View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4208_low_1 (Length: 449)

Name: NF4208_low_1
Description: NF4208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4208_low_1
NF4208_low_1
[»] chr4 (20 HSPs)
chr4 (10-449)||(24271402-24271852)
chr4 (53-229)||(27026572-27026748)
chr4 (53-229)||(14572048-14572221)
chr4 (53-229)||(4127783-4127960)
chr4 (113-229)||(12691953-12692070)
chr4 (113-229)||(44471279-44471396)
chr4 (113-226)||(35871700-35871813)
chr4 (113-229)||(49998705-49998822)
chr4 (53-229)||(1645643-1645820)
chr4 (113-229)||(24628931-24629048)
chr4 (113-229)||(50814779-50814896)
chr4 (112-229)||(4185784-4185902)
chr4 (111-225)||(26200245-26200352)
chr4 (160-229)||(27029346-27029416)
chr4 (160-229)||(4127438-4127508)
chr4 (160-229)||(50398539-50398609)
chr4 (120-220)||(15306052-15306153)
chr4 (254-287)||(24629538-24629571)
chr4 (160-229)||(29628669-29628738)
chr4 (235-287)||(29628755-29628805)
[»] scaffold0005 (1 HSPs)
scaffold0005 (53-229)||(245155-245328)
[»] chr2 (21 HSPs)
chr2 (70-215)||(30961800-30961946)
chr2 (53-229)||(30966759-30966936)
chr2 (113-229)||(33771070-33771187)
chr2 (100-229)||(8256595-8256725)
chr2 (113-225)||(11388260-11388373)
chr2 (160-229)||(1912594-1912663)
chr2 (53-229)||(24818395-24818571)
chr2 (53-229)||(30963163-30963340)
chr2 (113-229)||(41754358-41754475)
chr2 (160-229)||(33174572-33174642)
chr2 (113-229)||(5399777-5399894)
chr2 (113-225)||(11394607-11394719)
chr2 (113-229)||(25337957-25338074)
chr2 (235-312)||(1953133-1953207)
chr2 (160-229)||(18098885-18098955)
chr2 (69-187)||(32377632-32377750)
chr2 (235-287)||(1912527-1912577)
chr2 (235-287)||(18098972-18099022)
chr2 (235-287)||(25338091-25338141)
chr2 (121-229)||(29804751-29804860)
chr2 (235-287)||(33174960-33175010)
[»] chr8 (22 HSPs)
chr8 (53-229)||(27022239-27022415)
chr8 (53-229)||(22548449-22548626)
chr8 (113-229)||(12827214-12827331)
chr8 (113-229)||(22548955-22549072)
chr8 (113-229)||(25148036-25148153)
chr8 (114-229)||(25144841-25144957)
chr8 (113-229)||(10844575-10844692)
chr8 (113-229)||(22026448-22026565)
chr8 (113-229)||(34308439-34308556)
chr8 (113-223)||(31283612-31283722)
chr8 (161-229)||(8080350-8080419)
chr8 (53-137)||(15567909-15567993)
chr8 (59-229)||(2044127-2044298)
chr8 (59-229)||(33852164-33852335)
chr8 (91-145)||(6466860-6466914)
chr8 (160-229)||(10844952-10845022)
chr8 (116-229)||(27925968-27926081)
chr8 (113-202)||(34308895-34308985)
chr8 (235-287)||(2044060-2044110)
chr8 (101-229)||(28453407-28453536)
chr8 (113-229)||(41659065-41659182)
chr8 (53-229)||(41913039-41913216)
[»] chr3 (31 HSPs)
chr3 (53-229)||(32386634-32386811)
chr3 (110-229)||(29224393-29224513)
chr3 (113-229)||(31284236-31284353)
chr3 (113-229)||(13150514-13150631)
chr3 (113-229)||(50347815-50347932)
chr3 (120-229)||(28561815-28561925)
chr3 (235-340)||(39640887-39640989)
chr3 (113-229)||(11179994-11180111)
chr3 (113-229)||(32227181-32227298)
chr3 (113-229)||(32227569-32227686)
chr3 (83-170)||(3899929-3900016)
chr3 (160-229)||(25230712-25230782)
chr3 (160-229)||(25238299-25238369)
chr3 (160-229)||(25239084-25239154)
chr3 (113-229)||(14820223-14820340)
chr3 (113-229)||(16811450-16811567)
chr3 (113-229)||(27187290-27187407)
chr3 (161-229)||(30529756-30529825)
chr3 (53-225)||(14814022-14814195)
chr3 (160-229)||(25230255-25230325)
chr3 (160-229)||(25237842-25237912)
chr3 (160-229)||(25248180-25248250)
chr3 (253-287)||(32388841-32388875)
chr3 (113-229)||(13150059-13150176)
chr3 (235-287)||(14813951-14814001)
chr3 (113-229)||(20885077-20885194)
chr3 (235-287)||(25230342-25230392)
chr3 (235-287)||(25237929-25237979)
chr3 (235-287)||(30529689-30529739)
chr3 (235-287)||(41472303-41472353)
chr3 (113-229)||(41472369-41472486)
[»] chr5 (25 HSPs)
chr5 (70-225)||(18750113-18750269)
chr5 (53-228)||(34371682-34371858)
chr5 (113-229)||(189137-189254)
chr5 (53-228)||(2474475-2474651)
chr5 (113-229)||(2193885-2194002)
chr5 (113-229)||(2474028-2474145)
chr5 (113-229)||(8641994-8642111)
chr5 (60-229)||(24182153-24182322)
chr5 (19-229)||(17445320-17445532)
chr5 (69-226)||(3886973-3887131)
chr5 (112-225)||(18304504-18304618)
chr5 (159-229)||(20039481-20039551)
chr5 (53-229)||(10927303-10927480)
chr5 (113-229)||(42788606-42788723)
chr5 (113-228)||(34372138-34372254)
chr5 (160-229)||(1821975-1822045)
chr5 (113-215)||(15512972-15513075)
chr5 (160-229)||(27646842-27646912)
chr5 (160-229)||(39147008-39147078)
chr5 (113-229)||(10926906-10927023)
chr5 (235-287)||(10927040-10927090)
chr5 (235-287)||(10927497-10927547)
chr5 (262-295)||(16370827-16370860)
chr5 (235-287)||(21886240-21886290)
chr5 (235-287)||(22556538-22556588)
[»] scaffold0040 (1 HSPs)
scaffold0040 (21-229)||(2077-2287)
[»] chr7 (28 HSPs)
chr7 (21-229)||(34405458-34405668)
chr7 (113-229)||(2941717-2941834)
chr7 (113-229)||(13125096-13125213)
chr7 (113-229)||(2465802-2465919)
chr7 (113-229)||(9125028-9125145)
chr7 (113-229)||(42515613-42515730)
chr7 (113-215)||(28495937-28496040)
chr7 (110-229)||(20966120-20966240)
chr7 (113-212)||(28495568-28495668)
chr7 (113-215)||(18833369-18833472)
chr7 (100-229)||(5406535-5406665)
chr7 (113-202)||(13122465-13122555)
chr7 (113-229)||(2465993-2466110)
chr7 (53-174)||(43776190-43776311)
chr7 (160-215)||(679899-679955)
chr7 (48-229)||(2189213-2189395)
chr7 (160-229)||(6719081-6719151)
chr7 (160-229)||(6747605-6747675)
chr7 (113-202)||(7646438-7646528)
chr7 (100-174)||(7646540-7646614)
chr7 (160-229)||(26421312-26421382)
chr7 (235-284)||(28495702-28495749)
chr7 (234-287)||(42515094-42515145)
chr7 (160-229)||(42515161-42515231)
chr7 (239-287)||(2611750-2611796)
chr7 (235-287)||(35474215-35474265)
chr7 (113-229)||(36422321-36422437)
chr7 (235-287)||(42515546-42515596)
[»] chr6 (19 HSPs)
chr6 (53-229)||(13492401-13492579)
chr6 (113-225)||(13492862-13492975)
chr6 (113-229)||(20850390-20850507)
chr6 (113-229)||(7911947-7912064)
chr6 (53-229)||(17027431-17027608)
chr6 (112-229)||(17205408-17205525)
chr6 (113-220)||(9352140-9352248)
chr6 (59-229)||(23986223-23986394)
chr6 (113-226)||(7912382-7912496)
chr6 (113-220)||(16520046-16520154)
chr6 (118-229)||(2681181-2681293)
chr6 (114-229)||(13191474-13191590)
chr6 (113-199)||(28780209-28780296)
chr6 (160-229)||(15929651-15929721)
chr6 (235-340)||(32292834-32292937)
chr6 (235-287)||(6331006-6331056)
chr6 (235-287)||(16519970-16520020)
chr6 (235-287)||(20896782-20896832)
chr6 (160-215)||(11062368-11062424)
[»] scaffold0499 (1 HSPs)
scaffold0499 (113-229)||(2011-2128)
[»] scaffold0243 (1 HSPs)
scaffold0243 (113-229)||(1289-1406)
[»] chr1 (28 HSPs)
chr1 (53-229)||(20053980-20054157)
chr1 (113-229)||(20054496-20054613)
chr1 (113-229)||(20054952-20055069)
chr1 (113-229)||(20055408-20055525)
chr1 (113-229)||(20055864-20055981)
chr1 (113-229)||(20056320-20056437)
chr1 (113-229)||(20057223-20057340)
chr1 (113-229)||(20057679-20057796)
chr1 (113-229)||(20845621-20845738)
chr1 (53-229)||(16451833-16452010)
chr1 (53-229)||(16460986-16461163)
chr1 (113-227)||(20056776-20056891)
chr1 (113-229)||(20060300-20060417)
chr1 (53-229)||(35759508-35759685)
chr1 (113-229)||(35760874-35760991)
chr1 (113-229)||(38340975-38341092)
chr1 (113-229)||(51372834-51372951)
chr1 (100-229)||(23180799-23180929)
chr1 (160-287)||(43057530-43057667)
chr1 (160-228)||(43057072-43057141)
chr1 (113-229)||(52250275-52250392)
chr1 (160-229)||(2328384-2328454)
chr1 (160-229)||(2634993-2635063)
chr1 (160-229)||(20061198-20061268)
chr1 (141-229)||(30872938-30873027)
chr1 (235-287)||(35761008-35761058)
chr1 (113-200)||(52250641-52250729)
chr1 (113-200)||(52250978-52251066)
[»] scaffold0322 (1 HSPs)
scaffold0322 (53-229)||(19035-19212)
[»] scaffold0168 (1 HSPs)
scaffold0168 (113-229)||(2811-2928)
[»] scaffold0047 (2 HSPs)
scaffold0047 (160-287)||(18142-18278)
scaffold0047 (53-229)||(17498-17675)
[»] scaffold0022 (2 HSPs)
scaffold0022 (113-229)||(162638-162755)
scaffold0022 (113-199)||(163094-163181)
[»] scaffold0389 (1 HSPs)
scaffold0389 (53-212)||(13433-13593)
[»] scaffold0020 (1 HSPs)
scaffold0020 (115-229)||(107425-107540)
[»] scaffold0024 (1 HSPs)
scaffold0024 (53-229)||(105789-105966)
[»] scaffold0018 (1 HSPs)
scaffold0018 (53-229)||(10369-10545)
[»] scaffold0277 (1 HSPs)
scaffold0277 (113-199)||(14662-14749)
[»] scaffold0137 (1 HSPs)
scaffold0137 (101-171)||(7070-7140)
[»] scaffold0002 (1 HSPs)
scaffold0002 (113-229)||(154826-154943)
[»] scaffold0333 (1 HSPs)
scaffold0333 (113-228)||(5091-5206)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 449
Target Start/End: Original strand, 24271402 - 24271852
Alignment:
Q  10 acatcatcacgacttctaggattgtcgactgacctgagaatcgacacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcg 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  24271402 acatcctcacgacttctaggattgtcgactgacctgagaatcgacacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaacttttc 24271501  T
Q  110 agaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaaaatatgcatcttgttcgtatag 209  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  24271502 agaaggtcacgcatcccaaaattgttctaactcaagcatgtttatttgcagagttcttatggaatgggctacccaaaaaatatgcatcttgttcgtatag 24271601  T
Q  210 gtagtaacaaataattcttagaggt-----------catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtgaattcgattttc 298  Q
    |||||| ||||||||||||| | ||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  24271602 gtagtatcaaataattcttatatgtcttactttaaccatgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtgaattcggttttc 24271701  T
Q  299 ctaaaagatgtcaggagttgtttattgccatgtcttgtgcactggagactactctccgtccttgttagcctcgagtgttactttgatttgttgactatat 398  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||    
T  24271702 ctaaaagatgtcaggagtcgttcattgccatgtcttgtgcactggagactactctccgtccttgttagcctagagtgttactatgatttgttgattatat 24271801  T
Q  399 tgtcaaaattcaatcaattggtatgtgagtctcttgatggaacacgaattt 449  Q
    ||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  24271802 tgtcaaaattcaatcaattggtatgagagtctcttgatggaacaagaattt 24271852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 27026748 - 27026572
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | ||||||||||| ||| ||||||||||| |   |||||| | |||||||||||| |||||||||||||  || ||||||| | ||    
