236570 tcgtgtccgtcaccgacacatataattacattgaattatgtgattttctcaaattattagcagtgtcggcgtgtccgtatccttgtc 31236656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 9414860 - 9414912
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatt 146  Q
    |||||||||||||||||||||| |||| ||||||| ||||| ||| |||||||    
T  9414860 gacacgtgtcgtgtctgacaccaacacttataattgcactgaattatgtgatt 9414912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 5813706 - 5813627
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacact 133  Q
    ||||||| ||||||||   || ||| ||||||| ||||| ||||||||||||||| ||||||||||| | || |||||||    
T  5813706 aagcacggacactcctccaattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccgacacttgtatttacact 5813627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 22651986 - 22651931
Alignment:
Q  158 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    |||| |||||||||||||| || |||||||||| | ||||||| ||||||||||||    
T  22651986 ttagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtcagtgtccgtatcc 22651931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 126295 - 126369
Alignment:
Q  57 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattaca 131  Q
    |||| |||||||| |||| ||  ||||||| || |  ||||||||||||||| ||||| ||||||||||||||||    
T  126295 cacggacactcctcggattagccgtgtcccggtattggacacgtgtcgtgtccgacactgacacatataattaca 126369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 110 - 148
Target Start/End: Original strand, 11927087 - 11927125
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||||||||||||||||||||| ||| |||||||||    
T  11927087 gacaccgacacatataattacactgaattatgtgatttt 11927125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 150
Target Start/End: Original strand, 13844591 - 13844637
Alignment:
Q  104 gtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||| ||||||||||||||||||||||||  ||| |||||||||||    
T  13844591 gtgtccgacaccgacacatataattacactcaattatgtgattttct 13844637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 22652101 - 22652035
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| |||||||| |||| ||  ||||||| ||||| ||||| ||||||||| |||||||||||    
T  22652101 aagcacggacactcctcggattagacgtgtcccggtgtcggacacatgtcgtgtccgacaccgacac 22652035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 34897149 - 34897103
Alignment:
Q  104 gtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||| |||| |||||||||||||||||||| ||| |||||||||||    
T  34897149 gtgtccgacatcgacacatataattacactgaattatgtgattttct 34897103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 8847314 - 8847277
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattt 147  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  8847314 gacaccgacacatataattacactgaattatgtgattt 8847277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 12606825 - 12606870
Alignment:
Q  105 tgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||||||||||||||| || ||| | |||||||||    
T  12606825 tgtctgacaccgacacatataattacattgaattatatgattttct 12606870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 37283797 - 37283851
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||||||||  ||||||||||  |||||||||||| ||| |||||||||||    
T  37283797 gacacgtgtcgtgtcccacaccgacac--ataattacactgaattatgtgattttct 37283851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 44462166 - 44462215
Alignment:
Q  80 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataatta 129  Q
    ||||||| ||||| |||| || ||||||||||||||||||||||| ||||    
T  44462166 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgatta 44462215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 44469699 - 44469748
Alignment:
Q  80 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataatta 129  Q
    ||||||| ||||| |||| || ||||||||||||||||||||||| ||||    
T  44469699 gtgtcccggtgtcggacatgtatcgtgtctgacaccgacacatatgatta 44469748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 416
Target Start/End: Original strand, 4676048 - 4676083
Alignment:
Q  380 gaataatcaactatagttagttgataggtaaactaga 416  Q
    ||||||||||||||||||||||||| |||||||||||    
T  4676048 gaataatcaactatagttagttgat-ggtaaactaga 4676083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 210
Target Start/End: Original strand, 24196646 - 24196698
Alignment:
Q  158 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgta 210  Q
    ||||||||||||||||||| || ||||| |||| ||||||||| || ||||||    
T  24196646 ttagttgtgtcggcgtgtcggtgtccgtatcgtattcggtgtctgtatccgta 24196698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 31580072 - 31580168
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||| |||||| ||| |||| ||||||||  | |||||  ||| |||||| ||| |||| |||||| ||||||||||||  ||| |||||||||||    
T  31580072 aagcatgaacacccctcggattaggtgtgtttcggtgtcgaacatgtgtcgcgtccgacatcgacacctataattacactcaattatgtgattttct 31580168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 383 - 506
Target Start/End: Original strand, 29758119 - 29758242
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacac 482  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  29758119 taatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttagaggtagttactcaaactaatctctatatataggaacac 29758218  T
Q  483 tattgtattcattcattatctttt 506  Q
    ||||||| ||||||||||||||||    
T  29758219 tattgtactcattcattatctttt 29758242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 24009409 - 24009314
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||    
