View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4206_low_6 (Length: 264)

Name: NF4206_low_6
Description: NF4206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4206_low_6
NF4206_low_6
[»] chr6 (12 HSPs)
chr6 (19-256)||(31561123-31561360)
chr6 (24-248)||(33411487-33411711)
chr6 (19-245)||(33306015-33306241)
chr6 (19-256)||(33059092-33059329)
chr6 (19-256)||(33389601-33389838)
chr6 (19-256)||(33402143-33402380)
chr6 (19-256)||(33287071-33287308)
chr6 (19-256)||(9168300-9168540)
chr6 (19-256)||(33273321-33273558)
chr6 (19-251)||(33642921-33643153)
chr6 (19-248)||(33264178-33264407)
chr6 (19-131)||(28869210-28869322)
[»] chr2 (1 HSPs)
chr2 (19-256)||(17439142-17439379)
[»] scaffold0428 (1 HSPs)
scaffold0428 (19-248)||(8289-8518)
[»] chr4 (12 HSPs)
chr4 (30-256)||(31149882-31150105)
chr4 (23-256)||(31019327-31019557)
chr4 (23-256)||(31029208-31029438)
chr4 (23-248)||(31158776-31158998)
chr4 (178-249)||(31497248-31497319)
chr4 (175-256)||(31489989-31490070)
chr4 (178-249)||(31502420-31502491)
chr4 (23-256)||(31527936-31528166)
chr4 (185-249)||(31477295-31477359)
chr4 (175-256)||(31161332-31161413)
chr4 (23-80)||(31477461-31477518)
chr4 (175-255)||(31483143-31483223)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 31561360 - 31561123
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31561360 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 31561261  T
Q  119 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31561260 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctt 31561161  T
Q  219 tcaatatatgctcatctctagaaatgataataattcta 256  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31561160 tcaatatatgctcatctctagaaatgataataattcta 31561123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 24 - 248
Target Start/End: Original strand, 33411487 - 33411711
Alignment:
Q  24 gaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcataataat 123  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||    
T  33411487 gaccaaacaaaaatgagcccaatactttaattgctagtggtagacctttagcataatctagtatctcatttgccaaattttgataatcactcataataat 33411586  T
Q  124 tttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctttcaat 223  Q
    ||||||||||||||||||||||||||||||||||  || ||| || |    ||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  33411587 tttctcaactttgaaagcttttcgacaaaataactcgtaagaatctgtactattcataagtggaactttgtaaactacatccactccgtactctttcaat 33411686  T
Q  224 atatgctcatctctagaaatgataa 248  Q
    |||||||||||||||||||||||||    
T  33411687 atatgctcatctctagaaatgataa 33411711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 33306015 - 33306241
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||| ||| |||||||||||||||||||||||||| || ||      
T  33306015 attacgaccaaacaaaaatgagcccaatattgtaattgctaggggtagaccattagcataactcaatatctcatctgccaaattttgataattacccaat 33306114  T
Q  119 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctt 218  Q
    ||||| ||||||| ||||||||||||||||||||||||| ||||||| ||||||  |||||| |||||||||||||||| |||||||||||||||||| |    
T  33306115 ataatgttctcaagtttgaaagcttttcgacaaaataacttgtgagattcggccatattcaagagtggaactttgtaaaatacatccactccatactcct 33306214  T
Q  219 tcaatatatgctcatctctagaaatga 245  Q
    |||||||||||||||||||||||||||    
T  33306215 tcaatatatgctcatctctagaaatga 33306241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 33059092 - 33059329
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    |||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||  ||||||| |||| ||||||||||||||| |||||||    
T  33059092 attacgaccaaacaaaaacgagcccaatactttaattgctagtggtagacctttagcataatgtagtatctgatctaccaaattttgataattactcata 33059191  T
Q  119 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctt 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||  ||   |  || ||| |||| |||||||||||||||||||||||||||| |||    