T  27026748 acacgagtcttttcagcgtgttttttcctcagtcacacgctttttggtaaacttcctagaaggtcacccttcccaaaattgcttcaagtcaagcacgctt 27026649  T
Q  153 atttgcagagttcttatggaattggctacccaaaaaatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  | |  |||||||||||||| ||||||| |||||| ||||||||||||  ||||||||||| |||| ||||||||    
T  27026648 aactacgtagttcttatggaatgggctaccaaaaaaagatgcatcttgttgatataggtagtatcaaacaattctta 27026572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 14572048 - 14572221
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || ||||||||||||||||    |||||| | ||||||||||||||| |||||||||||||| ||||||| |       
T  14572048 acacgagtcttttcaccgtgttttgtcctcactcacacgctttccgagaaacttcccagaaggtcacccatctcaaaattgctctaagtcaagcacg--- 14572144  T
Q  153 atttgcagagttcttatggaattggctacccaaaaaatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
     ||||  ||||||||||||  | ||||||| ||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  14572145 ctttgtggagttcttatggtttaggctaccgaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 14572221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 4127783 - 4127960
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || |||||||||||||| |   ||||||||   | |||||||||||||||||||||||||||  |||||| | ||    
T  4127783 acacgagtcttttcagcgtgttttgtcctcactcacacgcttaccggaaaacttttcggtaggtcacccatcccaaaattgctctaagccaagcacgctt 4127882  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  |    |||||||||||||||||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  4127883 aactctgaagttcttatggaattggctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 4127960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 12691953 - 12692070
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  12691953 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 12692052  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  12692053 agtaccaaacaattctta 12692070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 44471279 - 44471396
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  44471279 aggtcacccatcccaaaattgctccaaatcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 44471378  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  44471379 agtaccaaacaattctta 44471396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 35871813 - 35871700
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaaaatatgcatcttgttcgtataggta 212  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| | ||||||||||||  |||||||     
T  35871813 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaaatgcatcttgttgatataggtg 35871714  T
Q  213 gtaacaaataattc 226  Q
    ||| |||| |||||    
T  35871713 gtaccaaacaattc 35871700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 49998822 - 49998705
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || |||| || | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  49998822 aggtcacccatcccaaaattgctccaagtcaaacacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 49998723  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  49998722 agtaccaaacaattctta 49998705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 1645643 - 1645820
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| |||||||||| || |||||| ||||||| | |  |||||| |  | ||||||||||||| || | | ||| || ||||||| | ||    
T  1645643 acacgagtcttttcaacgtgttttgtcctcactcgcacgcttacaaagaaacttcctggtaggtcacccatccaaagactactccaagtcaagcacgctt 1645742  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  ||||||||||||||| ||||||| |||| || ||||||||||||  |||||||| || |||| ||||||||    
T  1645743 aactgtggagttcttatggaatgggctaccaaaaagaagatgcatcttgttgatataggtaataccaaacaattctta 1645820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 24628931 - 24629048
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  ||||||||||||||   |||||  |||| || ||||||||||||  |||||||    
T  24628931 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaacgagctactgaaaagaagatgcatcttgttgatataggt 24629030  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  24629031 agtaccaaacaattctta 24629048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 50814779 - 50814896
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||| ||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  ||||| |    
T  50814779 aggtcatccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatatagat 50814878  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  50814879 agtaccaaacaattctta 50814896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 4185902 - 4185784
Alignment:
Q  112 aaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtatagg 210  Q
    ||||||||| ||||||||||||||| || ||||||||  |||  || ||||||||| | ||||  |||||| |||| || |||||||||||| ||||| |    
T  4185902 aaggtcacctatcccaaaattgctccaagtcaagcatacttaactgtagagttcttgtagaatgagctaccaaaaagaagatgcatcttgttggtatatg 4185803  T
Q  211 tagtaacaaataattctta 229  Q
    | ||| |||| ||||||||    
T  4185802 tggtatcaaacaattctta 4185784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 225
Target Start/End: Original strand, 26200245 - 26200352
Alignment:
Q  111 gaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacc-caaaaaatatgcatcttgttcgtatag 209  Q
    |||||||||||||||||||||||||| || |||||||||||         |||||||||||  | ||||||| |||| ||||||||||||||| ||||||    
T  26200245 gaaggtcacccatcccaaaattgctccaagtcaagcatgtt--------aagttcttatggtttcggctaccacaaagaatatgcatcttgtttgtatag 26200336  T
Q  210 gtagtaacaaataatt 225  Q
     ||||| |||| ||||    
T  26200337 ttagtatcaaacaatt 26200352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 27029416 - 27029346
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||  |||| |||||| |||||||||||||    
T  27029416 gagttcttatggaatgggctaccgaaaagaagatgcatcttgttgatataagtagtaccaaataattctta 27029346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 4127438 - 4127508
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  4127438 gagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 4127508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 50398539 - 50398609
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  50398539 gagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 50398609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 15306052 - 15306153
Alignment:
Q  120 ccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaaca 218  Q
    ||||||||| ||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| ||    
T  15306052 ccatcccaagattgctcaaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgtttatataggtagtacca 15306151  T
Q  219 aa 220  Q
    ||    
T  15306152 aa 15306153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 287
Target Start/End: Original strand, 24629538 - 24629571
Alignment:
Q  254 acacgacctcaggaaccctctcattccgatgtga 287  Q
    |||||||||||||||||||||||||||| |||||    
T  24629538 acacgacctcaggaaccctctcattccggtgtga 24629571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 29628669 - 29628738
Alignment:
Q  160 gagttcttatggaattggctacccaaaaaatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||||||||||||| ||||||| || ||| |  |||||||||  ||||||||||| |||| ||||||||    
T  29628669 gagttcttatggaatgggctaccaaacaaagacacatcttgttgatataggtagtaccaaacaattctta 29628738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 29628755 - 29628805
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||||||||||||||||  ||||| |||||||| |||||||||| ||||||||    
T  29628755 catgtagtctcatacct--acacggcctcaggatccctctcatttcgatgtga 29628805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 245328 - 245155
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || ||||||||||||||||    |||||| | ||||||||||||||| |||||||||||||| ||||||| |       
T  245328 acacgagtcttttcaccgtgttttgtcctcactcacacgctttccgagaaacttcccagaaggtcacccatctcaaaattgctctaagtcaagcacg--- 245232  T
Q  153 atttgcagagttcttatggaattggctacccaaaaaatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
     ||||  ||||||||||||  | ||||||| ||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  245231 ctttgtggagttcttatggtttaggctaccgaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 245155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 30961800 - 30961946
Alignment:
Q  70 gtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttat 169  Q
    ||||||| || |||||| ||||||||||   |||||  | |||||||||||||||||||||||||||||| ||||||| |||||  ||  ||||||||||    
T  30961800 gtgttttgtcctcactcgcacgctttctgagaaactacccagaaggtcacccatcccaaaattgctctaagtcaagcacgtttaactgtggagttcttat 30961899  T
Q  170 ggaattggctacc-caaaaaatatgcatcttgttcgtataggtagta 215  Q
    ||  | |||||||  |||||||||||||||||||  |||||||||||    
T  30961900 ggtttcggctaccgaaaaaaatatgcatcttgttgatataggtagta 30961946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 30966936 - 30966759
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| |||||||||| || |||||| ||||||| |    |||||| |  | |||||||||||||||||||||||| || | ||||| | ||    
T  30966936 acacgagtcttttcaacgtgttttgtcctcactcgcacgcttaccgagaaacttcccggtaggtcacccatcccaaaattgctccaagttaagcacgctt 30966837  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  30966836 aactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 30966759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 33771187 - 33771070
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||||| |||  ||  ||||||||||| |||  |||||| |||| || ||||||||||||  |||||||    
T  33771187 aggtcacccatcccaaaattgctccaagtcaagcatgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatcttgttgatataggt 33771088  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  33771087 agtaccaaacaattctta 33771070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 8256725 - 8256595
Alignment:
Q  100 aaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatct 198  Q
    ||||||| | || |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||    
T  8256725 aaaacttcccagcaggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatct 8256626  T
Q  199 tgttcgtataggtagtaacaaataattctta 229  Q
    ||||  ||||||||||| | || ||||||||    
T  8256625 tgttgatataggtagtacccaacaattctta 8256595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 11388373 - 11388260
