View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4207_low_7 (Length: 314)

Name: NF4207_low_7
Description: NF4207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4207_low_7
NF4207_low_7
[»] chr4 (4 HSPs)
chr4 (12-169)||(46074568-46074724)
chr4 (227-310)||(46074426-46074509)
chr4 (101-155)||(28031806-28031860)
chr4 (102-158)||(7248327-7248383)
[»] chr6 (3 HSPs)
chr6 (101-146)||(21296761-21296806)
chr6 (103-143)||(9581972-9582012)
chr6 (103-143)||(30579865-30579905)
[»] chr5 (5 HSPs)
chr5 (103-160)||(6345028-6345084)
chr5 (101-143)||(34191439-34191481)
chr5 (101-143)||(35270694-35270736)
chr5 (100-128)||(2772054-2772082)
chr5 (103-139)||(8885256-8885292)
[»] chr8 (1 HSPs)
chr8 (91-143)||(8461839-8461891)
[»] chr7 (5 HSPs)
chr7 (102-158)||(43681004-43681060)
chr7 (101-156)||(44406869-44406924)
chr7 (18-64)||(45501732-45501778)
chr7 (102-143)||(35103502-35103543)
chr7 (19-64)||(45502397-45502442)
[»] chr2 (3 HSPs)
chr2 (91-125)||(3752778-3752812)
chr2 (82-143)||(36474768-36474829)
chr2 (102-146)||(22558980-22559024)
[»] chr1 (3 HSPs)
chr1 (101-139)||(33153630-33153668)
chr1 (101-143)||(50040362-50040404)
chr1 (101-130)||(32007610-32007639)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 169
Target Start/End: Complemental strand, 46074724 - 46074568
Alignment:
Q  12 acagatgactaaaatggtggttttgaaaatgaggggactaaaatttcgattaannnnnnnnnnnnngtaatggctggaatttgatctcaggaccttgtat 111  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||             ||| ||| |||| ||||||||| ||||||| |||    
T  46074724 acagatgactaaaatggtggttttgtaaatgaggggactaaaatttcgattaatttttttttctt-gtagtggttggagtttgatctcgggaccttatat 46074626  T
Q  112 attttatgcattgtcccaagcaaatgagctaaactaacaatgacaatttcgattaggt 169  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  46074625 attttatgcactgtcctaagcaaatgagctaaactaacaatgacaatttcgattaggt 46074568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 227 - 310
Target Start/End: Complemental strand, 46074509 - 46074426
Alignment:
Q  227 acagttttcctcttgattgatctcagccattgatttttaaactaacagatcgaacgattgtaaattgaggttgatgatgtccat 310  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46074509 acagttttccttttgattgatctcagccattgatttttaaactaacagatcgaacgattgtaaattgaggttgatgatgaccat 46074426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 155
Target Start/End: Complemental strand, 28031860 - 28031806
Alignment:
Q  101 ggaccttgtatattttatgcattgtcccaagcaaatgagctaaactaacaatgac 155  Q
    |||||||| |||||||||||||||| |||| ||| ||||||||||| ||||||||    
T  28031860 ggaccttgcatattttatgcattgttccaaccaactgagctaaactcacaatgac 28031806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Complemental strand, 7248383 - 7248327
Alignment:
Q  102 gaccttgtatattttatgcattgtcccaagcaaatgagctaaactaacaatgacaat 158  Q
    ||||||| ||||||||||||||||||||| ||| |||| |||||| || ||||||||    
T  7248383 gaccttgcatattttatgcattgtcccaatcaactgagttaaactcacgatgacaat 7248327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 146
Target Start/End: Complemental strand, 21296806 - 21296761
Alignment:
Q  101 ggaccttgtatattttatgcattgtcccaagcaaatgagctaaact 146  Q
    |||||||| ||||||||||||||||||||| ||| |||||||||||    
T  21296806 ggaccttgcatattttatgcattgtcccaaccaactgagctaaact 21296761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 9582012 - 9581972
Alignment:
Q  103 accttgtatattttatgcattgtcccaagcaaatgagctaa 143  Q
    ||||||||||||||||||||||| |||| ||| ||||||||    
T  9582012 accttgtatattttatgcattgttccaaccaactgagctaa 9581972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 30579905 - 30579865
Alignment:
Q  103 accttgtatattttatgcattgtcccaagcaaatgagctaa 143  Q
    |||||| ||||||||||||||||||||| ||| ||||||||    
T  30579905 accttgcatattttatgcattgtcccaaccaactgagctaa 30579865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 6345084 - 6345028
Alignment:
Q  103 accttgtatattttatgcattgtcccaagcaaatgagctaaactaacaatgacaattt 160  Q
    ||||||||||||||||||||||| |||| ||| |||||||| || |||||||||||||    
T  6345084 accttgtatattttatgcattgt-ccaaccaactgagctaagctcacaatgacaattt 6345028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 34191481 - 34191439
Alignment:
Q  101 ggaccttgtatattttatgcattgtcccaagcaaatgagctaa 143  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||    