T  33059192 ataattttctcatctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaatagtgaaactttgtaaactacatccactccatacgctt 33059291  T
Q  219 tcaatatatgctcatctctagaaatgataataattcta 256  Q
    |||||| |||||||||||||||||||||||||||||||    
T  33059292 tcaatacatgctcatctctagaaatgataataattcta 33059329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 33389601 - 33389838
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    ||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||| |||||||||||    |||||||||| |||  |||||||    
T  33389601 attacgaccaaacaaaaatgagcccaatactttaattgctagtggaagaccattagcataactcagtatctcaaaatccaaattttggtaactactcata 33389700  T
Q  119 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctt 218  Q
    ||||||||||||  ||||||||||||| ||||||||||| ||||||| |||| | |||||||||||||||||||||||||||| ||||||||||||||||    
T  33389701 ataattttctcatgtttgaaagctttttgacaaaataacttgtgagaatcggtccgattcaaaagtggaactttgtaaactacgtccactccatactctt 33389800  T
Q  219 tcaatatatgctcatctctagaaatgataataattcta 256  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  33389801 tcaatatatgctcatctctagaaatgataattattcta 33389838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 33402143 - 33402380
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    ||||||||| ||||||||||||||||||||| ||||||| || ||||||||  |||||||||||| ||||| || ||||||||||||||||| |||||||    
T  33402143 attacgaccgaacaaaaatgagcccaatactttaattgcaagtggtagaccactagcataattcaatatcttatttgccaaattttgataattactcata 33402242  T
Q  119 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctt 218  Q
    |||||||||||| |||||||||||||||||||||||||| | ||||| |||| |  |||||||||| |||||||||||||||| |||||| |||||||||    
T  33402243 ataattttctcagctttgaaagcttttcgacaaaataacttatgagattcggtccaattcaaaagttgaactttgtaaactacgtccacttcatactctt 33402342  T
Q  219 tcaatatatgctcatctctagaaatgataataattcta 256  Q
    |||||||||| |||||||||||||||||||||||||||    
T  33402343 tcaatatatgttcatctctagaaatgataataattcta 33402380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 33287071 - 33287308
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    ||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||| | ||||| ||| |||||  ||||||    
T  33287071 attacgaccaaacaaaaatgagcccaatactttaattgctaacggtagaccattagcataatccagtatctcatataccaaactttcataatttctcata 33287170  T
Q  119 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctt 218  Q
    |||||||||||  |||||||||||||||||||||||||||||||||  ||   |  || ||| |||||||||||||| ||||||||||||||||||||||    
T  33287171 ataattttctcttctttgaaagcttttcgacaaaataacatgtgagcttcattccaatccaagagtggaactttgtagactacatccactccatactctt 33287270  T
Q  219 tcaatatatgctcatctctagaaatgataataattcta 256  Q
     |||||||||||||||||||||||||||||||||||||    
T  33287271 ccaatatatgctcatctctagaaatgataataattcta 33287308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 9168300 - 9168540
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    ||||||||||||||||||||||||||||||| |||||||||  ||||||||||| |||||||| |||||||||| ||||||||||||||||| |||  ||    
T  9168300 attacgaccaaacaaaaatgagcccaatactttaattgctaatggtagacctttcgcataattaagtatctcatatgccaaattttgataattactgcta 9168399  T
Q  119 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatcc---actccatact 215  Q
    ||| ||||||||| |||||||||||||||| ||||||||  |||||| || | ||||||||| ||||||||||||||||||||||||   ||||||||||    
T  9168400 atagttttctcaagtttgaaagcttttcgataaaataactagtgagattcagtctgattcaagagtggaactttgtaaactacatccagtactccatact 9168499  T
Q  216 ctttcaatatatgctcatctctagaaatgataataattcta 256  Q
    ||||||||||||||||||||| ||| | |||||||||||||    
T  9168500 ctttcaatatatgctcatctcaagatacgataataattcta 9168540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 33273321 - 33273558
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||  || |||||||  || || |||| ||||| |||||||    
