View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4207_high_1 (Length: 469)

Name: NF4207_high_1
Description: NF4207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4207_high_1
NF4207_high_1
[»] chr2 (7 HSPs)
chr2 (54-455)||(32706083-32706479)
chr2 (24-125)||(32718272-32718373)
chr2 (24-125)||(32724677-32724778)
chr2 (270-347)||(32718574-32718651)
chr2 (270-347)||(32724979-32725056)
chr2 (139-192)||(32718419-32718472)
chr2 (139-192)||(32724824-32724877)
[»] chr6 (2 HSPs)
chr6 (268-352)||(14903439-14903523)
chr6 (49-125)||(14903644-14903720)
[»] chr5 (6 HSPs)
chr5 (268-352)||(2999658-2999748)
chr5 (21-97)||(2999385-2999461)
chr5 (412-455)||(3000932-3000975)
chr5 (305-352)||(7432420-7432467)
chr5 (127-192)||(2999481-2999553)
chr5 (368-414)||(3000803-3000849)
[»] chr8 (1 HSPs)
chr8 (306-350)||(39851723-39851767)
[»] chr4 (1 HSPs)
chr4 (306-350)||(44476235-44476279)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 54 - 455
Target Start/End: Original strand, 32706083 - 32706479
Alignment:
Q  54 ttttggagtcagctttcttgtattcctctgtgtagacgttttatatcaagttgaactctattctaaaatttcgattcttaaaatatctcaccttgttgag 153  Q
    |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  32706083 ttttagagtcagctttcttttattcctctgtgtagacgttttatatcaagttgaactctattctaaaattacaattcttaaaatatctcaccttgttgag 32706182  T
Q  154 tgttagtgttgatagacatcttattcagattttgtttagctcattgcaagatagtttaagattgtcggtgtttaatgttttacctacatatcaatcattg 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32706183 tgttagtgttgatagacatcttattcagattttgtttagctcattgcatgatagtttaagattgtcggtgtttaatgttt-acctacatatcaatcattg 32706281  T
Q  254 agtgagtggtattcttgtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcattgaatag 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32706282 agtgagtggtattcttgtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcattgaatag 32706381  T
Q  354 aagaagagaagcgtgtttccaacactagttatacaagaagagaagcgtgttcgctttgtgggtggtgagttgcgtgttgtagtgtttattttttatttga 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  32706382 aagaagagaagcgtgtttccaacactagttatacaagaagagaagcgtgttcgcttt----gtggtgagttgcgtgttgtagtgtttattttttatttga 32706477  T

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Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 32718272 - 32718373
Alignment:
Q  24 tgtagagctaggattttagtagccggttggttttggagtcagctttcttgtattcctctgtgtagacgttttatatcaagttgaactctattctaaaatt 123  Q
    ||||||||||||| || |||||| ||||| |||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32718272 tgtagagctaggagttcagtagctggttgtttttggagtctgcttttctgtattcctctgtgtagacgttttacatcaagttgaactctattctaaaatt 32718371  T
Q  124 tc 125  Q
    ||    
T  32718372 tc 32718373  T

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Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 32724677 - 32724778
Alignment:
Q  24 tgtagagctaggattttagtagccggttggttttggagtcagctttcttgtattcctctgtgtagacgttttatatcaagttgaactctattctaaaatt 123  Q
    ||||||||||||| || |||||| ||||| |||||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32724677 tgtagagctaggagttcagtagctggttgtttttggagtctgcttttctgtattcctctgtgtagacgttttacatcaagttgaactctattctaaaatt 32724776  T
Q  124 tc 125  Q
    ||    
T  32724777 tc 32724778  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 32718574 - 32718651
Alignment:
Q  270 gtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcatt 347  Q
    |||||||||||| ||||||| | ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  32718574 gtgcatgagatcgttatttagtgaactcagagagctggcttgatgcaatttctaccttgattacatatttaaatcatt 32718651  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 32724979 - 32725056
Alignment:
Q  270 gtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcatt 347  Q
    |||||||||||| ||||||| | ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  32724979 gtgcatgagatcgttatttagtgaactcagagagctggcttgatgcaatttctaccttgattacatatttaaatcatt 32725056  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 32718419 - 32718472
Alignment:
Q  139 tctcaccttgttgagtgttagtgttgatagacatcttattcagattttgtttag 192  Q
    |||||||||||| |||||||||| |||||||||||||||||| |||||||||||    
T  32718419 tctcaccttgtttagtgttagtggtgatagacatcttattcacattttgtttag 32718472  T

