View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4206_low_2 (Length: 393)
Name: NF4206_low_2
Description: NF4206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4206_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 2434520 - 2434151
Alignment:
| Q |
16 |
aagtatacaagtgatcaagttagtgatattagtattgaccactgattgtttattccttacagtatcctaaataaagtagcaatgcacgataaattgtact |
115 |
Q |
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| T |
2434520 |
aagtatacaagtgatcaagttagtgatattagtattgaccactgattgtttattccttacagtatcctaaataaagtagcaatgcacgataaattgtact |
2434421 |
T |
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| Q |
116 |
tacgaaaaagttcttaatgtacaaatgctgaaaggttcaatcttatttgagttgttgttagttgctatgattgctaaagttaaataataattctcgtgac |
215 |
Q |
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| T |
2434420 |
tacgaaaaagttcttaatgtacaaatgctgaaaggttcaatcttatttgagttgttgttagttgctatgattgctaaagttaaataataattctcgtgac |
2434321 |
T |
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| Q |
216 |
ttgtcaaacggtgtgtaatttgcagatttatattttaaagacaaacaaaactggattaatgaattattaatggaaaacaaaacaagtgatgcctacagaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434320 |
ttgtcaaacggtgtgtaatttgcagatttatattttaaagacaaacaaaactggattaatgaattattaatggaaaacaaaacaagtgatgcctacagaa |
2434221 |
T |
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| Q |
316 |
aacttgcaattgtatcacatagtatgaattgttcccatatatactttgtactgattgccactttcttctc |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2434220 |
aacttgcaattgtatcacatagtatgaattgttcccatatatactttgtactgattgccactttcttctc |
2434151 |
T |
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