T  33273321 attacgaccaaacaaaaatgagcccaatactataattgctagtggtagaccattagcataatctagaatctcatacgctaagttttcataattactcata 33273420  T
Q  119 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctt 218  Q
    |||| |||||||| ||||||||||||| ||||||||||| ||||||| || | |  ||||||||||||||||||||||||| ||||||||||||| | ||    
T  33273421 ataactttctcaaatttgaaagctttttgacaaaataacttgtgagaatctgtccaattcaaaagtggaactttgtaaactgcatccactccatagtatt 33273520  T
Q  219 tcaatatatgctcatctctagaaatgataataattcta 256  Q
    |||||||||||||||||||||||||||| |||||||||    
T  33273521 tcaatatatgctcatctctagaaatgattataattcta 33273558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 33643153 - 33642921
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    ||||||||||||||||||||||| ||||| |||||||||||| |||||||| |||||||||   ||||  |||  |||||| ||| |||||| |||||||    
T  33643153 attacgaccaaacaaaaatgagctcaatattgtaattgctagtggtagaccattagcataacgtagtacatcagatgccaactttcgataattactcata 33643054  T
Q  119 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctt 218  Q
    ||| ||||||||| ||||||||||||||||||||| ||| ||  ||| || | ||||||||||||||||||||||||||||||||||||||||||| |||    
T  33643053 atagttttctcaagtttgaaagcttttcgacaaaacaacttgcaagattctgtctgattcaaaagtggaactttgtaaactacatccactccatacactt 33642954  T
Q  219 tcaatatatgctcatctctagaaatgataataa 251  Q
    |||||||||||||||||||||||||||||||||    
T  33642953 tcaatatatgctcatctctagaaatgataataa 33642921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 33264178 - 33264407
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    |||||||||||||||| |||| ||||||||| |||||||||| |||||||| ||||||||  ||| |||||||| ||||||||||| ||||| |||||||    
T  33264178 attacgaccaaacaaatatgaacccaatactttaattgctagtggtagaccattagcatatctcaatatctcatttgccaaatttttataattactcata 33264277  T
Q  119 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctt 218  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||||  ||||||  ||||| |||||| |||||||||||||||||||||  ||| ||||    
T  33264278 ataattttctcagctttgaaagcttttctacaaaataacttgtgagcttcggcccaattcagaagtgggactttgtaaactacatccactttatattctt 33264377  T
Q  219 tcaatatatgctcatctctagaaatgataa 248  Q
    |||||||||| |||||||| ||||||||||    
T  33264378 tcaatatatgttcatctcttgaaatgataa 33264407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 28869322 - 28869210
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    |||||||||||||||| |||||  ||||| |||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||     
T  28869322 attacgaccaaacaaatatgagtacaatattgtaattgctagcggtagacctttagcataatccagtatcacatttgccaaattttgataattactcatg 28869223  T
Q  119 ataattttctcaa 131  Q
    |||| ||| ||||    
T  28869222 ataactttttcaa 28869210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 17439379 - 17439142
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    ||||| |||||||||||||||||||| |||| |||||||||| |||||||| ||||||||  |||||||||||| ||||||||||||||||| |||||||    
T  17439379 attacaaccaaacaaaaatgagcccattactttaattgctagtggtagaccattagcatatctcagtatctcatttgccaaattttgataattactcata 17439280  T
Q  119 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctt 218  Q
    ||||| ||||||||||||||||||||||||||||||||| ||| ||| ||   |  ||||||||||||||||||||||||||||||||||||||||| ||    
T  17439279 ataatgttctcaactttgaaagcttttcgacaaaataacttgtaagaatctctccaattcaaaagtggaactttgtaaactacatccactccatactttt 17439180  T
Q  219 tcaatatatgctcatctctagaaatgataataattcta 256  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  17439179 tcaatatatgctcatctctagaaatgataatgattcta 17439142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 8289 - 8518
Alignment:
Q  19 attacgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcata 118  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||||||||||||   ||||     