T  24009409 aagcacggacactccttggataaggcgtgtccccgtgtcagacacgtgtcgtgtccgacaccgacacata-atttacactgcattttgtgattttct 24009314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 62 - 190
Target Start/End: Original strand, 20242680 - 20242808
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttag 161  Q
    |||||| | |||||||| |||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||       ||||    
T  20242680 acactcttcggataaggcgtgtcctcgtgtcagacacgtgttgtgtccgacaccgacacatataattacactgaattatgtgattttctaaaaaaattag 20242779  T
Q  162 ttgtgtcggcgtgtccgtatccgtgtcgt 190  Q
    ||||||||||||||| || ||| ||||||    
T  20242780 ttgtgtcggcgtgtcagtgtccatgtcgt 20242808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 500 - 561
Target Start/End: Original strand, 20957729 - 20957790
Alignment:
Q  500 atcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 561  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20957729 atcttttgtcaaatctagtttactctactatgagtcactatgggtatctcccacatgaatac 20957790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 500 - 560
Target Start/End: Original strand, 20957557 - 20957617
Alignment:
Q  500 atcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatgaata 560  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20957557 atcttttgtcaaatctagtttactctactatgagtcactatgggtatctcccacatgaata 20957617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 18840958 - 18841037
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacact 133  Q
    ||||||| |||||||| |||| ||||||||||| ||||| |||| |||||||||||||||||||||| | ||||||||||    
T  18840958 aagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtcgtgtctgacaccgacacttgtaattacact 18841037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 2438664 - 2438758
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||| |||||||||| ||||||||||| | ||||||||||| ||| |||||||||    
T  2438664 aagcacggacactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacttgtaattacactgaattatgtgatttt 2438758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 54 - 179
Target Start/End: Original strand, 36096309 - 36096445
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac-----------atataattacactgcattttgt 142  Q
    ||||||| |||||| |||| ||||| ||||||||||||| ||||||||||||||| |||| ||||||           ||||||||||||||||||||||    
T  36096309 aagcacggacactctttggttaaggcgtgtccccgtgtcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataattacactgcattttgt 36096408  T
Q  143 gattttctnnnnnnnttagttgtgtcggcgtgtccgt 179  Q
    ||||||||       |||| |||||||||||||||||    
T  36096409 gattttctaaaaaatttagctgtgtcggcgtgtccgt 36096445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 28596583 - 28596503
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactg 134  Q
    ||||||| |||||||| |||| ||| ||||||  ||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  28596583 aagcacggacactcctcggattaggagtgtccgagtgtcggacacgtgtcgtgtccgacaccgacacttataattacactg 28596503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 15972987 - 15972851
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| ||| || | |||| ||||||||||| | ||| ||||||||||||||| ||||||||||| | ||||||||||| ||| ||| ||||| |       
T  15972987 aagcacggacattcttcggattaggtgtgtcccggcgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactgaattgtgtaattttttcaa 15972888  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgt 190  Q
        ||| ||||||||||||||| || ||||||||||    
T  15972887 attattaattgtgtcggcgtgtcagtgtccgtgtcgt 15972851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 12224337 - 12224243
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||| |||||||||||||| ||| ||||||| ||||| ||||||| ||||||| ||||||||||| | |||||||| || ||| || ||||||    
T  12224337 aagcacaaacactccttggattaggcgtgtcccagtgtcggacacgtatcgtgtccgacaccgacacttgtaattacattggattatgggatttt 12224243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 34784983 - 34785085
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    ||||||||||||||||||||||||  ||| |||||||||||       ||||||||||||| ||||| || |||||||||| |  || ||||||||||||    
T  34784983 gacaccgacacatataattacactaaattatgtgattttctaaaaaaattagttgtgtcggtgtgtcagtgtccgtgtcgtgtctggggtccgtgtccgt 34785082  T
Q  210 atc 212  Q
    |||    
T  34785083 atc 34785085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 34993927 - 34994004
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattaca 131  Q
    |||||||||||||||||| || ||| ||||||| ||||| ||||| ||||||||  ||||| ||||||||||||||||    
T  34993927 aagcacgaacactccttgaattaggcgtgtcccagtgtcggacacatgtcgtgttcgacactgacacatataattaca 34994004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 40361739 - 40361865
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgtttt 193  Q
    |||||||||||||||||||||| ||| |||||||||||||  ||| ||| ||||| |       ||| | |||||   ||||||||||| ||||||| ||    
T  40361739 gacacgtgtcgtgtctgacaccaacagatataattacactaaattatgtaattttttcaaattattaatagtgtcatagtgtccgtatctgtgtcgtgtt 40361838  T
Q  194 cggtgtccgtgtccgtatccattcttc 220  Q
    |||| ||||||||||||||||| ||||    
T  40361839 cggtatccgtgtccgtatccatgcttc 40361865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 5367292 - 5367213
Alignment:
Q  68 cttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattt 147  Q
    ||||||| ||| ||||||| | ||| || | |||||||||| ||||||||||||||||||||||||| ||| ||||||||    
T  5367292 cttggattaggcgtgtcccggagtcggatatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgattt 5367213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 5040845 - 5040754
