View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4207_low_3 (Length: 353)
Name: NF4207_low_3
Description: NF4207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4207_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 344
Target Start/End: Complemental strand, 39949067 - 39948741
Alignment:
| Q |
20 |
tgcagaagatatattttgtgacattgtcatttggtgtatgttaacttgagttgacgaggaagctggtatttgttgtgacaatatttgtagccctttgagc |
119 |
Q |
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| T |
39949067 |
tgcagaagatatattttgtgacattgtcatttggtgtatgttaacttgagttgacgaggaagctggtatttgttgtgacaatatttgtagccctttgagc |
39948968 |
T |
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| Q |
120 |
tccttctttagctaacatatgttcgatcgtaagactaataaaatctcttgaactgtcatccagcatgtccaatggtgttaaacccatgttgttcatatta |
219 |
Q |
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| T |
39948967 |
tccttctttagctaacatatgttcgatcgtaagactaataaaatctcttgaactgtgatccagcatgtccaatggtgttaaacccatgttgttcaaatta |
39948868 |
T |
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| Q |
220 |
tttatagctgtccaatggtgttaaataatttggagattgttctttaga--gatatttaagaaaaccataaactgtggttgaggaaacattcaagttattt |
317 |
Q |
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| T |
39948867 |
tttatagctgtccaatggtgttaaataatttggagattgttctttagagcgatatttaagaaaaccataaactgtggttgaggaaacattcaagttattt |
39948768 |
T |
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| Q |
318 |
tagaaaaatggcaagtagtaccctttg |
344 |
Q |
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| T |
39948767 |
tagaaaaatggcaagtagtaccttttg |
39948741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 311
Target Start/End: Complemental strand, 33220378 - 33220309
Alignment:
| Q |
242 |
aaataatttggagattgttctttagagatatttaagaaaaccataaactgtggttgaggaaacattcaag |
311 |
Q |
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||||||| || |||| |||||||||||| ||| |||||| |||||||| ||||||| ||||||||||| |
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| T |
33220378 |
aaataatgtgaagatagttctttagagacttttgagaaaatcataaactatggttgaaaaaacattcaag |
33220309 |
T |
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