View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4206_low_5 (Length: 270)

Name: NF4206_low_5
Description: NF4206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4206_low_5
NF4206_low_5
[»] chr8 (6 HSPs)
chr8 (64-228)||(42841559-42841724)
chr8 (20-175)||(45375152-45375308)
chr8 (20-178)||(1569406-1569565)
chr8 (21-175)||(43161892-43162048)
chr8 (67-175)||(33112285-33112394)
chr8 (36-77)||(42841504-42841545)
[»] chr7 (4 HSPs)
chr7 (20-176)||(47077133-47077290)
chr7 (20-177)||(36105970-36106128)
chr7 (28-177)||(11993059-11993210)
chr7 (50-140)||(23090025-23090115)
[»] chr5 (5 HSPs)
chr5 (20-178)||(33451281-33451440)
chr5 (20-175)||(10360373-10360529)
chr5 (28-181)||(13563345-13563497)
chr5 (73-170)||(42249577-42249675)
chr5 (21-175)||(9423985-9424140)
[»] chr1 (5 HSPs)
chr1 (20-175)||(52128938-52129094)
chr1 (21-175)||(47215237-47215391)
chr1 (21-177)||(45811823-45811979)
chr1 (68-175)||(1883982-1884090)
chr1 (127-175)||(27582196-27582244)
[»] chr3 (4 HSPs)
chr3 (20-175)||(34267649-34267805)
chr3 (20-175)||(46960613-46960768)
chr3 (21-175)||(44449962-44450118)
chr3 (92-175)||(53829243-53829327)
[»] chr6 (2 HSPs)
chr6 (20-138)||(29428617-29428735)
chr6 (21-175)||(34993203-34993359)
[»] chr2 (1 HSPs)
chr2 (20-129)||(41045095-41045204)
[»] chr4 (2 HSPs)
chr4 (20-175)||(39215861-39216017)
chr4 (21-169)||(42946616-42946766)


Alignment Details
Target: chr8 (Bit Score: 146; Significance: 6e-77; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 42841559 - 42841724
Alignment:
Q  64 aaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgacccctgttaaattgacctaagat-gaaaaatataccaatttccccat 162  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||    
T  42841559 aaacatttaagagcaattttatccattgatctctattaacattaaatcaatgaccgctgttaaattgacctaagataggaaaatataccaatttccccat 42841658  T
Q  163 gctaaacgttgccctattaatcatcctctgcatgttttttgcttggttgctaaaacaaaaccaaga 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42841659 gctaaacgttgccctattaatcatcctctgcatgttttttgcttggttgctaaaacaaaaccaaga 42841724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 45375308 - 45375152
Alignment:
Q  20 ggtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45375308 ggtacatcagttttttaaaattaaaatccatccaaattcaaggtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatggccc 45375209  T
Q  120 ctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgcc 175  Q
     ||||||||||||||||||| || ||||||  |||||||||||||||||||||||||    
T  45375208 ttgttaaattgacctaagatggagaaatatgtcaatttccccatgctaaacgttgcc 45375152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 1569565 - 1569406
Alignment:
Q  20 ggtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||    
T  1569565 ggtacatcagttttttaaaattaaaatccatccaagttcaaggtaaacatttaagagcaatcttatccattaatctctattaacattaaatcaatagccc 1569466  T
Q  120 ctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgcccta 178  Q
     ||||||||||| ||||||| ||||||||| |||||||||| |||||||| |||||||||    
T  1569465 ttgttaaattgatctaagatggaaaaatatgccaatttcccaatgctaaaggttgcccta 1569406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 43162048 - 43161892
Alignment:
Q  21 gtacatcagttttttaaaattaaaatc-catccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    |||||| |||||||||| ||||||||| ||| ||||||  | ||||| |||  ||||||||| ||||||||||| | || ||| ||||||||||||||||    
T  43162048 gtacattagttttttaatattaaaatctcattcaagttttaggtaaatattctagagcaatcatatccattgatatttagtaatattaaatcaatgaccc 43161949  T
Q  120 ctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgcc 175  Q
     |||||||||||| |||| | |  ||||||| |||||| |||||||||||| |||||    
T  43161948 ttgttaaattgacttaagttagggaaatatatcaatttgcccatgctaaacattgcc 43161892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 175
Target Start/End: Complemental strand, 33112394 - 33112285
Alignment:
Q  67 catttaagagcaatcttatccattgatctctattaacattaaatcaatgacccctgttaaattgacctaagat-gaaaaatataccaatttccccatgct 165  Q
    ||||| |||| |||| ||||||||||  | || ||| |||||||||||||  | | ||||||||||||||||| | ||||||| ||||||||||||||||    
T  33112394 catttgagagtaatcctatccattgacatttactaatattaaatcaatgattcttattaaattgacctaagataggaaaatatgccaatttccccatgct 33112295  T
Q  166 aaacgttgcc 175  Q
    |||| |||||    