T  34191481 ggaccttgcatattttatgcattgtcccaaccaactgagctaa 34191439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 35270694 - 35270736
Alignment:
Q  101 ggaccttgtatattttatgcattgtcccaagcaaatgagctaa 143  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||    
T  35270694 ggaccttgcatattttatgcattgtcccaaccaactgagctaa 35270736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 128
Target Start/End: Complemental strand, 2772082 - 2772054
Alignment:
Q  100 aggaccttgtatattttatgcattgtccc 128  Q
    |||||||||||||||||||||||||||||    
T  2772082 aggaccttgtatattttatgcattgtccc 2772054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 8885256 - 8885292
Alignment:
Q  103 accttgtatattttatgcattgtcccaagcaaatgag 139  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  8885256 accttgcatattttatgcattgtcccaatcaaatgag 8885292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 143
Target Start/End: Original strand, 8461839 - 8461891
Alignment:
Q  91 tttgatctcaggaccttgtatattttatgcattgtcccaagcaaatgagctaa 143  Q
    ||||| ||| |||||||| ||||||||||||||||||||| ||| ||||||||    
T  8461839 tttgaactccggaccttgcatattttatgcattgtcccaaccaactgagctaa 8461891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 43681004 - 43681060
Alignment:
Q  102 gaccttgtatattttatgcattgtcccaagcaaatgagctaaactaacaatgacaat 158  Q
    ||||||| ||||||||||||||||||||| ||| |||| |||||| || ||||||||    
T  43681004 gaccttgcatattttatgcattgtcccaatcaactgagttaaactcacgatgacaat 43681060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 44406869 - 44406924
Alignment:
Q  101 ggaccttgtatattttatgcattgtcccaagcaaatgagctaaactaacaatgaca 156  Q
    |||||||| ||||||||||||||||||||| ||| |||||||| || |||| ||||    
T  44406869 ggaccttgcatattttatgcattgtcccaaccaactgagctaagctcacaaagaca 44406924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 45501778 - 45501732
Alignment:
Q  18 gactaaaatggtggttttgaaaatgaggggactaaaatttcgattaa 64  Q
    ||||||||| |||||||||||||| |||| | |||||||||||||||    
T  45501778 gactaaaatagtggttttgaaaataagggtattaaaatttcgattaa 45501732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 35103543 - 35103502
Alignment:
Q  102 gaccttgtatattttatgcattgtcccaagcaaatgagctaa 143  Q
    ||||||| ||||||||||||||||||||| ||| ||||||||    
T  35103543 gaccttgcatattttatgcattgtcccaaccaactgagctaa 35103502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 45502397 - 45502442
Alignment:
Q  19 actaaaatggtggttttgaaaatgaggggactaaaatttcgattaa 64  Q
    |||||||||||||||||||||||  | ||| |||||||||||||||    
T  45502397 actaaaatggtggttttgaaaataggaggattaaaatttcgattaa 45502442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 3752778 - 3752812
Alignment:
Q  91 tttgatctcaggaccttgtatattttatgcattgt 125  Q
    ||||||||| |||||||||||||||||||||||||    
T  3752778 tttgatctctggaccttgtatattttatgcattgt 3752812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 36474829 - 36474768
Alignment:
Q  82 tggctggaatttgatctcaggaccttgtatattttatgcattgtcccaagcaaatgagctaa 143  Q
    |||| ||||||||| | | |||||||| ||||||||||||||||||| | ||| ||||||||    
T  36474829 tggccggaatttgaaccccggaccttgcatattttatgcattgtccctatcaactgagctaa 36474768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 22559024 - 22558980
Alignment:
Q  102 gaccttgtatattttatgcattgtcccaagcaaatgagctaaact 146  Q
    |||||||||||||||||||||||||| || ||| |||| ||||||    
T  22559024 gaccttgtatattttatgcattgtccaaaccaactgagttaaact 22558980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 139
Target Start/End: Complemental strand, 33153668 - 33153630
Alignment:
Q  101 ggaccttgtatattttatgcattgtcccaagcaaatgag 139  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  33153668 ggaccttgtatattttatgcattgtcccaaccaactgag 33153630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 50040404 - 50040362
Alignment:
Q  101 ggaccttgtatattttatgcattgtcccaagcaaatgagctaa 143  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||    
T  50040404 ggaccttgcatattttatgcattgtcccaaccaactgagctaa 50040362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 130
Target Start/End: Original strand, 32007610 - 32007639
Alignment:
Q  101 ggaccttgtatattttatgcattgtcccaa 130  Q
    ||||||||||||||||||||||||||||||    
T  32007610 ggaccttgtatattttatgcattgtcccaa 32007639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University