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  11388373 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 11388274  T
Q  212 agtaacaaataatt 225  Q
    |||| |||| ||||    
T  11388273 agtaccaaacaatt 11388260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 1912663 - 1912594
Alignment:
Q  160 gagttcttatggaattggctacccaaaaaatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||||||||||||| ||||||| ||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  1912663 gagttcttatggaatgggctaccaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 1912594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 24818571 - 24818395
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || |||||| ||||||| | |  |||||| |  | ||||||||||||| |||||||||| || ||||||| | ||    
T  24818571 acacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccaggaaacttcccggtaggtcacccatcc-aaaattgctccaagtcaagcacgctt 24818473  T
Q  153 atttgcagagttcttatggaattggctacccaaaaaat-atgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  |||||||||||||||  |||||| ||||||  ||||||||||||  |||||||||||  ||| ||||||||    
T  24818472 aactgtggagttcttatggaatgagctaccgaaaaaaagatgcatcttgttgatataggtagtactaaacaattctta 24818395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 30963163 - 30963340
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| ||||| |||| || |||||| |||||||||    |||||| | |||||||||| |||||||||||||||| || ||||||| | ||    
T  30963163 acacgagtcttttcaacgtattttatcctcactcgcacgctttccgagaaacttccaagaaggtcactcatcccaaaattgctccaagtcaagcacgctt 30963262  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  || ||||||||   | ||||||| |||| || ||||||||||||  ||||||||||| | || ||||||||    
T  30963263 aactgttgaattcttatgatttgggctaccaaaaataagatgcatcttgttgatataggtagtacctaacaattctta 30963340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 41754475 - 41754358
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||| ||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  ||||| |    
T  41754475 aggtcatccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatatagat 41754376  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  41754375 agtaccaaacaattctta 41754358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 33174642 - 33174572
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  33174642 gagttcttatggaatgggctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 33174572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 5399777 - 5399894
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||| ||| || ||||||| | |||  |    ||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  5399777 aggtcacccatcccaaaatttctccaagtcaagcacgcttaactatgaagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 5399876  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  5399877 agtaccaaacaattctta 5399894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 11394719 - 11394607
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||   ||||||||||||| | |||||| |||| || ||||||||||||  |||||||    
T  11394719 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtgaagttcttatggaa-tagctaccgaaaagaagatgcatcttgttgatataggt 11394621  T
Q  212 agtaacaaataatt 225  Q
    |||| |||| ||||    
T  11394620 agtaccaaacaatt 11394607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 25337957 - 25338074
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  ||||||||||| |||  |||| | |||| || ||||||||||||  |||||||    
T  25337957 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatgaaatgagctatcgaaaagaagatgcatcttgttgatataggt 25338056  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  25338057 agtacccaacaattctta 25338074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 312
Target Start/End: Complemental strand, 1953207 - 1953133
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtgaattcgattttcctaaaagatgtcag 312  Q
    |||| ||||||||||||||||  ||| |||||| |||||||||||||||||| ||||| |||| | ||||| ||||||    
T  1953207 catgcagtctcatacctgcac--gacttcaggatccctctcattccgatgtg-attcggttttgccaaaagctgtcag 1953133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 18098885 - 18098955
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  18098885 gagttcttatggaatgagctaccaaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 18098955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 187
Target Start/End: Original strand, 32377632 - 32377750
Alignment:
Q  69 cgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttctta 168  Q
    |||||||| || |||||| ||||||| |   |||||||||  | |||||||| ||||||||||||||| || ||||||||| |||  ||  ||||||||     
T  32377632 cgtgttttgtcctcactcgcacgcttaccggaaaactttccggtaggtcacctatcccaaaattgctccaagtcaagcatgcttaactgtggagttcttt 32377731  T
Q  169 tggaattggctacccaaaa 187  Q
    ||||||  |||||| ||||    
T  32377732 tggaatgagctaccgaaaa 32377750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 1912577 - 1912527
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    ||||||||||||||||| || |  ||||||||| |||||||||||||||||||    
T  1912577 catgtagtctcatacctacata--acctcaggatccctctcattccgatgtga 1912527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 18098972 - 18099022
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||||||||||||||||  ||||| ||||||||  ||||||||||||||||||    
T  18098972 catgtagtctcatacct--acacggcctcaggattcctctcattccgatgtga 18099022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 25338091 - 25338141
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||| |||| |||||||||||  |||||||||||||||||||||||| |||||    
T  25338091 catgcagtcccatacctgcac--gacctcaggaaccctctcattccggtgtga 25338141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 29804860 - 29804751
Alignment:
Q  121 catcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaa 219  Q
    |||||||||||||||  || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| | |    
T  29804860 catcccaaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtaccca 29804761  T
Q  220 ataattctta 229  Q
    | ||||||||    
T  29804760 acaattctta 29804751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 33175010 - 33174960
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    ||||||||| |||||||  ||||| |||||||| |||||||||||||||||||    
T  33175010 catgtagtcccatacct--acacggcctcaggatccctctcattccgatgtga 33174960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 27022239 - 27022415
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||||| |||||||| || |||||| ||||||| | | ||||||||| || |||||||||||||||||||||||| || ||||||| | ||    
T  27022239 acacgagtctttttagcgtgttttgtcctcactcgcacgcttacca-aaaactttccagtaggtcacccatcccaaaattgctccaagtcaagcacgctt 27022337  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  |||||||||||||||  ||| || |||| || |||||| |||||  ||||||||||| |||| ||||||||    
T  27022338 aactgtggagttcttatggaatgagctgccgaaaataagatgcatgttgttgatataggtagtaccaaacaattctta 27022415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 22548449 - 22548626
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || |||||| ||||||| ||   |||||| |  | |||||||||||||||||||||||| || ||||||| | ||    
T  22548449 acacgagtcttttcagcgtgttttgtcctcactcgcacgcttactgggaaacttcccggtaggtcacccatcccaaaattgctccaagtcaagcacgctt 22548548  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  ||||| |||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  22548549 aactgtggagttattatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 22548626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 12827214 - 12827331
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  12827214 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 12827313  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  12827314 agtacccaacaattctta 12827331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 22548955 - 22549072
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  ||||| |||||||||  |||||| |||| || ||||||||||||  |||||||    
T  22548955 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagtttttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 22549054  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  22549055 agtaccaaacaattctta 22549072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 25148153 - 25148036
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| |||||||||||||||  |||||||    
T  25148153 aggtcacccatcccaaaattgctcaaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaatatgcatcttgttgatataggt 25148054  T
Q  212 agtaacaaataattctta 229  Q
    |  | |||| ||||||||    
T  25148053 aagaccaaacaattctta 25148036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 114 - 229
Target Start/End: Complemental strand, 25144957 - 25144841
Alignment:
Q  114 ggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggta 212  Q
    ||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || |||||||||| |  ||||||||    
T  25144957 ggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgctgatataggta 25144858  T
Q  213 gtaacaaataattctta 229  Q
    ||| |||| ||||||||    
T  25144857 gtaccaaacaattctta 25144841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 10844575 - 10844692
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||  || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  10844575 aggtcacccatcccaaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttaatataggt 10844674  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| || |||||    
T  10844675 agtaccaaacaactctta 10844692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 22026565 - 22026448
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||| ||||||||||| ||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  22026565 aggttacccatcccaatattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 22026466  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  22026465 agtaccaaacaattctta 22026448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 34308439 - 34308556
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||| ||||||||||| ||  |||||| | |||  ||  ||||||||||||||| ||||||| |||| || ||||||||||||  |||||||    
T  34308439 aggtcacccatctcaaaattgctccaagccaagcacgcttaagtgtggagttcttatggaataggctaccgaaaagaagatgcatcttgttgatataggt 34308538  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| | ||||||    