Alignment:
Q  57 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||| ||||||||||||  ||| ||||||| | ||| ||||| ||||||||| ||||||||||| | |||||||| || ||| |||||||||    
T  5040845 cacggacactccttggactaggcgtgtcccggcgtcggacacatgtcgtgtccgacaccgacacttgtaattacattgaattatgtgatttt 5040754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 37411198 - 37411285
Alignment:
Q  63 cactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| |||  ||| ||||||| ||||| |||||| |||||||  |||| ||||||||||||| |||||| ||| |||||||||||    
T  37411198 cactcctcggactaggcgtgtcccagtgtcggacacgcgtcgtgttcgacatcgacacatataatcacactgaattatgtgattttct 37411285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 18054804 - 18054907
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct-nnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccg 208  Q
    |||||| |||||||||||||||||||| |||||||||||||        |||| ||||||| |||||| || ||| |||||| | ||||||||||||| |    
T  18054804 gacaccaacacatataattacactgcagtttgtgattttctaaaaaaaattagctgtgtcgacgtgtcggtgtccctgtcgtgtccggtgtccgtgtctg 18054903  T
Q  209 tatc 212  Q
    ||||    
T  18054904 tatc 18054907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 29176442 - 29176528
Alignment:
Q  58 acgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtga 144  Q
    ||||||||| ||||||| ||||||||| | ||||| |||| ||| ||||||  ||||| |||| ||||||||||||| ||| |||||    
T  29176442 acgaacacttcttggattaggtgtgtctcagtgtcggacatgtgccgtgtccaacaccaacacttataattacactgaattatgtga 29176528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 26769636 - 26769571
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgaca 119  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| ||||||||||||||| || |||||||    
T  26769636 aagcacggacactcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgaca 26769571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 41843552 - 41843422
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctg-----acaccgacacatataattacactgcattttgtgattttctnnnnnn 156  Q
    |||||||| |||||| | ||||||||||||| ||||||||||| ||| |     ||||||||||||||||||| || | ||| |||||||| ||          
T  41843552 acactcctcggataaagcgtgtccccgtgtcggacacgtgtcgcgtccgacacaacaccgacacatataattataccgaattatgtgatttcctaaaaaa 41843453  T
Q  157 nttagttgtgtcggcgtgtccgtatccgtgt 187  Q
     |||||| |||||||||||| || |||||||    
T  41843452 tttagttttgtcggcgtgtcagtgtccgtgt 41843422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 134
Target Start/End: Complemental strand, 21091837 - 21091757
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactg 134  Q
    ||||||| |||||| | |||  ||||||||||| |||||||||| ||| | |||||||||| ||||| | |||||||||||    
T  21091837 aagcacggacactcttcggaataggtgtgtcccggtgtccgacaggtggcttgtctgacactgacacttgtaattacactg 21091757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 18276594 - 18276539
Alignment:
Q  95 acacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||| || ||||||||||||||| |||||||||||| |||  ||||||||||    
T  18276594 acacgtgtggtatctgacaccgacacacataattacactgaattaagtgattttct 18276539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 31808176 - 31808097
Alignment:
Q  69 ttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||| ||||||||||  |||||  ||| |||||||||   |||| ||||||||||||||||||| ||| |||||||||    
T  31808176 ttggattaggtgtgtccaggtgtcgaacatgtgtcgtgttcaacactgacacatataattacactgaattatgtgatttt 31808097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 434
Target Start/End: Original strand, 18739664 - 18739722
Alignment:
Q  376 gtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttaga 434  Q
    |||||| ||||||| ||||||||||||||| || ||||||| |||||||  ||||||||    
T  18739664 gtatgattaatcaattatagttagttgatacgttaactagagttagtagtctggttaga 18739722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 506
Target Start/End: Complemental strand, 20516103 - 20516053
Alignment:
Q  456 caaactaatctctatatataggaacactattgtattcattcattatctttt 506  Q
    ||||||||| | |||||||| ||||||||||||| ||||||||||| ||||    
T  20516103 caaactaatttttatatataagaacactattgtactcattcattatttttt 20516053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 30717464 - 30717530
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| ||||||||||||| ||| || |||| |||||  |||||||||||||| |||| ||||||    
T  30717464 aagcacggacactccttggattaggcgtatcccagtgtcgaacacgtgtcgtgtccgacaacgacac 30717530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 35056993 - 35056927
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| ||||||||  ||| ||| ||||  ||||||| ||||||||||||||| |||||||||||    
T  35056993 aagcacggacactcctcagattaggcgtgtttccgtgtcggacacgtgtcgtgtccgacaccgacac 35056927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 37419868 - 37419802
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| ||||||  ||||||| |||||||||||    
T  37419868 aagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatcgtgtccgacaccgacac 37419802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 37559091 - 37558997
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| |||| | | |||| || ||||| ||||||||||  ||| ||||||||||| | |||||||| || ||| |||||||||    
T  37559091 aagcacggacactcctcggattaagcgtgtaccggtgtcggacacgtgtcaagtccgacaccgacacttgtaattacattgaattatgtgatttt 37558997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 28678002 - 28677929
Alignment:
Q  80 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgac-----acatataattacactgcattttgtgatttt 148  Q