T  33112294 aaacattgcc 33112285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 42841504 - 42841545
Alignment:
Q  36 aaaattaaaatccatccaagttcaaagtaaacatttaagagc 77  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  42841504 aaaattaaaatccatccaagttcaaggtaaacatttaagagc 42841545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 47077290 - 47077133
Alignment:
Q  20 ggtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  47077290 ggtacatcagttttttaaaattaaaatccatccaagttcaaggtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatggccc 47077191  T
Q  120 ctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgccc 176  Q
     || |||||||||||||||| |  ||||||  ||||||||||||||||||||||||||    
T  47077190 ttgataaattgacctaagatagggaaatatgtcaatttccccatgctaaacgttgccc 47077133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 36106128 - 36105970
Alignment:
Q  20 ggtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    ||||||||| ||||||||||||||||||||||||| || ||| |||||||||| || |||||||||| |||||||||||||||||||||||||||  | |    
T  36106128 ggtacatcaattttttaaaattaaaatccatccaaatttaaaataaacatttatgaacaatcttatctattgatctctattaacattaaatcaatagctc 36106029  T
Q  120 ctgttaaattgacctaagatga-aaaatataccaatttccccatgctaaacgttgccct 177  Q
     |||||||||||||||||||||  |||||| |||||||| ||||||||||| |||||||    
T  36106028 ttgttaaattgacctaagatgaggaaatatgccaatttctccatgctaaacattgccct 36105970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 11993210 - 11993059
Alignment:
Q  28 agttttttaaaattaaaatc-catccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgacccctgttaa 126  Q
    |||||||||| ||||||||| ||||||||||| | |||||||||| ||||||||| ||||||||| | | |||||  |||||||||||||||| | ||||    
T  11993210 agttttttaatattaaaatctcatccaagttctaggtaaacattttagagcaatcctatccattggtatttattagtattaaatcaatgacccttattaa 11993111  T
Q  127 attgacctaagat-gaaaaatataccaatttccccatgctaaacgttgccct 177  Q
    ||||||||||| | |  ||||||| ||| || ||||||||| ||||||||||    
T  11993110 attgacctaagttggggaaatatatcaacttgcccatgctatacgttgccct 11993059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Complemental strand, 23090115 - 23090025
Alignment:
Q  50 tccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgacccctgttaaattgacctaagatg 140  Q
    ||||||||| || |||||||  ||||  |||| || |||||| | | |||||| |||||||||||||| | ||||||||||||| ||||||    
T  23090115 tccaagttccaattaaacatccaagaagaatcatagccattggtatttattaatattaaatcaatgactcttgttaaattgacccaagatg 23090025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 178
Target Start/End: Complemental strand, 33451440 - 33451281
Alignment:
Q  20 ggtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    |||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  33451440 ggtacatcagttatttaaaattaaaatccatccaaattcaaggtaaacatttaagagcaatcttatccattgatctctgttaacattaaatcaatggccc 33451341  T
Q  120 ctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgcccta 178  Q
     ||||||||||||||||||| || |||||| |||||||| ||||||||||||||||||||    
T  33451340 ttgttaaattgacctaagatggagaaatatgccaatttctccatgctaaacgttgcccta 33451281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 10360529 - 10360373
Alignment:
Q  20 ggtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    |||| |||||||||||||||||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||    
T  10360529 ggtatatcagttttttaaaattaaaattcatccaagttcaaggtaaatatttaagaacaatcttatccattgatctctgttaacattaaatcaatggccc 10360430  T
Q  120 ctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgcc 175  Q
     ||||||||||||||||||| |  |||||| ||||||| ||||||||||||||||||    
T  10360429 ttgttaaattgacctaagatggggaaatatgccaattttcccatgctaaacgttgcc 10360373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 13563345 - 13563497
Alignment:
Q  28 agttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgacccctgttaaa 127  Q
    |||| ||||| ||||||| ||| |||||||| | ||||| |||| |||||||| |||||||||| | | || |||  ||||||||||| ||| |||||||    
T  13563345 agttatttaatattaaaacccaaccaagttctaggtaaatatttgagagcaattttatccattggtatttaataa--ttaaatcaatggcccttgttaaa 13563442  T
Q  128 ttgacctaagatgaa-aaatataccaatttccccatgctaaacgttgccctatta 181  Q
    ||||| ||||||| | ||||||  ||||||||||||||||||||||||| |||||    
T  13563443 ttgacttaagatggagaaatatgtcaatttccccatgctaaacgttgccgtatta 13563497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 42249675 - 42249577