T  34308539 agtaccaaacagttctta 34308556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 31283612 - 31283722
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||||| |||||||||| || |||||||   |||  ||  ||||||||||||||| ||||||| |||| || ||||||||||||  |||||||    
T  31283612 aggtcacccatcc-aaaattgctcaaagtcaagcacacttaactgtggagttcttatggaatgggctaccgaaaagaagatgcatcttgttaatataggt 31283710  T
Q  212 agtaacaaataa 223  Q
    |||| |||||||    
T  31283711 agtaccaaataa 31283722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 8080350 - 8080419
Alignment:
Q  161 agttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  8080350 agttcttatggaatgggctaccaaaaagaaaatgcatcttgttgatataggtagtaccaaacaattctta 8080419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 15567909 - 15567993
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctct 137  Q
    |||||||||||||||||||||||| || |||||| |||  ||||    |||||| | ||||  ||||||||||||||||||||||    
T  15567909 acacgggtctttttaacgtgttttgtcctcactctcacattttccgagaaacttcctagaaattcacccatcccaaaattgctct 15567993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 229
Target Start/End: Complemental strand, 2044298 - 2044127
Alignment:
Q  59 gtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgc 158  Q
    ||||||| | |||||||| || |||||| ||||||| |   ||||||| | |  ||||||||||||| || | | ||| || ||||||| | |||  ||     
T  2044298 gtcttttcagcgtgttttgtcctcactcgcacgcttaccggaaaacttcccattaggtcacccatccaaagactactccaagtcaagcacgcttaactgt 2044199  T
Q  159 agagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
     ||||| ||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  2044198 ggagttattatggaatgggctaccaaaaagaaaatgcatcttgttgatataggtagtatcaaacaattctta 2044127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 229
Target Start/End: Original strand, 33852164 - 33852335
Alignment:
Q  59 gtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgc 158  Q
    ||||||||| |||||||| || |||||| |||||||   |  ||||||||    ||||||||||||| || | | ||| || ||||||| | ||| |||     
T  33852164 gtctttttagcgtgttttgtcctcactcgcacgcttatcatgaaactttccgataggtcacccatccaaagactactccaagtcaagcacgcttaattgt 33852263  T
Q  159 agagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
      |||||||||||||| ||||||| |||| || || |||||||||  ||||||||||| |||| ||||||||    
T  33852264 gaagttcttatggaatgggctaccaaaaagaagatacatcttgttaatataggtagtaccaaacaattctta 33852335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 6466914 - 6466860
Alignment:
Q  91 gctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaag 145  Q
    |||||||| ||||||| | |||||||||||||| |||||||||||| || |||||    
T  6466914 gctttctagaaaacttccaagaaggtcacccataccaaaattgctccaagtcaag 6466860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 10845022 - 10844952
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  10845022 gagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 10844952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 27926081 - 27925968
Alignment:
Q  116 tcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagt 214  Q
    |||||||||||||| |||||| || ||||||| | |||  ||  ||||||||||| |||  |||||| |||| || ||||||||||||  ||||||||||    
T  27926081 tcacccatcccaaa-ttgctccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatcttgttgatataggtagt 27925983  T
Q  215 aacaaataattctta 229  Q
    | |||| ||||||||    
T  27925982 accaaacaattctta 27925968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 34308895 - 34308985
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgtt 202  Q
    |||||||||||| ||||||||||| ||  |||||| | |||  ||  ||||||||||||||| ||||||| |||| || ||||||||||||    
T  34308895 aggtcacccatctcaaaattgctccaagccaagcacgcttaactgtggagttcttatggaataggctaccgaaaagaagatgcatcttgtt 34308985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 2044110 - 2044060
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    ||||||||||||||||| ||||   |||||||| |||||||||||||||||||    
T  2044110 catgtagtctcatacctacacag--cctcaggatccctctcattccgatgtga 2044060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 229
Target Start/End: Complemental strand, 28453536 - 28453407
Alignment:
Q  101 aaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacc-caaaaaatatgcatctt 199  Q
    |||||| |||| |||||| |||||| || | | ||| || ||||||| | |||  || |||||||||||||||| |||||||  ||| || |||||||||    
T  28453536 aaacttccgagtaggtcatccatccaaagactactccaagtcaagcacgcttaactgtagagttcttatggaatgggctaccataaagaagatgcatctt 28453437  T
Q  200 gttcgtataggtagtaacaaataattctta 229  Q
    |||  |||||||||||  ||| ||||||||    
T  28453436 gttaatataggtagtataaaacaattctta 28453407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 41659065 - 41659182
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||| ||||||||||||||| || |||| || | |||  ||  ||||||||||| |||  |||| | |||| || ||||||||||||  |||||||    
T  41659065 aggtcacctatcccaaaattgctccaagtcaaacacgcttaactgtggagttcttatgtaatgagctatcgaaaagaagatgcatcttgttgatataggt 41659164  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  41659165 agtaccaaacaattctta 41659182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 41913216 - 41913039
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| || |||| |||||||||| || |||||  ||||||| | |  |||||||| || ||||||| ||||| || | | ||  || ||||||| | ||    
T  41913216 acacgagttttttcaacgtgttttgtcctcacttgcacgcttaccaagaaactttctagtaggtcactcatccaaagactacttcaagtcaagcacgctt 41913117  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||| ||||||||||||||| ||||||| |||| || | ||||||||||  ||||||||| | |||| ||||||||    
T  41913116 aactgcggagttcttatggaatgggctaccaaaaagaagacgcatcttgttgatataggtagcaccaaacaattctta 41913039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 32386634 - 32386811
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||||| |||||||| || ||||||  |||||| | |  ||||||||  |  ||||||||||||||||||||||| || ||||||| | ||    
T  32386634 acacgagtctttttagcgtgttttgtcctcactcggacgcttaccaagaaactttccggtgggtcacccatcccaaaattgctccaagtcaagcacgctt 32386733  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  |||||||||||||||| |||||  |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  32386734 aactgtggagttcttatggaattagctactgaaaagaagatgcatcttgttaatataggtagtaccaaacaattctta 32386811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 29224513 - 29224393
Alignment:
Q  110 agaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtata 208  Q
    ||||||||||||||||||||||||||| || ||||||| | ||| |||   |||||||||||  | ||||||| |||| || |||||||||||| |||||    
T  29224513 agaaggtcacccatcccaaaattgctccaagtcaagcacgcttaattgtgaagttcttatggtttgggctaccgaaaagaagatgcatcttgttagtata 29224414  T
Q  209 ggtagtaacaaataattctta 229  Q
    ||||||| |||| ||||||||    
T  29224413 ggtagtaccaaacaattctta 29224393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 31284236 - 31284353
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  31284236 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 31284335  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  31284336 agtaccaaacaattctta 31284353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 13150514 - 13150631
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  13150514 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 13150613  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  13150614 agtacccaacaattctta 13150631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 50347932 - 50347815
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  50347932 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccaaaaagaagatgcatcttgttgatataggt 50347833  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  50347832 agtacccaacaattctta 50347815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 120 - 229
Target Start/End: Complemental strand, 28561925 - 28561815
Alignment:
Q  120 ccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaaca 218  Q
    ||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| ||    
T  28561925 ccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtacca 28561826  T
Q  219 aataattctta 229  Q
    || ||||||||    
T  28561825 aacaattctta 28561815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 39640989 - 39640887
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtgaattcgattttcctaaaagatgtcaggagttgtttattgccatgtctt 334  Q
    |||||||||||||||||  ||||| |||||||| | ||||||||| ||||||| ||||||| | ||||||| |||| ||||  ||| |||| ||||||||    
T  39640989 catgtagtctcatacct--acacggcctcaggatctctctcattctgatgtga-ttcgattcttctaaaagctgtcgggagccgttcattgtcatgtctt 39640893  T
Q  335 gtgcac 340  Q
    ||||||    
T  39640892 gtgcac 39640887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 11179994 - 11180111
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  ||||||||||| |||  |||||| |||| || ||||||||||||  |||||||    
T  11179994 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatcttgttgatataggt 11180093  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  11180094 agtacccaacaattctta 11180111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 32227181 - 32227298
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  ||||||||||| |||  |||||| |||| || ||||||||||||  |||||||    
T  32227181 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccaaaaagaagatgcatcttgttaatataggt 32227280  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  32227281 agtacccaacaattctta 32227298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 32227686 - 32227569
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  ||||||||||| |||  |||||| |||| || ||||||||||||  |||||||    
T  32227686 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatcttgttaatataggt 32227587  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  32227586 agtacccaacaattctta 32227569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 170
Target Start/End: Complemental strand, 3900016 - 3899929
Alignment:
Q  83 actcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatg 170  Q
    ||||||||||||| |   |||||||| |||||||||||||| |||||||||||| || ||||||||| ||  |||  |||||||||||    
T  3900016 actcacacgctttttgggaaactttccagaaggtcacccataccaaaattgctccaagtcaagcatgctttattgtggagttcttatg 3899929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 25230712 - 25230782