    ||||||| ||||| ||||| |||||||| ||||||||||     |||||||||||||||| ||| |||||||||    
T  28678002 gtgtccctgtgtcggacacttgtcgtgtttgacaccgacaccgaacatataattacactgaattatgtgatttt 28677929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 34691799 - 34691844
Alignment:
Q  103 cgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||| ||||||||||||||||||||||||| ||| | |||||||    
T  34691799 cgtgtccgacaccgacacatataattacactgaattatatgatttt 34691844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 34714211 - 34714256
Alignment:
Q  103 cgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||| ||||||||||||||||||||||||| ||| | |||||||    
T  34714211 cgtgtccgacaccgacacatataattacactgaattatatgatttt 34714256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Original strand, 38355887 - 38355928
Alignment:
Q  109 tgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||||||| |||||| ||| |||||||||||    
T  38355887 tgacaccgacacatataatcacactgaattatgtgattttct 38355928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 18889592 - 18889632
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||| ||||||||| ||| |||||||||||    
T  18889592 gacaccgacacatatgattacactgaattatgtgattttct 18889632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 30404829 - 30404889
Alignment:
Q  88 gtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||| |||| |||||||||| ||| ||||||| | ||||||||||| ||| |||||||||    
T  30404829 gtgtcggacatgtgtcgtgtccgacgccgacacttgtaattacactgaattatgtgatttt 30404889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 44860378 - 44860338
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||||||||||||| ||| || ||||||||    
T  44860378 gacaccgacacatataattacactgaattatgcgattttct 44860338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 5e-45; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 383 - 506
Target Start/End: Complemental strand, 17403015 - 17402891
Alignment:
Q  383 taatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc-tatatataggaaca 481  Q
    ||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  17403015 taatcaactatagttagttgataagtaaactagagttagtagtttggttagaagttagttagagttagttactcaaactaatctcttatatataggaaca 17402916  T
Q  482 ctattgtattcattcattatctttt 506  Q
    |||||||| ||||||| ||||||||    
T  17402915 ctattgtactcattcaatatctttt 17402891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 391 - 557
Target Start/End: Original strand, 6789627 - 6789791
Alignment:
Q  391 tatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgtat 490  Q
    |||||||||| |||| || ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||     
T  6789627 tatagttagtggataagtgaactagagttagtagcttggttagaagttagttagagttagttactcaaactaatctctatatataggaatactattgtac 6789726  T
Q  491 tcattcattatcttttgttaaatctagtttactctactatgagtcactatgggtatctcccacatga 557  Q
    ||||||| |||||||| || |||||| || | ||||| ||||||  ||||| |||||||||||||||    
T  6789727 tcattcactatctttt-ttcaatcta-ttcattctacaatgagtttctatgagtatctcccacatga 6789791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 13845470 - 13845566
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| ||||||||||||||||| ||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13845470 aagcacggacactccttggataaggcgtgtctccgtgtcagacacgtctcgtgtccgacaccgacacatataattacactgcattttgtgattttct 13845566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 428 - 506
Target Start/End: Original strand, 1140045 - 1140123
Alignment:
Q  428 ggttagaagttagttggagttagttactcaaactaatctctatatataggaacactattgtattcattcattatctttt 506  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  1140045 ggttagaagttagttagagttagttactcaaactaatctctatatataggaacactattgtactcattcatcatctttt 1140123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 54 - 176
Target Start/End: Complemental strand, 35223052 - 35222930
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| |||||||| |||||| | ||||||||||||| |||||||||| |||| |||||||||||||||||||||| || ||| |||||||||||       
T  35223052 aagcacggacactcctcggataaagcgtgtccccgtgtcagacacgtgtcatgtccgacaccgacacatataattacattgaattatgtgattttctaaa 35222953  T
Q  154 nnnnttagttgtgtcggcgtgtc 176  Q
        |||||||||||||||||||    
T  35222952 aatgttagttgtgtcggcgtgtc 35222930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 2941672 - 2941576
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||| |||| | |||||||||||  | ||||| |||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  2941672 aagcacaaacatttcttggataaggcatatccccatgtcagacacgtgtcgtgtccgacaccgacacatataattacactgtattttgtgattttct 2941576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 54 - 203
Target Start/End: Complemental strand, 55401189 - 55401040
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| |||||||| |||| ||| ||||| | ||||| ||||||||||||||| ||||||||||| | ||||||||||  ||| ||||||||| |       
T  55401189 aagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaattatgtgattttttcaa 55401090  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgt 203  Q
        |||||||||||||||| || || |||||||||| | ||||||||||    
T  55401089 attattagttgtgtcggcgtatcagtgtccgtgtcgtatccggtgtccgt 55401040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 56 - 213
Target Start/End: Original strand, 15999957 - 16000120
Alignment:
Q  56 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgt------ctgacaccgacacatataattacactgcattttgtgattttc 149  Q
    ||||| ||||||||||||| ||| ||||||| ||||| ||||||||||||||      | ||||||||||| | || |||||||| ||| ||| |||||     
