View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4206_low_9 (Length: 209)
Name: NF4206_low_9
Description: NF4206
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4206_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 17986457 - 17986290
Alignment:
| Q |
26 |
cacttgtattgagctgcaatttcaagagctctcattgcaccagagagttcagcatgataagcattacctaatccagaattttctgcaaaacaaagaagga |
125 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17986457 |
cactggtattgagctgcaatttcaagagctctcattgcaccagagagttcagcatgataagcattacctaatccagaattttctgcaaaacaaagaagga |
17986358 |
T |
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| Q |
126 |
attttgcttgactgtctctgaaaatccctccacaagctgaatgattgtttgtagatgagccatctgtg |
193 |
Q |
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| T |
17986357 |
attttgcttgactgtctctgaaaatccctccacaagctgaatgattgtttgtagatgagccatctgtg |
17986290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 15606495 - 15606574
Alignment:
| Q |
41 |
gcaatttcaagagctctcattgcaccagagagttcagcatgataagcattacctaatccagaattttctgcaaaacaaag |
120 |
Q |
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| T |
15606495 |
gcaatttcaattgctctcattgcacctgaaagttcagcatgataagcgctacctattccagtgttctctgcaaagcaaag |
15606574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 19131726 - 19131644
Alignment:
| Q |
41 |
gcaatttcaagagctctcattgcaccagagagttcagcatgataagcattacctaatccagaattttctgcaaaacaaagaag |
123 |
Q |
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| T |
19131726 |
gcaatttcaattgctctcattgctccagaaagttcagcatgataagcacttccaataccagtgttttctgcaaagcaaagaag |
19131644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 20749189 - 20749347
Alignment:
| Q |
34 |
ttgagctgcaatttcaagagctctcattgcaccagagagttcagcatgataagcattacctaatccagaattttctgcaaaacaaagaaggaattttgct |
133 |
Q |
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| T |
20749189 |
ttgagctgcgatttcgagagctctcatagccccagagagttcagcatgataagcattacctaatccataattttctgcaaaacaaagaaggaattttgct |
20749288 |
T |
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| Q |
134 |
tgactgtctctgaaaatccctccacaagctgaatgattgtttgtagatgagccatctgt |
192 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
20749289 |
tgactgtctctgaaaatccctccacaagttgaatgattgtttttagatgagccatctgt |
20749347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 8775035 - 8775150
Alignment:
| Q |
46 |
ttcaagagctctcattgcaccagagagttcagcatgataagcattacctaatccagaattttctgcaaaacaaagaaggaattttgcttgactgtctctg |
145 |
Q |
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||||| |||||||||||||||||| | ||||| ||||| |||| ||| |||| |||||| |||||||||||||||||||| |||||| | |||| | |
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| T |
8775035 |
ttcaatagctctcattgcaccagataactcagcttgatagtcatttcctggaccagtattttcagcaaaacaaagaaggaatttggcttgattatctcgg |
8775134 |
T |
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| Q |
146 |
aaaatccctccacaag |
161 |
Q |
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|| || |||||||||| |
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| T |
8775135 |
aatattcctccacaag |
8775150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Original strand, 7803688 - 7803767
Alignment:
| Q |
41 |
gcaatttcaagagctctcattgcaccagagagttcagcatgataagcattacctaatccagaattttctgcaaaacaaag |
120 |
Q |
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|||||||||| |||||||||||||| || ||||||||||||||||| |||||| ||||| || |||||||| ||||| |
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| T |
7803688 |
gcaatttcaattgctctcattgcacctgaaagttcagcatgataagcgctacctattccagtgttctctgcaaagcaaag |
7803767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 22517891 - 22517970
Alignment:
| Q |
52 |
agctctcattgcaccagagagttcagcatgataagcattacctaatccagaattttctgcaaaacaaagaaggaattttg |
131 |
Q |
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||||||||||||||| ||| |||| |||| |||||| | || ||| || |||||||||||||||||||| |||||||| |
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| T |
22517891 |
agctctcattgcacctgagggttctgcattgtaagcacttccaaattaagtattttctgcaaaacaaagaatgaattttg |
22517970 |
T |
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