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  25230712 gagttcttatggaatgggctaccaaaaagaaaatgcatcttgttgatataggtagtaccaaacaattctta 25230782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 25238299 - 25238369
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  25238299 gagttcttatggaatgggctaccaaaaagaaaatgcatcttgttgatataggtagtaccaaacaattctta 25238369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 25239084 - 25239154
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  25239084 gagttcttatggaatgggctaccaaaaagaagatgcatcttgttgatataggtagtaccaaaaaattctta 25239154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 14820340 - 14820223
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||||||||||||| || || ||||||| | |||  ||  ||||||||||||||   |||||| |||| || ||||||||||||  |||| ||    
T  14820340 aggtcacccatcccaaaattgttccaagtcaagcacgcttaactgtggagttcttatggaacgagctaccgaaaataagatgcatcttgttgatataagt 14820241  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  14820240 agtaccaaacaattctta 14820223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 16811567 - 16811450
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  || ||||||||||||  |||||| |||| || ||||||||||||   ||||||    
T  16811567 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggaattcttatggaatgagctaccgaaaagaagatgcatcttgttgaaataggt 16811468  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  16811467 agtacccaacaattctta 16811450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 27187290 - 27187407
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  ||||||||||| |||  |||||| |||| || |||||||||  |  |||||||    
T  27187290 aggtcacccatcccaaaattgctcaaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatcttagtgatataggt 27187389  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  27187390 agtaccaaacaattctta 27187407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 229
Target Start/End: Complemental strand, 30529825 - 30529756
Alignment:
Q  161 agttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  30529825 agttcttatggaatgggctaccaaaaagaagatgcatcttgttgatataggtagtaccaaaaaattctta 30529756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 14814195 - 14814022
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaac-tttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtt 151  Q
    ||||| ||||||| | |||||||| ||||||||| ||||||| |    |||| ||||| | |||||||||||| ||||||||||| || ||||||| | |    
T  14814195 acacgagtcttttcagcgtgttttgtcttcactcgcacgcttaccgggaaacctttcg-gtaggtcacccatcacaaaattgctccaagtcaagcacgct 14814097  T
Q  152 tatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataatt 225  Q
    ||  ||  ||||||||||||||   |||||| |||| || ||||||||| ||  ||||||||||| |||| ||||    
T  14814096 taactgtggagttcttatggaacgagctaccgaaaagaagatgcatcttattgatataggtagtaccaaacaatt 14814022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 25230255 - 25230325
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||| |||| ||||||| |||| || ||| ||||||||  ||||||||||| |||||||||||||    
T  25230255 gagttcttattgaatgggctaccaaaaagaagatgtatcttgttgatataggtagtaccaaataattctta 25230325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 25237842 - 25237912
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||| |||| ||||||| |||| || ||| ||||||||  ||||||||||| |||||||||||||    
T  25237842 gagttcttattgaatgggctaccaaaaagaagatgtatcttgttgatataggtagtaccaaataattctta 25237912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 25248250 - 25248180
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||| ||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  25248250 gagttattatggaatgggctaccaaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 25248180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 287
Target Start/End: Original strand, 32388841 - 32388875
Alignment:
Q  253 cacacgacctcaggaaccctctcattccgatgtga 287  Q
    ||||||||||||||| |||||||||||||||||||    
T  32388841 cacacgacctcaggatccctctcattccgatgtga 32388875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 13150059 - 13150176
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||| |||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||  |||| || ||||||||||||  || ||||    
T  13150059 aggtcacccattccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctactgaaaagaagatgcatcttgttgatacaggt 13150158  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  13150159 agtacccaacaattctta 13150176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 14814001 - 14813951
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||| ||||||||||||  ||||| |||||||||||||||||||||| |||||    
T  14814001 catgcagtctcatacct--acacggcctcaggaaccctctcattccggtgtga 14813951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 20885077 - 20885194
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||||| || | | ||| || ||||||| | ||| |||  |||||||||||||||  |||||  |||| || ||||||||||||  |||||||    
T  20885077 aggtcacccatccaaatactactccaagtcaagcacgcttaattgtggagttcttatggaatgtgctactaaaaagaagatgcatcttgttgatataggt 20885176  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  20885177 agtatcaaacaattctta 20885194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 25230342 - 25230392
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    ||||||||| |||||||  |||||||||||||| ||||||| |||||||||||    
T  25230342 catgtagtcccatacct--acacgacctcaggatccctctccttccgatgtga 25230392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 25237929 - 25237979
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    ||||||||| |||||||  |||||||||||||| ||||||| |||||||||||    
T  25237929 catgtagtcccatacct--acacgacctcaggatccctctccttccgatgtga 25237979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 30529739 - 30529689
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    ||||||||||||||||| ||||   |||||||| |||||||||||||||||||    
T  30529739 catgtagtctcatacctacacag--cctcaggatccctctcattccgatgtga 30529689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 41472353 - 41472303
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||| ||||||||||||| ||  |||||||||| |||||||||||||||||||    
T  41472353 catgcagtctcatacctgtac--gacctcaggatccctctcattccgatgtga 41472303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 41472486 - 41472369
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||||||||||||| |  || ||||||| |||||   |  |||||||||||||||   ||||| |||| || ||||||||||||  |||| ||    
T  41472486 aggtcacccatcccaaaattgtttcaagtcaagcacgtttaaccgtggagttcttatggaatgatctaccgaaaagaagatgcatcttgttgatatatgt 41472387  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  41472386 agtaccaaacaattctta 41472369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 70 - 225
Target Start/End: Original strand, 18750113 - 18750269
Alignment:
Q  70 gtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttat 169  Q
    ||||||| || |||||| ||| ||||||| ||||||| | |||||||||||||||| |||||||||| || ||||| | | ||| ||   ||||||||||    
T  18750113 gtgttttgtcctcactcgcacactttctaaaaaacttcctagaaggtcacccatcctaaaattgctccaagtcaagtacgattaattatggagttcttat 18750212  T
Q  170 ggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataatt 225  Q
    |||||  |||||| |||| || ||||||||| || |||||||||||| |||| ||||    
T  18750213 ggaataagctaccgaaaagaagatgcatctttttggtataggtagtaccaaacaatt 18750269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 34371858 - 34371682
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| |||||||||| || |||||| ||||||| |    |||||| | || |||||||||||||||||||||||| || ||||||| | ||    
T  34371858 acacgagtcttttcaacgtgttttgtcctcactcgcacgcttaccgggaaacttcccagtaggtcacccatcccaaaattgctccaagtcaagcacgctt 34371759  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctt 228  Q
    |  ||  | |||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| |||||||    
T  34371758 aactgtggtgttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctt 34371682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 189254 - 189137
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||||| |||  ||  |||||||||||||||  |||||| |||| || || |||||||||  |||||||    
T  189254 aggtcacccatcccaaaattgctccaagtcaagcatgcttaactgtggagttcttatggaatgagctaccgaaaagaagatacatcttgttgatataggt 189155  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  189154 agtaccaaacaattctta 189137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 228
Target Start/End: Complemental strand, 2474651 - 2474475
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | ||||||||||| |||||| || |||| |    ||||||||  | |||||||||||| ||||||||||| || ||||||| | ||    
T  2474651 acacgagtcttttcagcgtgttttttcctcactcgcatgcttaccgggaaactttccggtaggtcacccatctcaaaattgctccaagtcaagcacgctt 2474552  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctt 228  Q
    |  ||  |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| |||||||    
T  2474551 aactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctt 2474475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 2194002 - 2193885
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  2194002 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 2193903  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  2193902 agtacccaacaattctta 2193885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 2474145 - 2474028
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  ||||||     
T  2474145 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggc 2474046  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  2474045 agtaccaaacaattctta 2474028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 8641994 - 8642111
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||||  |||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  8641994 aggtcacccatcttaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 8642093  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||||||||||||    
T  8642094 agtaccaaataattctta 8642111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 24182153 - 24182322
Alignment:
Q  60 tctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgca 159  Q
    |||||| |||||||||| || |||||| ||| |||||    |||||||  ||||||||||||||||||||||||||| || |||| || | |||  ||      