T  15999957 gcacggacactccttggattaggcgtgtcccggtgtcggacacgtgtcgtgtacgtgtccgacaccgacacttgtagttacactgaattatgttattttt 16000056  T
Q  150 tnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    |       ||||||||||||||||||| || || ||||||| ||||||||||||||||||||||    
T  16000057 ttaaattattagttgtgtcggcgtgtcagtgtctgtgtcgtgttcggtgtccgtgtccgtatcc 16000120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 40993288 - 40993374
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||||| |||| ||| ||||||| ||||| |||| |||||||||| ||||||||||||||||||||||||| ||| |||||||||    
T  40993288 acactcctcggattaggcgtgtcccggtgtcggacatgtgtcgtgtccgacaccgacacatataattacactgaattatgtgatttt 40993374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 28918109 - 28917965
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtc--tgacaccgacacatataattacactgcattttgtgattttctnnnnnnntt 159  Q
    ||||||||||||| ||| ||||||| ||||| |||||||||||||||   ||||||||||| | ||||||||||| ||| ||||||||| |       ||    
T  28918109 acactccttggattaggcgtgtcccagtgtcggacacgtgtcgtgtccacgacaccgacacttgtaattacactgaattatgtgattttttcaaattatt 28918010  T
Q  160 agttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtg 204  Q
    || | |||||||||||| || |||||||||| | |||||||||||    
T  28918009 agctatgtcggcgtgtcagtttccgtgtcgtgtccggtgtccgtg 28917965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 54 - 150
Target Start/End: Original strand, 8789493 - 8789591
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgt--cgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||| |||||||| |||| ||| ||||| | |||||||||| ||||  |||||| ||||||||||||||||||||||| | ||| |||||||||||    
T  8789493 aagcacggacactcctcggattaggcgtgtctcggtgtccgacatgtgtgtcgtgtccgacaccgacacatataattacacggaattatgtgattttct 8789591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 10955056 - 10954944
Alignment:
Q  64 actccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagtt 163  Q
    |||||| |||| ||| ||||||| ||||| ||||||||||||||| ||||||||||| | | ||||||||| ||| ||||||||| |       ||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaattattagtt 10954957  T
Q  164 gtgtcggcgtgtc 176  Q
    |||||||||||||    
T  10954956 gtgtcggcgtgtc 10954944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 57 - 185
Target Start/End: Complemental strand, 18427060 - 18426932
Alignment:
Q  57 cacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnn 156  Q
    |||| ||||||||  ||| ||||||||||| ||| | |||||||||||| || |||||||||| |||||||||||| | ||| ||||||||| |          
T  18427060 cacggacactcctcagattaggtgtgtcccggtgccggacacgtgtcgtatccgacaccgacatatataattacaccgaattatgtgattttttgaaatt 18426961  T
Q  157 nttagttgtgtcggcgtgtccgtatccgt 185  Q
     ||||| |||||||||||||||| |||||    
T  18426960 attagtggtgtcggcgtgtccgtgtccgt 18426932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 483
Target Start/End: Original strand, 20302625 - 20302725
Alignment:
Q  383 taatcaactatagtt-agttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatataggaaca 481  Q
    |||| |||||||||| |||||| |||| ||||||| ||||||| ||||||| |||| ||||  |||| |||| ||||||||||||||||||||| |||||    
T  20302625 taataaactatagtttagttgaaaggttaactagacttagtagattggtta-aagtaagttatagttggttattcaaactaatctctatatataagaaca 20302723  T
Q  482 ct 483  Q
    ||    
T  20302724 ct 20302725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 383 - 475
Target Start/End: Original strand, 20327167 - 20327259
Alignment:
Q  383 taatcaactatagtt-agttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctctatatata 475  Q
    |||| |||||||||| |||||| |||| ||||||| ||||||||||||||| |||| ||||  |||| ||||||||||||||||||| ||||||    
T  20327167 taataaactatagtttagttgaaaggttaactagacttagtagcttggtta-aagtaagttatagttggttactcaaactaatctctctatata 20327259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 14028065 - 14028025
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14028065 gacaccgacacatataattacactgcattttgtgattttct 14028025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 213
Target Start/End: Complemental strand, 7171607 - 7171457
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnnnnnnttag 161  Q
    ||||||||||||| ||| ||||| | ||||| ||||||||||||||| |||||| |||| | ||||||||| | ||| | ||||||| |         ||    
T  7171607 acactccttggattaggcgtgtcgcggtgtcggacacgtgtcgtgtccgacaccaacacttgtaattacaccgaattatatgatttt-tcaaattacaag 7171509  T
Q  162 ttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
     ||||||||| |||| ||||||||||||| | ||||||| ||||||||||||    
T  7171508 ctgtgtcggcatgtcagtatccgtgtcgtgtccggtgtctgtgtccgtatcc 7171457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 20503579 - 20503485
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||| ||||||||||  |||||||||| | ||||||||||| ||| ||| |||||    
T  20503579 aagcacggacactcctcggattaggcgtgtcccggtgtcagacatgtgtcgtgtccaacaccgacacttgtaattacactgaattatgtcatttt 20503485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 25093582 - 25093520
Alignment:
Q  88 gtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||| |||| |||| ||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  25093582 gtgtcggacatgtgttgtgtccgacaccgacacatataattacactgaattgtgtgattttct 25093520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 10335335 - 10335390
Alignment:
Q  158 ttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    ||||||||||||||||||| || |||||||||| | |||||||||||| |||||||    