T  8289 attacgaccagacaaaaatgagcccaatactgtaattgctagtggtagaccattagcgtaattcagtatctcatatgccaaattttgataatttttcatg 8388  T
Q  119 ataattttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctt 218  Q
    ||||||||||||| ||||||||||||| ||||||||||| |||||||||||| |  || ||| |||||||||||||||||||||||||||  ||| ||||    
T  8389 ataattttctcaagtttgaaagctttttgacaaaataacttgtgagactcggtccaatccaacagtggaactttgtaaactacatccactttatattctt 8488  T
Q  219 tcaatatatgctcatctctagaaatgataa 248  Q
    |||||||||| |||||||| ||||||||||    
T  8489 tcaatatatgttcatctcttgaaatgataa 8518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 256
Target Start/End: Original strand, 31149882 - 31150105
Alignment:
Q  30 acaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcataataattttctc 129  Q
    ||||||| ||||| |||||| |||||||||| ||||| || ||||||||  | |||||||||  |||||| || | ||||  ||||||||||   |  ||    
T  31149882 acaaaaacgagcctaatactttaattgctagaggtaggccattagcataccttagtatctcagatgccaacttatcataactactcataata---tgatc 31149978  T
Q  130 aactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctttcaatatatgc 229  Q
    || ||||||||||||||||| ||||||     |||| || | | ||||||  ||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  31149979 aagtttgaaagcttttcgactaaataattgaagagagtcagtccgattcaggagtggaactttgtaaacaacatccactccatactctttcaagatatgc 31150078  T
Q  230 tcatctctagaaatgataataattcta 256  Q
    || ||||||||||| ||||| ||||||    
T  31150079 tcgtctctagaaattataatgattcta 31150105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 31019327 - 31019557
Alignment:
Q  23 cgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcataataa 122  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| || || ||||||   ||  | |||  |||||  || | |||| |||||||||||     
T  31019327 cgaccaaacaaaaatgagcccaatactttaattgctagtggtaggccattggcataagatagcgtgtcaagtgccagtttatcataaccactcataata- 31019425  T
Q  123 ttttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctttcaa 222  Q
      |  |||| ||||||||||||| ||||||||||     |||| | || || |||||| |||||||||||||||||| |||| ||||||||||| |||||    
T  31019426 --tgatcaagtttgaaagctttttgacaaaataattgaagagagttggtctcattcaagagtggaactttgtaaacttcatcaactccatactcattcaa 31019523  T
Q  223 tatatgctcatctctagaaatgataataattcta 256  Q
     |||||||||||||||||||| ||||| ||||||    
T  31019524 gatatgctcatctctagaaattataatgattcta 31019557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 31029208 - 31029438
Alignment:
Q  23 cgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcataataa 122  Q
    ||||||||||||||||||||||||||| |||| ||||| ||||| || || ||||||   ||| | |||  |||||  || | |||| ||||||||| |     
T  31029208 cgaccaaacaaaaatgagcccaatactttaatagctagtggtaggccattggcataagatagtgtgtcaagtgccattttatcataaccactcataaca- 31029306  T
Q  123 ttttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctttcaa 222  Q
      | ||||| ||||||||||||| ||||||||||     |||| | || || |||||| |||||||||||||||||| |||| ||||||||||| |||||    
T  31029307 --tgctcaagtttgaaagctttttgacaaaataattgaagagagttggtctcattcaagagtggaactttgtaaacttcatcaactccatactcattcaa 31029404  T
Q  223 tatatgctcatctctagaaatgataataattcta 256  Q
     |||||||||||||||||||| ||||| ||||||    
T  31029405 gatatgctcatctctagaaattataatgattcta 31029438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 248
Target Start/End: Original strand, 31158776 - 31158998
Alignment:
Q  23 cgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcataataa 122  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| | ||||| |||  || ||| || | | ||  ||||||||||     
T  31158776 cgaccaaacaaaaatgatcccaatactttaattgctagcggtagaccattagcataactgagtatgtcaaatgtcaacttatcaaaactactcataata- 31158874  T
Q  123 ttttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctttcaa 222  Q
      |  |||| ||||||||||||| ||||||| ||     |||| |  | |  |||||| ||||||||||||||||||||||| |||||||||||||||||    