T  24182153 tcttttcaacgtgttttatcctcactcgcacactttccgagaaactttttagaaggtcacccatcccaaaattgctccaagtcaaccacgcttaactgtt 24182252  T
Q  160 gagttcttatggaattggctacccaaaaaatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
     |||| ||||||  | || |||| ||| || |||||||||||| |||||| ||||| |||||||||||||    
T  24182253 aagttattatggtttggggtaccgaaagaagatgcatcttgttggtatagatagtaccaaataattctta 24182322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 17445320 - 17445532
Alignment:
Q  19 cgacttctaggattgtcgactgacctgagaatcga-cacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtc 117  Q
    |||||| ||||||||||||||||||  | || | | |||| ||||||| | |||||||| || |||||| ||||||| |    |||||| |  | |||||    
T  17445320 cgacttttaggattgtcgactgaccccacaaaccaacacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccgggaaacttcccggtaggtc 17445419  T
Q  118 acccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctaccca-aaaaatatgcatcttgttcgtataggtagtaa 216  Q
    ||||||||||||||||||| || ||||||| | |||  ||  || ||||||||||||  |||||| | || || ||||||||||||  |||||||||||     
T  17445420 acccatcccaaaattgctccaagtcaagcacgcttaactgtggatttcttatggaatgagctaccgataagaagatgcatcttgttgatataggtagtac 17445519  T
Q  217 caaataattctta 229  Q
    |||| ||||||||    
T  17445520 caaacaattctta 17445532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 226
Target Start/End: Original strand, 3886973 - 3887131
Alignment:
Q  69 cgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttctta 168  Q
    |||||||| || |||||| ||||||| ||   |||||| | || ||||||||||||| |||||||||| || ||||||| | |||  ||   ||||||||    
T  3886973 cgtgttttgtcctcactcgcacgcttactgggaaacttcccagtaggtcacccatccaaaaattgctccaagtcaagcacgcttaactgtgaagttctta 3887072  T
Q  169 tggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattc 226  Q
    ||||||  | |||| |||| || ||||||||||||  ||||||||||| ||||||||||    
T  3887073 tggaatgagttaccgaaaagaagatgcatcttgttgatataggtagtaccaaataattc 3887131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 112 - 225
Target Start/End: Complemental strand, 18304618 - 18304504
Alignment:
Q  112 aaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtatagg 210  Q
    ||||||||||||| ||||||||||| || |||| |||| |||  ||  || ||||||||||||  |||||| |||| |||||||||||||||  ||||||    
T  18304618 aaggtcacccatcacaaaattgctccaagtcaaacatgcttaactgtggaattcttatggaatgagctaccgaaaagaatatgcatcttgttgatatagg 18304519  T
Q  211 tagtaacaaataatt 225  Q
    ||||| |||| ||||    
T  18304518 tagtaccaaacaatt 18304504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 20039481 - 20039551
Alignment:
Q  159 agagttcttatggaattggctacccaaaaaatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||||||||| ||||||| ||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  20039481 agagttcttatggaatgggctaccaaaagaaaatgcatcttgttgatataggtagtaccaaacaattctta 20039551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 10927303 - 10927480
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || ||| |||||||||| |   ||||||| |  |  |||||||||||| || | | ||| || ||||||| ||||    
T  10927303 acacgagtcttttcagcgtgttttgtcctcattcacacgcttaccgaaaaacttcccggtcggtcacccatccaaagactactccaagtcaagcacgttt 10927402  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  ||||||||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  10927403 aactgtggagttcttatggaatgggctaccaaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 10927480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 42788606 - 42788723
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||| ||||||||||||||| || ||||||| | |||  ||  |||||||| ||||||  |||||| |||| || ||||||||||||  |||||||    
T  42788606 aggtcacctatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttgtggaatgagctaccgaaaagaagatgcatcttgttgatataggt 42788705  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  42788706 agtaccaaacaattctta 42788723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 34372254 - 34372138
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||| ||||||||||||||| || ||||||| | |||  ||   ||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  34372254 aggtcaccaatcccaaaattgctccaagtcaagcacgcttaactgtgaagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 34372155  T
Q  212 agtaacaaataattctt 228  Q
    |||| |||| |||||||    
T  34372154 agtaccaaacaattctt 34372138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 1822045 - 1821975
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  1822045 gagttcttatggaatgggctaccaaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 1821975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 215
Target Start/End: Original strand, 15512972 - 15513075
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||| ||||||||||||||||  || ||||||| ||||| |||  |||||||||||||||  | |||| |||| || ||||||||||||  ||| |||    
T  15512972 aggtcatccatcccaaaattgcttcaagtcaagcacgtttaattgtggagttcttatggaatgagataccaaaaagaagatgcatcttgttgatattggt 15513071  T
Q  212 agta 215  Q
    ||||    
T  15513072 agta 15513075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 27646842 - 27646912
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||||||||| ||| ||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  27646842 gagttcttatgaaatgggctaccaaaaagaagatgcatcttgttgttataggtagtaccaaacaattctta 27646912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 39147078 - 39147008
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||  |||| |||||| |||| ||||||||    
T  39147078 gagttcttatggaatgggctaccaaaaagaagatgcatcttgttaatataagtagtatcaaacaattctta 39147008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 10926906 - 10927023
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||||| || | | ||| || ||||||| |||||  ||  ||||||||||||||| | ||||| |||  || ||||||||||||  |||||||    
T  10926906 aggtcacccatccaaagactactccaagtcaagcacgtttaactgtggagttcttatggaatggactaccaaaaggaagatgcatcttgttgatataggt 10927005  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  10927006 agtaccaaacaattctta 10927023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 10927040 - 10927090
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    ||||||||| |||||||  |||||||||||||| ||||||||||| |||||||    
T  10927040 catgtagtcccatacct--acacgacctcaggatccctctcattctgatgtga 10927090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 10927497 - 10927547
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||||||||||||||||  ||||| ||||| || |||||||||||||||||||    
T  10927497 catgtagtctcatacct--acacggcctcaagatccctctcattccgatgtga 10927547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 16370827 - 16370860
Alignment:
Q  262 tcaggaaccctctcattccgatgtgaattcgatt 295  Q
    ||||||||||||||||| ||||||||||||||||    
T  16370827 tcaggaaccctctcatttcgatgtgaattcgatt 16370860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 21886240 - 21886290
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||| |||| ||||||||||||  ||||||||||||||||||||||| |||||    
T  21886240 catgcagtcccatacctgcaca--acctcaggaaccctctcattccggtgtga 21886290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 22556588 - 22556538
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||| |||| |||||||||||  | ||||||||||||||||||||||||||||    
T  22556588 catgcagtcccatacctgcac--ggcctcaggaaccctctcattccgatgtga 22556538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 2077 - 2287
Alignment:
Q  21 acttctaggattgtcgactgacctgagaatcga-cacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcac 119  Q
    |||| ||||||||||||||||||  | || | | |||| ||||||| || ||||||| || |||||| ||||||| |   ||||||| |  | |||||||    
T  2077 acttttaggattgtcgactgaccccacaaaccaacacgagtcttttcaatgtgttttgtcctcactcgcacgcttaccggaaaacttcccggtaggtcac 2176  T
Q  120 ccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaaca 218  Q
    ||||||||||||||||| || ||||||| | |||  |   |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| ||    
T  2177 ccatcccaaaattgctccaagtcaagcacgcttaactattgagttcttatggaataagctaccgaaaagaagatgcatcttgttgatataggtagtacca 2276  T
Q  219 aataattctta 229  Q
    || ||||||||    
T  2277 aacaattctta 2287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 34405458 - 34405668
Alignment:
Q  21 acttctaggattgtcgactgacctgagaa-tcgacacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcac 119  Q
    |||| ||||||||||||||||||  | || || ||||||||||||| | |||||||| || |||||| ||||||| |    |||||| |  | |||||||    
T  34405458 acttttaggattgtcgactgaccccacaaatcaacacgggtcttttcagcgtgttttgtcctcactcgcacgcttaccgggaaacttcccggtaggtcac 34405557  T
Q  120 ccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaaca 218  Q
    ||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||| ||||  ||||||||||| |     
T  34405558 ccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcctgttgatataggtagtaccc 34405657  T
Q  219 aataattctta 229  Q
    || ||||||||    
T  34405658 aacaattctta 34405668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 2941717 - 2941834
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  2941717 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 2941816  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  2941817 agtaccaaacaattctta 2941834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 13125096 - 13125213
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  13125096 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttaatataggt 13125195  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  13125196 agtaccaaacaattctta 13125213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 2465919 - 2465802
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  2465919 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 2465820  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| || |||||    
T  2465819 agtaccaaacaactctta 2465802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 9125145 - 9125028
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||||||||||||||||  | ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  9125145 aggtcacccatcccaaaattgctccgagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 9125046  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  9125045 agtaccaaacaattctta 9125028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 42515730 - 42515613