T  10335335 ttagttgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgttcgtatcc 10335390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 7928515 - 7928470
Alignment:
Q  103 cgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||| ||||||||||||||||||||||||| ||| |||||||||    
T  7928515 cgtgtccgacaccgacacatataattacactgaattatgtgatttt 7928470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 11252050 - 11251996
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||| |||||||||||||||||  |||||||||||| ||| |||||||||||    
T  11252050 gacacgtgttgtgtctgacaccgacac--ataattacactgaattatgtgattttct 11251996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 25065031 - 25064966
Alignment:
Q  55 agcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||||||||||| ||||||   ||||||| ||||| ||||||||||||||| |||||| ||||    
T  25065031 agcacgaacactcctcggataaaccgtgtcccggtgtcagacacgtgtcgtgtccgacaccaacac 25064966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 25775621 - 25775531
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatt 146  Q
    |||||||||||||||| |||| ||| ||||||  ||||| ||||||   |||||| ||||||||||| | ||||||||||| ||| |||||||    
T  25775621 aagcacgaacactcctcggattaggcgtgtcctggtgtcggacacga--cgtgtccgacaccgacacttgtaattacactgaattatgtgatt 25775531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 3631796 - 3631708
Alignment:
Q  56 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtga 144  Q
    ||||| |||||||| |||  ||| ||||||  ||||| |||| |||||||||| ||||| | ||||||||||||||||| ||| |||||    
T  3631796 gcacggacactcctcggactaggcgtgtcctggtgtcggacatgtgtcgtgtccgacactggcacatataattacactgaattatgtga 3631708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 4990972 - 4991069
Alignment:
Q  114 ccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtat 211  Q
    ||||||| | ||||||||||| ||| ||| |||||||       ||||  ||||||| ||||| || |||||||||| ||||||||||||||||||||    
T  4990972 ccgacacttgtaattacactgaattatgtaattttctcaaactattagcggtgtcggagtgtcagtctccgtgtcgtgttcggtgtccgtgtccgtat 4991069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 25074909 - 25074841
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtg-tcgtgtctgacaccgacaca 121  Q
    |||||||||||||||| |||| ||||||||||| ||||| |||||| | | ||||| ||||||||||||    
T  25074909 aagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacaca 25074841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 279
Target Start/End: Original strand, 46299764 - 46299804
Alignment:
Q  239 tgtacgagtttgccgcgtgaaataactactcatactggccc 279  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  46299764 tgtacgagtttgccgcgtgaaataaccactcatacttgccc 46299804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 54 - 149
Target Start/End: Complemental strand, 8842443 - 8842348
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttc 149  Q
    ||||||| |||||||| |||| ||| ||||| |  | ||  ||| ||||||||||||||||||||| ||||||||||||   ||| ||||||||||    
T  8842443 aagcacggacactcctcggattaggcgtgtctcaatatctaacatgtgtcgtgtctgacaccgacatatataattacaccaaattatgtgattttc 8842348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 14338454 - 14338493
Alignment:
Q  80 gtgtccccgtgtccgacacgtgtcgtgtctgacaccgaca 119  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  14338454 gtgtcccggtgtccgatacgtgtcgtgtctgacaccgaca 14338493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 45451642 - 45451571
Alignment:
Q  79 tgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||| | ||||| |||| |||||||||| ||||||||||||||| |||| |||| | | |||||||||||    
T  45451642 tgtgtctcggtgtcggacatgtgtcgtgtccgacaccgacacatattattatactgaagtatgtgattttct 45451571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 4987233 - 4987291
Alignment:
Q  62 acactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    |||||||| |||| ||| ||||||| ||||| |||||||||||||||  ||||||||||    
T  4987233 acactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccaacaccgacac 4987291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 14209238 - 14209172
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| ||||| ||||||| |||||| ||||  ||||  |||||||||||||| |||||||||||    
T  14209238 aagcacggacacttcttggattaggtgtatcccgatgtcgtacacgtgtcgtgtccgacaccgacac 14209172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 16192665 - 16192727
Alignment:
Q  52 ctaagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 114  Q
    |||||||| |||||||||   || |||| |||||| ||||| |||||||||||||||||||||    
T  16192665 ctaagcacaaacactcctcatattaggtatgtcccggtgtcagacacgtgtcgtgtctgacac 16192727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 20691383 - 20691337
Alignment:
Q  104 gtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||||||||| ||||||||| ||| ||| |||||||    
T  20691383 gtgtctgacaccgacacatatgattacactgaattatgtcattttct 20691337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 41961584 - 41961650
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| ||||| || |||| ||| ||||||| ||||| ||||||||||||||| || ||||||||    
T  41961584 aagcacggacacttctcggattaggcgtgtcccagtgtcggacacgtgtcgtgtccgataccgacac 41961650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 46299717 - 46299747
Alignment:
Q  24 tgcatgtctgttctgcaacactgtgtagcta 54  Q
    |||||||||||||||||||||||||||||||    
T  46299717 tgcatgtctgttctgcaacactgtgtagcta 46299747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 523 - 560
Target Start/End: Complemental strand, 9032797 - 9032760
Alignment:
Q  523 tctactatgagtcactatgggtatctcccacatgaata 560  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  9032797 tctactatgagtttctatgggtatctcccacatgaata 9032760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 17579321 - 17579280
Alignment:
Q  365 tttttattagagtatgaataatcaactatagttagttgatag 406  Q
    ||||||||| |  |||||||||||||||||||||||||||||    
T  17579321 tttttattacaagatgaataatcaactatagttagttgatag 17579280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 483
Target Start/End: Original strand, 41874441 - 41874497
Alignment:
Q  426 ttggttagaagttagttggagttagttactcaaactaatctctatatataggaacact 483  Q
    |||||||  |||||||| ||||||||||| ||| |||| |||||||||||||||||||    
T  41874441 ttggttaagagttagttagagttagttacacaa-ctaaactctatatataggaacact 41874497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 158 - 213
Target Start/End: Original strand, 750667 - 750723
Alignment:
Q  158 ttagttgtgtcggcgtgtcc-gtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
    |||||||||||| ||||||  || |||||||||| | ||||||||||||||||||||    
T  750667 ttagttgtgtcgccgtgtcaagtgtccgtgtcgtgtccggtgtccgtgtccgtatcc 750723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 1140012 - 1140044
Alignment:
Q  383 taatcaactatagttagttgataggtaaactag 415  Q
    ||||||||||||||||||||||| |||||||||    
T  1140012 taatcaactatagttagttgataagtaaactag 1140044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 6780404 - 6780444
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactg 134  Q
    ||||||||| ||||| |||||| ||||||||||||||||||    
T  6780404 gacacgtgttgtgtccgacaccaacacatataattacactg 6780444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 14217017 - 14216957
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 114  Q
    ||||||| ||||| || |||| ||||||||||| |||||  |||||||||||||| |||||    
T  14217017 aagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacac 14216957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 14223146 - 14223086
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 114  Q
    ||||||| ||||| || |||| ||||||||||| |||||  |||||||||||||| |||||    
T  14223146 aagcacggacacttctcggattaggtgtgtcccagtgtcgtacacgtgtcgtgtccgacac 14223086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 27505365 - 27505305
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacac 114  Q
    ||||||| |||||||| |||| |||  |||||| ||||| ||||||||||||||| |||||    
T  27505365 aagcacggacactcctcggattaggcatgtcccggtgtcggacacgtgtcgtgtcagacac 27505305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 46300108 - 46300136
Alignment:
Q  302 atcattaatgaatagttattgaattttaa 330  Q
    |||||||||||||||||||||||||||||    
T  46300108 atcattaatgaatagttattgaattttaa 46300136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 368 - 483
Target Start/End: Original strand, 39129 - 39243
Alignment:
Q  368 ttattagagtatgaataatcaactatagttagttgataggtaaactagaattagtagcttggttagaagttagttggagttagttactcaaactaatctc 467  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||  |||||||||| | |||||| |||    
T  39129 ttattagagtatgaataatcaactatagttagttgataagtaaactagagttagtagcttggttagaagttagttaaagttagttacac-aactaaactc 39227  T
Q  468 tatatataggaacact 483  Q
    ||||||||||||||||    
T  39228 tatatataggaacact 39243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 407 - 566
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| |||||||| |||| ||||||||||| ||||| |||||| |||||||| ||||||||||| | ||||||||||| ||||||||||||| |       
T  407 aagcacggacactcctcggattaggtgtgtcccggtgtcggacacgcgtcgtgtccgacaccgacacttgtaattacactgaattttgtgattttttcaa 506  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatcc 213  Q
        ||||  |||||||||| || || |||||| ||| ||||||||||||||||||||||    
T  507 attattagcagtgtcggcgtatcagtgtccgtggcgtgttcggtgtccgtgtccgtatcc 566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 213
Target Start/End: Complemental strand, 9956 - 9853
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    ||||||||||||||||||||||||||||||| |||||||||       |||| |||||||||||||| || ||| |||||| | ||||||||||||||||    
T  9956 gacaccgacacatataattacactgcattttatgattttctaaaaaaattagctgtgtcggcgtgtcggtgtccatgtcgtgtccggtgtccgtgtccgt 9857  T
Q  210 atcc 213  Q
    ||||    
T  9856 atcc 9853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 220
Target Start/End: Complemental strand, 8912 - 8746
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| | ||||||  ||| ||| ||||| | ||||| ||||||||||||||| ||||||||||| | ||||||||||  ||  | ||||||| |       
T  8912 aagcacggagactcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacaccgacacttgtaattacactaaataatatgattttttcaa 8813  T
Q  154 nnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtatccattcttc 220  Q
        |||| |||||||||||||| || |||||||||| | |||||||||||||||||||||| ||||    
T  8812 attattagctgtgtcggcgtgtcagtgtccgtgtcgtgtccggtgtccgtgtccgtatccatgcttc 8746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 54 - 209
Target Start/End: Complemental strand, 13520 - 13359
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgaca------catataattacactgcattttgtgattt 147  Q
    ||||||| ||||||||||||| ||||||||||  ||||| ||| ||||||||||| ||||||||||      | | ||||| ||||| ||| ||||||||    
T  13520 aagcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacaccgacccttgtaattgcactgaattatgtgattt 13421  T
Q  148 tctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    |||       ||||||||||||||||||| || |||||||| | | |||||||||| |||||    