T  31158875 --tgatcaagtttgaaagctttttgacaaaacaattgaagagagttagtcccattcaagagtggaactttgtaaactacatcaactccatactctttcaa 31158972  T
Q  223 tatatgctcatctctagaaatgataa 248  Q
     ||||| |||||||||||||| ||||    
T  31158973 gatatgttcatctctagaaattataa 31158998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 31497319 - 31497248
Alignment:
Q  178 caaaagtggaactttgtaaactacatccactccatactctttcaatatatgctcatctctagaaatgataat 249  Q
    |||||| ||||||||||||||  ||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  31497319 caaaagaggaactttgtaaacctcatccactccatactctttcagtatatgctcgtctctagaaatgataat 31497248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 31490070 - 31489989
Alignment:
Q  175 attcaaaagtggaactttgtaaactacatccactccatactctttcaatatatgctcatctctagaaatgataataattcta 256  Q
    |||||| ||||||||| ||||||||||||| ||||||||||||||||| ||||| ||||||| |||||| ||||| ||||||    
T  31490070 attcaagagtggaactctgtaaactacatcaactccatactctttcaagatatgttcatctccagaaattataatgattcta 31489989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 31502491 - 31502420
Alignment:
Q  178 caaaagtggaactttgtaaactacatccactccatactctttcaatatatgctcatctctagaaatgataat 249  Q
    |||||| ||||||||||||||| ||||||||||| |   ||||||||||||||||||||||||||| |||||    
T  31502491 caaaagaggaactttgtaaacttcatccactccaaaaaatttcaatatatgctcatctctagaaattataat 31502420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 31527936 - 31528166
Alignment:
Q  23 cgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataattcagtatctcatctgccaaattttgataatcactcataataa 122  Q
    |||||||||||||||||||||||| || |||| ||||| ||||  || ||||||||||| |||||||||| | |||| |  | ||||| ||||| ||||     
T  31527936 cgaccaaacaaaaatgagcccaatgctttaatcgctagtggtaagccattagcataatttagtatctcatataccaactcgtcataattactcaaaata- 31528034  T
Q  123 ttttctcaactttgaaagcttttcgacaaaataacatgtgagactcggcctgattcaaaagtggaactttgtaaactacatccactccatactctttcaa 222  Q
      || |||  ||||||||||| | | ||||||||     |||| |  |  |||||||| |||||||||||| ||||||||||||||||||||   |||||    
T  31528035 --ttatcacgtttgaaagcttgttggcaaaataattgaagagaattagtttgattcaagagtggaactttgaaaactacatccactccatacctattcaa 31528132  T
Q  223 tatatgctcatctctagaaatgataataattcta 256  Q
     |||||   |||||| ||||| ||||| ||||||    
T  31528133 gatatgagtatctctcgaaattataatgattcta 31528166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 31477359 - 31477295
Alignment:
Q  185 ggaactttgtaaactacatccactccatactctttcaatatatgctcatctctagaaatgataat 249  Q
    ||||||||||||||| |||| |||||||| |  |||||||||||||||||||||||||| |||||    
T  31477359 ggaactttgtaaacttcatctactccataattcttcaatatatgctcatctctagaaattataat 31477295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 31161332 - 31161413
Alignment:
Q  175 attcaaaagtggaactttgtaaactacatccactccatactctttcaatatatgctcatctctagaaatgataataattcta 256  Q
    |||||| | |||||||||||| || ||||||||  || || ||||||| ||||||||||||||| || | ||||| ||||||    
T  31161332 attcaacaatggaactttgtagacaacatccacaacaaacactttcaagatatgctcatctctaaaagttataatgattcta 31161413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 31477518 - 31477461
Alignment:
Q  23 cgaccaaacaaaaatgagcccaatactgtaattgctagcggtagacctttagcataat 80  Q
    ||||||||||||||||| ||||||||| ||||||| || ||||| || || |||||||    
T  31477518 cgaccaaacaaaaatgaacccaatactttaattgcaagtggtaggccattggcataat 31477461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 255
Target Start/End: Complemental strand, 31483223 - 31483143
Alignment:
Q  175 attcaaaagtggaactttgtaaactacatccactccatactctttcaatatatgctcatctctagaaatgataataattct 255  Q
    |||||| | |||||||||||||| | | |||||||||||||||| ||| |||||  |||||||| |||  ||||| |||||    
T  31483223 attcaagaatggaactttgtaaagtgcgtccactccatactcttccaagatatgagcatctctacaaactataatgattct 31483143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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