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  42515730 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 42515631  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| | ||||||    
T  42515630 agtaccaaacacttctta 42515613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 28496040 - 28495937
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  28496040 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 28495941  T
Q  212 agta 215  Q
    ||||    
T  28495940 agta 28495937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 229
Target Start/End: Complemental strand, 20966240 - 20966120
Alignment:
Q  110 agaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtata 208  Q
    |||| ||||||||||||||||||| |  || ||| |||||||||  ||   ||||||||||||||  |||||| |||| ||||| ||||||||| |||||    
T  20966240 agaatgtcacccatcccaaaattgatacaagtcatgcatgtttaactgtgaagttcttatggaatgagctaccgaaaataatatacatcttgttggtata 20966141  T
Q  209 ggtagtaacaaataattctta 229  Q
    |||| ||  ||||||||||||    
T  20966140 ggtattacaaaataattctta 20966120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 212
Target Start/End: Original strand, 28495568 - 28495668
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  28495568 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctacctaaaagaagatgcatcttgttgatataggt 28495667  T
Q  212 a 212  Q
    |    
T  28495668 a 28495668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 18833472 - 18833369
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || |||| || | |||  ||  ||||||||||| |||| |||||| |||| || ||||||||||||  |||||||    
T  18833472 aggtcacccatcccaaaattgctcaaagtcaaacacgcttaactgtggagttcttatgtaattagctaccgaaaagaagatgcatcttgttgatataggt 18833373  T
Q  212 agta 215  Q
    ||||    
T  18833372 agta 18833369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 5406535 - 5406665
Alignment:
Q  100 aaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatct 198  Q
    ||||||||| |||| |||| ||||||||||||||||| || ||||||| | |||  ||  ||||||||||||  | ||| ||| |||| || ||||||||    
T  5406535 aaaactttccagaaagtcatccatcccaaaattgctcaaagtcaagcacgcttaactgtggagttcttatggtttgggcaaccaaaaataagatgcatct 5406634  T
Q  199 tgttcgtataggtagtaacaaataattctta 229  Q
    ||||  |||||||| || |||| ||||||||    
T  5406635 tgttgatataggtaataccaaacaattctta 5406665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 13122465 - 13122555
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgtt 202  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||    
T  13122465 aggtcacccatcccaaaattgctccaaatcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgtt 13122555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 2466110 - 2465993
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||| ||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||| ||||||  |||||||    
T  2466110 aggtcacccatcccgaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcaacttgttgatataggt 2466011  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| || |||||    
T  2466010 agtaccaaacaactctta 2465993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 174
Target Start/End: Original strand, 43776190 - 43776311
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| |||||| || ||||||| ||  ||||||| |  | ||||||||||| |||||||||||| || ||||||| | ||    
T  43776190 acacgagtcttttcagcgtgttttgtcttcattcgcacgcttactggaaaacttccccgcaggtcacccattccaaaattgctccaagtcaagcacgctt 43776289  T
Q  153 atttgcagagttcttatggaat 174  Q
    |  ||  |||||||||||||||    
T  43776290 aactgtggagttcttatggaat 43776311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 679955 - 679899
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagta 215  Q
    ||||||||||||||| ||||||| |||| |||||||||||||||  |||||||||||    
T  679955 gagttcttatggaatgggctaccaaaaagaatatgcatcttgttgatataggtagta 679899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 229
Target Start/End: Complemental strand, 2189395 - 2189213
Alignment:
Q  48 aatcgacacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagca 147  Q
    |||| ||||| ||||| | | |||||||| || |||||||||||||| |    |||||| |  | ||||||| |||||||||||||||| || |||||||    
T  2189395 aatcaacacgagtcttctcagcgtgttttgtcctcactcacacgcttaccgggaaacttcccggtaggtcactcatcccaaaattgctccaagtcaagca 2189296  T
Q  148 tgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
     | |||  ||  ||||||||||| |||  |||| | |||| || ||||||||||||  ||||||||||  |||| ||||||||    
T  2189295 cgcttaactgtggagttcttatgaaatgagctatcgaaaagaagatgcatcttgttgatataggtagtgccaaacaattctta 2189213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 6719081 - 6719151
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  6719081 gagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 6719151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 6747605 - 6747675
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||| ||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  6747605 gagtttttatggaataggctaccaaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 6747675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 7646438 - 7646528
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgtt 202  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||   ||||||||||||||  |||||| |||| || ||||||||||||    
T  7646438 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtgaagttcttatggaatgagctaccgaaaagaagatgcatcttgtt 7646528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 7646614 - 7646540
Alignment:
Q  100 aaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaat 174  Q
    |||||||||  | |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||    
T  7646614 aaaactttccggtaggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaat 7646540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 26421312 - 26421382
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||||||||||||| | ||||| |||| |||||||||||||||  ||||||||||| |||  ||||||||    
T  26421312 gagttcttatggaatggactaccgaaaaaaatatgcatcttgttgatataggtagtatcaagcaattctta 26421382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 28495702 - 28495749
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatg 284  Q
    ||||||||| |||||||  |||||||||||||| ||||||||||||||||    
T  28495702 catgtagtcccatacct--acacgacctcaggatccctctcattccgatg 28495749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 42515145 - 42515094
Alignment:
Q  234 tcatgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    ||||| ||||||||||||||||  | |||||||| |||||||||||||||||||    
T  42515145 tcatgcagtctcatacctgcac--ggcctcaggatccctctcattccgatgtga 42515094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 42515231 - 42515161
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  42515231 gagttcttatggaatgagctaccaaaaagaaaatgcatcttgttgatataggtagtaccaaacaattctta 42515161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 287
Target Start/End: Original strand, 2611750 - 2611796
Alignment:
Q  239 tagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||||||||||||  ||| |||||||||| |||||||||||||||||||    
T  2611750 tagtctcatacct--acatgacctcaggacccctctcattccgatgtga 2611796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 35474215 - 35474265
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||||||||||||||||  ||||||||| |||| ||||||||||||| |||||    
T  35474215 catgtagtctcatacct--acacgacctaaggatccctctcattccggtgtga 35474265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 36422437 - 36422321
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||||||||| |||||| || ||||||| | |||  ||  ||||||||||| |||  |||||| |||| || ||||||||||||  |||||||    
T  36422437 aggtcacccatcccaaa-ttgctccaagtcaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatcttgttgatataggt 36422339  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  36422338 agtacccaacaattctta 36422321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 42515596 - 42515546
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||||||||||||||||  ||||| |||||||| ||||||||||| |||||||    
T  42515596 catgtagtctcatacct--acacggcctcaggatccctctcattctgatgtga 42515546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 13492579 - 13492401
Alignment:
Q  53 acacgggtctttttaacgtgtttttt-cttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtt 151  Q
    ||||| ||||||| | |||||||||| | |||||| ||||||| ||   |||||| |  | |||||||||||||||||||||||| || ||||||| | |    
T  13492579 acacgagtcttttcagcgtgtttttttcctcactcgcacgcttactgggaaacttcccggtaggtcacccatcccaaaattgctccaagtcaagcacgct 13492480  T
Q  152 tatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||  ||  |||||||||||||||| |||||| |||| || ||||||||||||  |||||||| || |||| ||||||||    
T  13492479 taactgtggagttcttatggaattagctaccgaaaagaagatgcatcttgttgatataggtaatatcaaacaattctta 13492401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 225
Target Start/End: Complemental strand, 13492975 - 13492862
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||||||||||||||||||| ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  13492975 aggtcacccatcccaaaattgctctaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 13492876  T
Q  212 agtaacaaataatt 225  Q
    |||| |||| ||||    
T  13492875 agtaccaaacaatt 13492862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 20850507 - 20850390
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  || ||||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  20850507 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtagagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 20850408  T
Q  212 agtaacaaataattctta 229  Q
    ||||  ||| ||||||||    
T  20850407 agtacaaaacaattctta 20850390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 7912064 - 7911947
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| |  ||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  7912064 aggtcacccatcccaaaattgctccaagtcaagcaagcataactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 7911965  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  7911964 agtaccaaacaattctta 7911947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 17027431 - 17027608