T  13420 tctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgt 13359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 21807 - 21968
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgaca------catataattacactgcattttgtgattt 147  Q
    ||||||| ||||||||||||| ||||||||||  ||||| ||| ||||||||||| ||||||||||      | | ||||| ||||| ||| ||||||||    
T  21807 aagcacggacactccttggattaggtgtgtcctagtgtcagacgcgtgtcgtgtccgacaccgacaccgacccttgtaattgcactgaattatgtgattt 21906  T
Q  148 tctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgt 209  Q
    |||       ||||||||||||||||||| || |||||||| | | |||||||||| |||||    
T  21907 tctcaaattattagttgtgtcggcgtgtcagtgtccgtgtcatctccggtgtccgtatccgt 21968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 70392 - 70298
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgatttt 148  Q
    |||||||||||||| | |||| |||  |||||  ||||| ||||||||||||||| ||||||||||| ||||||||||||| ||| ||| |||||    
T  70392 aagcacgaacactcatcggattaggcatgtcctggtgtcggacacgtgtcgtgtccgacaccgacacttataattacactgaattatgttatttt 70298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 5997 - 6037
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  5997 gacaccgacacatataattacactgcattttgtgattttct 6037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 5932 - 5983
Alignment:
Q  56 gcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgt 107  Q
    ||||| ||||||||||||||||| ||||| | ||||| ||||||||||||||    
T  5932 gcacggacactccttggataaggcgtgtctctgtgtcagacacgtgtcgtgt 5983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 14641 - 14520
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttctnnn 153  Q
    ||||||| ||||||||| ||| ||| ||||| | ||||| ||||||||||||||| |||||   ||| | ||||||||||| ||| ||||||||| |       
T  14641 aagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtcgtgtccgacac---cacttgtaattacactgaattatgtgattttttcaa 14545  T
Q  154 nnnnttagttgtgtcggcgtgtccg 178  Q
        |||||||||||||||||||||    
T  14544 attattagttgtgtcggcgtgtccg 14520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 90923 - 90861
Alignment:
Q  88 gtgtccgacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||| ||||||||| |||||||||| ||||| |||||||||||||| ||| | |||||||||    
T  90923 gtgtcggacacgtgttgtgtctgacatcgacatatataattacactgaattatatgattttct 90861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 150
Target Start/End: Complemental strand, 17844 - 17788
Alignment:
Q  94 gacacgtgtcgtgtctgacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||| |||||||||||||||||||||||| |||||||| |  || |||||||||||    
T  17844 gacacatgtcgtgtctgacaccgacacatacaattacaccgagttgtgtgattttct 17788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 45475 - 45555
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacacatataattacactg 134  Q
    ||||||| ||| || |||||| |||  |||| | ||||| ||||||||||||||| ||||||||||| | |||||||||||    
T  45475 aagcacgtacaatctttggattaggcatgtcgcggtgtcagacacgtgtcgtgtccgacaccgacacttgtaattacactg 45555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 130538 - 130430
Alignment:
Q  112 caccgacacatataattacactgcattttgtgattttctnnnnnnnttagttgtgtcggcgtgtccgtatccgtgtcgttttcggtgtccgtgtccgtat 211  Q
    ||||||||| | ||||||||||| ||| ||||||||| |       |||  ||||||||| ||||  | |||||||||| | ||||||||||||||||||    
T  130538 caccgacacttgtaattacactgaattatgtgattttttcaaactattaactgtgtcggcttgtcattgtccgtgtcgtgtccggtgtccgtgtccgtat 130439  T
Q  212 ccattcttc 220  Q
    |||| ||||    
T  130438 ccatgcttc 130430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 241719 - 241653
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    ||||||| ||||| || |||| ||| ||||||| ||||| ||||||||||||||| |||||| ||||    
T  241719 aagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgacaccaacac 241653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 4826 - 4922
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtct--gacaccgacacatataattacactgcattttgtgatttt 148  Q
    ||||||| |||||||| |||| ||| ||||||| ||||| |||| |||||||||    |||||| |||| | ||||||||||| ||| |||||||||    
T  4826 aagcacggacactcctcggattaggcgtgtccctgtgtcggacatgtgtcgtgtacaagacaccaacacttgtaattacactgaattatgtgatttt 4922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 8715 - 8662
Alignment:
Q  54 aagcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgt 107  Q
    ||||||| ||||||||||||| ||| || |||| ||||| ||||||||||||||    
T  8715 aagcacggacactccttggattaggcgtatcccagtgtcggacacgtgtcgtgt 8662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 44529 - 44566
Alignment:
Q  113 accgacacatataattacactgcattttgtgattttct 150  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  44529 accgacacatataattacactgaattatgtgattttct 44566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 3052 - 2987
Alignment:
Q  55 agcacgaacactccttggataaggtgtgtccccgtgtccgacacgtgtcgtgtctgacaccgacac 120  Q
    |||||| |||||||| |||| ||| |||| || |||||  ||||||||||||||||| ||||||||    
T  3052 agcacggacactcctcggattaggcgtgttccggtgtcgaacacgtgtcgtgtctgataccgacac 2987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 9748 - 9788
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||||||||||||| |||  ||||||||||    
T  9748 gacaccgacacatataattacactgaattaagtgattttct 9788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 135313 - 135353
Alignment:
Q  110 gacaccgacacatataattacactgcattttgtgattttct 150  Q
    ||||||||||||||||||||||| | ||| |||||||||||    
T  135313 gacaccgacacatataattacacagaattatgtgattttct 135353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University