View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4207_low_1 (Length: 480)
Name: NF4207_low_1
Description: NF4207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4207_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 28 - 465
Target Start/End: Original strand, 5178353 - 5178790
Alignment:
| Q |
28 |
caagagtgagagacaaatattgctacaaaatgcacaacttttctaaggagaatagaatcaagctaataagattgtttgaccaaaaatatacacatataaa |
127 |
Q |
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| T |
5178353 |
caagagtgagagacaaatattgctacaaaatgcacaacttttctaaggagaatagaatcaaggtaataagattgtttgaccaaaaatatacacatataaa |
5178452 |
T |
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| Q |
128 |
agaggaaataatagttgctttaattcttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacc |
227 |
Q |
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| T |
5178453 |
agaggaaataatagttgctttaatttttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacc |
5178552 |
T |
|
| Q |
228 |
tgtccacctatgtctgataaaccaacattcattataaatcaagcaacaaaaaactcgaaagaagatgaacagttttaaattgtagtctgcaatataaagg |
327 |
Q |
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| T |
5178553 |
tgtccacctatgtctgataaaccaacattcattataaatcaagcaacaaaaaactcgaaagaagatgaacagttttaaattgtagtccgcaatataaagg |
5178652 |
T |
|
| Q |
328 |
attttaaggtctgcgatctgcgtcataactgcaaattcgattgtatcgagtaaannnnnnnacaatataaaggtttatagaatatactcaactgcaattt |
427 |
Q |
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| T |
5178653 |
attttaaggtctgcgatctgcgtcataactgcaaattcgattgtatcgagtaaatttttttacaatataaaggtttatagaatatactcaactgcaattt |
5178752 |
T |
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| Q |
428 |
aaaatcgtgacataaatctatcgaagtcgcgaacatgg |
465 |
Q |
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| T |
5178753 |
aaaatcgtgacataaatctgtcgaagtcgcgaacatgg |
5178790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 13683499 - 13683566
Alignment:
| Q |
172 |
ctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacctgtccacctatg |
239 |
Q |
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| T |
13683499 |
ctagcttgaccttctcttctacagctgttatcccatagatgggcttcatatcttcctgtccatctatg |
13683566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 249
Target Start/End: Complemental strand, 40189561 - 40189462
Alignment:
| Q |
150 |
attcttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacctgtccacctatgtctgataaac |
249 |
Q |
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| T |
40189561 |
attcttaccttgtcttccttttctgctttggccttctttcttgcaactgttgtcccataaatgagcttcatatctcccagtccacctatgcctaataaac |
40189462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 28590727 - 28590767
Alignment:
| Q |
193 |
cagctgttatcccatagatgagcttcatatctacctgtcca |
233 |
Q |
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| T |
28590727 |
cagctgttatcccatagatgtgcttcaaatctacctgtcca |
28590767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 196 - 246
Target Start/End: Original strand, 4847017 - 4847067
Alignment:
| Q |
196 |
ctgttatcccatagatgagcttcatatctacctgtccacctatgtctgata |
246 |
Q |
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| T |
4847017 |
ctgttatcccataaatgtgcttcatatctaccggtccatctatgcctgata |
4847067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 30619947 - 30620032
Alignment:
| Q |
154 |
ttaccttgctttccttttctagcttggccctcttttttacagctgttatcccatagatgagcttcatatctacctgtccacctatg |
239 |
Q |
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||||||||| ||||||| | || || |||||| || |||| || |||||||| || |||||||||||||| |||||||| ||||| |
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| T |
30619947 |
ttaccttgccttcctttgcgagtctgcccctctcttctacaactattatcccaaaggtgagcttcatatctccctgtccatctatg |
30620032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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