View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4206_low_3 (Length: 350)
Name: NF4206_low_3
Description: NF4206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4206_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 336
Target Start/End: Complemental strand, 41611156 - 41610827
Alignment:
| Q |
7 |
acatcatcaacaaaaattatatttggtcatgtcatttccaacccaattcaattacttggtaaaattggtggatttgtaactacaatcttagcaattcttg |
106 |
Q |
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| T |
41611156 |
acatcatcaacaaaaattatatttggtcatgtcatttccaacccaattcaattacttggtaaaattggtggatttgtaactacaatcttagcaattcttg |
41611057 |
T |
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| Q |
107 |
gtataagcctagctacaattacaaccaatattgctgccaatgttgtagcacctgcaaacgctcttgtaaatcttagtccaatgtggttcaattttagaag |
206 |
Q |
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| T |
41611056 |
gtataagcctagctacaattacaaccaatattgctgccaatgttgtagcacctgcaaacgctcttgtaaatcttagtccaatgtggttcaattttagaag |
41610957 |
T |
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| Q |
207 |
aggagctatattaacagcatttcttggaattgcatttcaaccttggaagcttcttaaatcaagtgagacctttgtatatacttggttagttggttattct |
306 |
Q |
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| T |
41610956 |
aggagctatattaacagcatttcttggaattgcatttcaaccttggaagcttcttaaatcaagtgagagctttgtgtatacttggttagttggttattct |
41610857 |
T |
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| Q |
307 |
gcattgatgggtccaattggaggaattatt |
336 |
Q |
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| T |
41610856 |
gcattgatgggtccaattggaggaattatt |
41610827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 10 - 329
Target Start/End: Original strand, 27112687 - 27113006
Alignment:
| Q |
10 |
tcatcaacaaaaattatatttggtcatgtcatttccaacccaattcaattacttggtaaaattggtggatttgtaactacaatcttagcaattcttggta |
109 |
Q |
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| T |
27112687 |
tcatctacaaaagtgatatttggtgaagttatttcaaatccaattcaacttcttggtagaattggtggatttacaactagtgtacttgcaattgttggta |
27112786 |
T |
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| Q |
110 |
taagcctagctacaattacaaccaatattgctgccaatgttgtagcacctgcaaacgctcttgtaaatcttagtccaatgtggttcaattttagaagagg |
209 |
Q |
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| T |
27112787 |
taagtcttgcaactttaacaactaatattgctgctaatgttgttgcacctgccaatgctcttgttaatcttaacccttcatggttcacttttagaagagg |
27112886 |
T |
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| Q |
210 |
agctatattaacagcatttcttggaattgcatttcaaccttggaagcttcttaaatcaagtgagacctttgtatatacttggttagttggttattctgca |
309 |
Q |
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| T |
27112887 |
tgctattttaactgcaatacttggaattgtgtttcaaccttggaggcttttgaagtctagtgagagttttgtttatacttggttagttggttattctgca |
27112986 |
T |
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| Q |
310 |
ttgatgggtccaattggagg |
329 |
Q |
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| T |
27112987 |
ttgatgggtccaattggagg |
27113006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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