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Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 32724824 - 32724877
Alignment:
Q  139 tctcaccttgttgagtgttagtgttgatagacatcttattcagattttgtttag 192  Q
    |||||||||||| |||||||||| |||||||||||||||||| |||||||||||    
T  32724824 tctcaccttgtttagtgttagtggtgatagacatcttattcacattttgtttag 32724877  T

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Target: chr6 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 268 - 352
Target Start/End: Complemental strand, 14903523 - 14903439
Alignment:
Q  268 ttgtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcattgaata 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14903523 ttgtgcatgagatcattatttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcactgaata 14903439  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 125
Target Start/End: Complemental strand, 14903720 - 14903644
Alignment:
Q  49 gttggttttggagtcagctttcttgtattcctctgtgtagacgttttatatcaagttgaactctattctaaaatttc 125  Q
    |||||||||||||||| ||||||||||||||||| ||||||   |||||||||||||||||| ||||||||||||||    
T  14903720 gttggttttggagtcaactttcttgtattcctctatgtagattatttatatcaagttgaactttattctaaaatttc 14903644  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 2999658 - 2999748
Alignment:
Q  268 ttgtgcatgagatcattattt------atttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcattgaata 352  Q
    |||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2999658 ttgtgcatgagatcattattttattttatttaactcagagagctagcttgatgcaatttctagcttcattacatatttaaatcattgaata 2999748  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 2999385 - 2999461
Alignment:
Q  21 agatgtagagctaggattttagtagccggttggttttggagtcagctttcttgtattcctctgtgtagacgttttat 97  Q
    ||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2999385 agatgtagagctacgagtttagtagtcagttggttttggagtcagctttcttgtattcctctgtgtagacgttttat 2999461  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 412 - 455
Target Start/End: Original strand, 3000932 - 3000975
Alignment:
Q  412 tgggtggtgagttgcgtgttgtagtgtttattttttatttgatg 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3000932 tgggtggtgagttgcgtgttgtagtgtttattttttatttgatg 3000975  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 7432420 - 7432467
Alignment:
Q  305 tagcttgatgcaatttctagcttcattacatatttaaatcattgaata 352  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||    
T  7432420 tagcttgatgcaatttgtagcttcattacatattgaaatcattgaata 7432467  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 2999481 - 2999553
Alignment:
Q  127 attcttaaaatatctcaccttgttgagtgttagtgttg-------atagacatcttattcagattttgtttag 192  Q
    ||||| ||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||||||    
T  2999481 attctcaaaatatctcaccttgttgagtgttagtggtgaatggtaatagacatcttattcagattttgtttag 2999553  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 414
Target Start/End: Original strand, 3000803 - 3000849
Alignment:
Q  368 gtttccaacactagttatacaagaagagaagcgtgttcgctttgtgg 414  Q
    |||||||  |||||||||||||||||||||||| |||||||||||||    
T  3000803 gtttccagaactagttatacaagaagagaagcgcgttcgctttgtgg 3000849  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 39851723 - 39851767
Alignment:
Q  306 agcttgatgcaatttctagcttcattacatatttaaatcattgaa 350  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||||    
T  39851723 agcttgatgtaatttttagcttcattacatagttaaatcattgaa 39851767  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 44476235 - 44476279
Alignment:
Q  306 agcttgatgcaatttctagcttcattacatatttaaatcattgaa 350  Q
    |||| |||||||||| ||||| ||||||||| |||||||||||||    
T  44476235 agctggatgcaatttgtagctgcattacatagttaaatcattgaa 44476279  T

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