Alignment:
Q  73 agagcaatcttatccattgatctctattaacattaaatcaatgacccctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacg 170  Q
    |||||||||||||||||| || | |||||| |||||||||||||||| ||||||||||||||||| | | |||||||| |||||| |||||||||||||    
T  42249675 agagcaatcttatccattaatatttattaatattaaatcaatgacccttgttaaattgacctaagttaggaaaatatatcaatttgcccatgctaaacg 42249577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 9423985 - 9424140
Alignment:
Q  21 gtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgacccc 120  Q
    |||||| |||||||||| |||||||||    ||||||  | |||||||||| |||| |||| ||||||||| | | |||||  |||||||||||| | |     
T  9423985 gtacattagttttttaatattaaaatctcaacaagttgtaggtaaacattttagagtaatcctatccattggtatttattagtattaaatcaatggctct 9424084  T
Q  121 tgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgcc 175  Q
    | ||||||||||||||| | |  ||||||| ||| || ||||||||||||||||||    
T  9424085 tattaaattgacctaagttggggaaatatatcaacttgcccatgctaaacgttgcc 9424140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 52129094 - 52128938
Alignment:
Q  20 ggtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    ||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  52129094 ggtacatcagttttttaaaattaaaattcatccaaattcaaggtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatggccc 52128995  T
Q  120 ctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgcc 175  Q
     ||||||||||| ||||||| || |||||| ||||||| ||||||||||||||||||    
T  52128994 ttgttaaattgatctaagatggagaaatatgccaattttcccatgctaaacgttgcc 52128938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 47215237 - 47215391
Alignment:
Q  21 gtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgacccc 120  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||      
T  47215237 gtacatcagttttttaaaattaaaatgcatccaagttcaaggtaaacatttaagagcaatcttatccattgatccctattaacattaaatcaatgacctt 47215336  T
Q  121 tgttaaattgacctaagatgaaaaatataccaatttccccatgctaaacgttgcc 175  Q
    |||||||||||||||| ||   |||||| ||||||||||| ||||||||||||||    
T  47215337 tgttaaattgacctaaaataggaaatatgccaatttccccgtgctaaacgttgcc 47215391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 45811979 - 45811823
Alignment:
Q  21 gtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgacccc 120  Q
    |||||||| |||||||||||||||||| |||||||||||  ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  45811979 gtacatcaattttttaaaattaaaatctatccaagttcatggtaaatatttaagaacaatcttatccattgatctctattaacattaaatcaatgaccct 45811880  T
Q  121 tgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgccct 177  Q
    |||||||| |||||||||| | ||||||| ||||||| ||||||||||| ||||||||    
T  45811879 tgttaaatcgacctaagatgggaaaatatgccaattt-cccatgctaaatgttgccct 45811823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 175
Target Start/End: Complemental strand, 1884090 - 1883982
Alignment:
Q  68 atttaagagcaatcttatccattgatctctattaacattaaatcaatgacccctgttaaattgacctaagatga-aaaatataccaatttccccatgcta 166  Q
    |||| |||| |||| ||||||||||  | || ||| ||||||||||||  || | ||||||||||||||||||  ||||||||||||||||| |||||||    
T  1884090 atttgagagtaatcctatccattgacatttactaatattaaatcaatggtccttattaaattgacctaagatgggaaaatataccaatttccgcatgcta 1883991  T
Q  167 aacgttgcc 175  Q
    ||| |||||    
T  1883990 aacattgcc 1883982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 27582196 - 27582244
Alignment:
Q  127 attgacctaagatgaaaaatataccaatttccccatgctaaacgttgcc 175  Q
    |||||| ||||||| ||||||| |||||||||||||||||||| |||||    
T  27582196 attgacataagatggaaaatatgccaatttccccatgctaaacattgcc 27582244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 34267649 - 34267805
Alignment:
Q  20 ggtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||    
T  34267649 ggtacatcagttttttaaaattaaaatccatccaagtttaaggtaaacatttaagagcaatcttatctattgatctctattaacattaaatcaatagccc 34267748  T
Q  120 ctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgcc 175  Q
     ||||||||||| | ||||| || |||||| ||||||| ||||| ||||||||||||    
T  34267749 ttgttaaattgatcaaagatggagaaatatgccaattttcccatactaaacgttgcc 34267805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 46960768 - 46960613
Alignment:
Q  20 ggtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    |||| |||||||||||||||||||||| ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  46960768 ggtatatcagttttttaaaattaaaattcatccaaatttaaagtaaatatttaagagcaatcttatccattgatctctattaacattaaatcaatggcct 46960669  T
Q  120 ctgttaaattgacctaagatga-aaaatataccaatttccccatgctaaacgttgcc 175  Q
     | |||||||| || |||||||  |||||| ||||||| ||||||||||||||||||    
T  46960668 ttattaaattggccaaagatgaggaaatatgccaattt-cccatgctaaacgttgcc 46960613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 44450118 - 44449962
Alignment:
Q  21 gtacatcagttttttaaaattaaaatc-catccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    |||||| |||||||||| ||||||||| |||||| |||| | |||||||||| ||||||||| ||||||||| | | |||||  |||||||||||| |||    
T  44450118 gtacattagttttttaatattaaaatctcatccatgttctaggtaaacattttagagcaatcctatccattggtatttattagtattaaatcaatggccc 44450019  T
Q  120 ctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgcc 175  Q
     ||||||||||| ||||| | |  ||||||| ||| || ||||||||||||||||||    
T  44450018 ttgttaaattgatctaagttggggaaatatatcaacttgcccatgctaaacgttgcc 44449962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 53829243 - 53829327
Alignment:
Q  92 atctctattaacattaaatcaatgacccctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgcc 175  Q
    ||||||||||| |||||||||||| ||| | ||||||||| ||||||| || |||||| ||||||||||||||||||||| ||||    
T  53829243 atctctattaatattaaatcaatggcccttattaaattgatctaagatggagaaatatgccaatttccccatgctaaacgctgcc 53829327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 29428735 - 29428617
Alignment:
Q  20 ggtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||    
T  29428735 ggtacatcaattttttaaaattaaaatccatccaagttcaaggtaaacatttaagagcaatcttatccattgatctctatcaacattaaatcaatggccc 29428636  T
Q  120 ctgttaaattgacctaaga 138  Q
     |||| |||||||||||||    
T  29428635 ttgttcaattgacctaaga 29428617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 34993203 - 34993359
Alignment:
Q  21 gtacatcagttttttaaaattaaaatc-catccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    |||||| |||||||||| ||||||||| |||||| |||  | |||||||||| ||||||||| ||||||||||| | |||||  |||||||||||| |||    
T  34993203 gtacattagttttttaatattaaaatctcatccatgttttaggtaaacattttagagcaatcatatccattgatatttattagtattaaatcaatggccc 34993302  T
Q  120 ctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgcc 175  Q
     ||||||||||| ||||| | |  ||||||| |||||| | ||| ||||||||||||    
T  34993303 ttgttaaattgatctaagttggggaaatatatcaatttgctcatactaaacgttgcc 34993359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 41045204 - 41045095
Alignment:
Q  20 ggtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  41045204 ggtacatcagttttttaaaattaaaatccatccaaattcaaggtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatggccc 41045105  T
Q  120 ctgttaaatt 129  Q
     |||||||||    
T  41045104 ttgttaaatt 41045095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 39216017 - 39215861
Alignment:
Q  20 ggtacatcagttttttaaaattaaaatccatccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    ||||||| ||||||||||||||||||||||||||| || || |||| |||||||| |||||||||||||||||||| |||||| || || ||||||  ||    
T  39216017 ggtacattagttttttaaaattaaaatccatccaaatttaaggtaagcatttaagcgcaatcttatccattgatctttattaatatcaagtcaatggtcc 39215918  T
Q  120 ctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaacgttgcc 175  Q
     ||||||| ||   |||||| |  ||||||| ||||||| |||||||||||||||||    
T  39215917 ttgttaaactggtttaagatggggaaatatatcaatttcgccatgctaaacgttgcc 39215861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 42946616 - 42946766
Alignment:
Q  21 gtacatcagttttttaaaattaaaatc-catccaagttcaaagtaaacatttaagagcaatcttatccattgatctctattaacattaaatcaatgaccc 119  Q
    |||||| |||||||||| ||||||||| ||| ||||||| |  ||||||||  ||||||||| ||||||||||| | || ||| ||||||||||| ||||    
T  42946616 gtacattagttttttaatattaaaatctcattcaagttctagataaacattctagagcaatcctatccattgatatttaataatattaaatcaataaccc 42946715  T
Q  120 ctgttaaattgacctaagat-gaaaaatataccaatttccccatgctaaac 169  Q
     | ||||||||||||||| | | |||||||| ||||||  |||||||||||    
T  42946716 ttattaaattgacctaagttaggaaaatatatcaatttgtccatgctaaac 42946766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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