View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4206_high_4 (Length: 289)
Name: NF4206_high_4
Description: NF4206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4206_high_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 19059086 - 19059355
Alignment:
| Q |
14 |
caaaaacacacgacactctatgattgatcactttttcactcatcccttgtgttttccatcatacttagaatgattgtttgtccactcaatgaacaattga |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| |||| | |
|
|
| T |
19059086 |
caaaaacacacgaaactctatgattgatcactttttcacacaacccttgtgttttccatcaaacttagaatgattgtttgtccactcaataaacatt--- |
19059182 |
T |
|
| Q |
114 |
gacagtgagatttatatatttcatacaagatttgctttatacta----gctcttttgatttgattagtagatgttaggttaacatattaataaacaaagt |
209 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19059183 |
gacagtgagattcatctatttcatacaagatttgctttatactaaatagctcttttgatttgattagtagatgttaggttaacatattaataaacaaagt |
19059282 |
T |
|
| Q |
210 |
tattattgaaacaaaataatgaactttttgatattctaaagcaacatatatattttttaactttttcatctct |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19059283 |
tattattgaaacaaaataatgaactttttgatattctaaagcaacatatatattttttaactctttcatctct |
19059355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University