View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4208_high_2 (Length: 343)
Name: NF4208_high_2
Description: NF4208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4208_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 333
Target Start/End: Original strand, 19077584 - 19077901
Alignment:
| Q |
17 |
aagttctataaataatggagaatcatttccgataaaatgagtatggg-aaaattattcaagaacttttccttgtccttgctaagtgtgaattacaaccaa |
115 |
Q |
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| T |
19077584 |
aagttctataaataatggagaatcctttccgataaaatgagtatggggaaaattattcaagaacttttccttgtccttgctaagcgtgaattacaaccaa |
19077683 |
T |
|
| Q |
116 |
tgtgatagaaattcacgtttagataatgactctttatagtcagatgaatcagttaatttttggttctaaacatcaattacaaatattattataattcaag |
215 |
Q |
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| T |
19077684 |
tgtgatagaaattcacgtttagataataactctttatagtcagatgaatcagttaatttttggttctaaacatgaattacaaatattattataattcaag |
19077783 |
T |
|
| Q |
216 |
tttagcaagaacaagggaaattccatgaatacttatctacatacccttttcaccggcaaggattcctccactagttatagaacatcctgctcaaatccca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19077784 |
tttagcaagaacaagggaaattccatgaatacttatctacataaccttttcaccggcaaggattcctccactagttatagaacatcctgctcaaatccca |
19077883 |
T |
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| Q |
316 |
tggtaaccattccctttg |
333 |
Q |
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||||||||||||||||| |
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| T |
19077884 |
cggtaaccattccctttg |
19077901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 326
Target Start/End: Original strand, 19079309 - 19079619
Alignment:
| Q |
17 |
aagttctataaataatggagaatcatttccgataaaatgagtatggg-aaaattattcaagaacttttccttgtccttgctaagtgtgaattacaaccaa |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||| || | ||||||||||||||| ||||||||||||||| |
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| T |
19079309 |
aagttctataaataatggagaatcttttccgataaaatgagtatggggaaaataattcaagaatttgtgcttgtccttgctaagcgtgaattacaaccaa |
19079408 |
T |
|
| Q |
116 |
tgtgatagaaattcacgtttagataatgactctttatagtcagatgaatcagttaatttttggttctaaacatcaattacaaatattattataattcaag |
215 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| |||| ||||||||||||||| |
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| T |
19079409 |
tgtgatagaaattcacgtttagataatgactctctatagtcagatgaatcagttcatttttggttctaaacatgaattataaatgttattataattcaag |
19079508 |
T |
|
| Q |
216 |
tttagcaagaacaagggaaattccatgaatacttatctacatacccttttcaccggcaaggattcctccactagttatagaacatcctgctcaaatccca |
315 |
Q |
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|||||||| ||||| | |||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| || |||||||||| || |
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| T |
19079509 |
tttagcaacaacaaagaaaattccagaaatacatatctacatacccttttcaccggctaggattcctccactagtgatagaacttcttgctcaaatctca |
19079608 |
T |
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| Q |
316 |
tggtaaccatt |
326 |
Q |
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||||||||||| |
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| T |
19079609 |
tggtaaccatt |
19079619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 333
Target Start/End: Complemental strand, 17408989 - 17408869
Alignment:
| Q |
215 |
gtttagcaagaacaagggaaattccatgaatacttatctacatacccttttcaccggcaaggattcctccactagttataga-acatcctgc-tcaaatc |
312 |
Q |
| |
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|||||| ||| ||||||| |||| | |||||| || || ||||||| ||||| | |||||||||||||| || |||| ||| | |||||| ||||| | |
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| T |
17408989 |
gtttagaaaggacaagggcaattgcttgaatagttttccccatacccatttcatcagcaaggattcctcctctggttacagattcctcctgcttcaaagc |
17408890 |
T |
|
| Q |
313 |
ccatggtaaccattccctttg |
333 |
Q |
| |
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||||| ||||||||||||||| |
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| T |
17408889 |
ccatgctaaccattccctttg |
17408869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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