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || |||||||||||||| |    |||||| |  | |||||||||||||||||||||||| || ||||||| | ||    
T  17027431 acacgagtcttttcagcgtgttttgtcctcactcacacgcttaccgggaaacttcccggtaggtcacccatcccaaaattgctccaagtcaagcacgctt 17027530  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  ||||||||||| |||  |||||| |||| || ||| ||||||||  ||||||||||| |||| ||||||||    
T  17027531 aactgtggagttcttatgaaatgagctaccgaaaagaagatgaatcttgttgatataggtagtaccaaacaattctta 17027608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 17205525 - 17205408
Alignment:
Q  112 aaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaaaatatgcatcttgttcgtataggt 211  Q
    |||||| |||||||||||||| ||| || |||||||||||||      ||||||||||||||| ||||||| ||| || ||| |||||||| ||| ||||    
T  17205525 aaggtctcccatcccaaaattactccaaatcaagcatgtttaacaatggagttcttatggaatgggctaccaaaacaagatgaatcttgttggtaaaggt 17205426  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  17205425 agtaccaaacaattctta 17205408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 9352248 - 9352140
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  9352248 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgtttatataggt 9352149  T
Q  212 agtaacaaa 220  Q
    |||| ||||    
T  9352148 agtaccaaa 9352140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 229
Target Start/End: Original strand, 23986223 - 23986394
Alignment:
Q  59 gtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgc 158  Q
    ||||||| | ||||| || || |||||| |||||||||    |||||| | ||||||||||||||||||||||||||| || |||||||   |||  ||     
T  23986223 gtcttttcagcgtgtcttctcctcactcgcacgctttccgtgaaacttcccagaaggtcacccatcccaaaattgctccaagtcaagcacacttaactgt 23986322  T
Q  159 agagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
      |||||||||||  |  |||||| |||| || ||||||||||||| ||||||||||| |||| ||||||||    
T  23986323 gaagttcttatggtttgagctaccgaaaagaagatgcatcttgttcatataggtagtaccaaacaattctta 23986394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 7912496 - 7912382
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||| |||||||||||| || ||||||| |||||  |   |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  7912496 aggtcacccattccaaaattgctccaagtcaagcacgtttaactatggagttcttatggaatgagctaccgaaaagaaaatgcatcttgttgatataggt 7912397  T
Q  212 agtaacaaataattc 226  Q
    |||| |||| |||||    
T  7912396 agtaccaaacaattc 7912382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 220
Target Start/End: Complemental strand, 16520154 - 16520046
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||| ||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  16520154 aggtcacccatctcaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 16520055  T
Q  212 agtaacaaa 220  Q
    |||| ||||    
T  16520054 agtaccaaa 16520046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 229
Target Start/End: Original strand, 2681181 - 2681293
Alignment:
Q  118 acccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaa 216  Q
    |||||||||||||||| || || | ||||| | ||| |||  |||||||||||||||  |||||| |||| || ||||||||||||  ||| |||||||     
T  2681181 acccatcccaaaattgttccaaattaagcacgcttaattgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatatgggtagtac 2681280  T
Q  217 caaataattctta 229  Q
    |||| ||||||||    
T  2681281 caaacaattctta 2681293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 114 - 229
Target Start/End: Original strand, 13191474 - 13191590
Alignment:
Q  114 ggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggta 212  Q
    ||||||||||| ||||||||||| || ||||||| | |||  ||   |||||||||||||   |||||| |||| || ||||||||||||  ||||||||    
T  13191474 ggtcacccatctcaaaattgctccaagtcaagcacgcttaactgtgaagttcttatggaacgagctaccgaaaagaagatgcatcttgttgatataggta 13191573  T
Q  213 gtaacaaataattctta 229  Q
    ||| |||| ||||||||    
T  13191574 gtaccaaacaattctta 13191590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 199
Target Start/End: Complemental strand, 28780296 - 28780209
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatctt 199  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || |||||||||    
T  28780296 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaacaagatgcatctt 28780209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 15929721 - 15929651
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||||||||  |||||| |||| || |||||| |||||  ||||||||||| |||||||||||||    
T  15929721 gagttcttatggaatgagctaccgaaaagaagatgcattttgttgatataggtagtaccaaataattctta 15929651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 340
Target Start/End: Complemental strand, 32292937 - 32292834
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtgaattcgattttcctaaaagatgtcaggagttgtttattgccatgtctt 334  Q
    |||| ||||||||||||||||  || || ||||   |||||||||| ||||||||| | ||| |||| |||||| |||||| || | |||| ||||||||    
T  32292937 catgcagtctcatacctgcac--gatctaaggatttctctcattccaatgtgaatttggtttgcctagaagatgccaggagctgctcattgtcatgtctt 32292840  T
Q  335 gtgcac 340  Q
    ||||||    
T  32292839 gtgcac 32292834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 6331006 - 6331056
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||||||||||||||||  ||||| |||||||| || ||||||||||||||||    
T  6331006 catgtagtctcatacct--acacggcctcaggatccatctcattccgatgtga 6331056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Complemental strand, 16520020 - 16519970
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    ||||||||||||||||| ||||   |||||||| |||||||||||||||||||    
T  16520020 catgtagtctcatacctacacag--cctcaggatccctctcattccgatgtga 16519970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 20896782 - 20896832
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||||||||||||||||  ||||| ||| |||| |||||||||||||||||||    
T  20896782 catgtagtctcatacct--acacggcctaaggatccctctcattccgatgtga 20896832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 11062424 - 11062368
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagta 215  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||  |||||||||||    
T  11062424 gagttcttatggaatgggctaccaaaaagaagatgcatcttgttgatataggtagta 11062368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 2011 - 2128
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  2011 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 2110  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  2111 agtaccaaacaattctta 2128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 1406 - 1289
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  1406 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgtttatataggt 1307  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  1306 agtaccaaacaattctta 1289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 20053980 - 20054157
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | | |||||| || |||||| ||||||| | | ||||||| |  | ||||||||||||||||||||||||  | ||||||| | ||    
T  20053980 acacgagtcttttcagcatgttttgtcctcactcgcacgcttaccagaaaacttcccggtaggtcacccatcccaaaattgctcctagtcaagcacgctt 20054079  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  20054080 aactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 20054157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 20054496 - 20054613
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  20054496 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 20054595  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  20054596 agtaccaaacaattctta 20054613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 20054952 - 20055069
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  20054952 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 20055051  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  20055052 agtaccaaacaattctta 20055069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 20055408 - 20055525
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  20055408 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 20055507  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  20055508 agtaccaaacaattctta 20055525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 20055864 - 20055981
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  20055864 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 20055963  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  20055964 agtaccaaacaattctta 20055981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 20056320 - 20056437
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  20056320 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 20056419  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  20056420 agtaccaaacaattctta 20056437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 20057223 - 20057340
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  20057223 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 20057322  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  20057323 agtaccaaacaattctta 20057340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 20057679 - 20057796
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  20057679 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 20057778  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  20057779 agtaccaaacaattctta 20057796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 20845621 - 20845738
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||| ||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  20845621 aggtcacccatcccaaaatttctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 20845720  T
Q  212 agtaacaaataattctta 229  Q
    ||||||||| ||||||||    
T  20845721 agtaacaaacaattctta 20845738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 16451833 - 16452010
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || |||| | |||||||  |  |||||||||  | |||||||||||||||||||||||| || ||||||| | ||    
T  16451833 acacgagtcttttcagcgtgttttgtcatcacgcgcacgcttattggaaaactttccggtaggtcacccatcccaaaattgctccaagtcaagcacgctt 16451932  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  |||||||||||||||   ||||| |||| || ||||||||||||  ||||||||||| | || ||||||||    
T  16451933 aactgtggagttcttatggaatgaactaccgaaaagaagatgcatcttgttgatataggtagtacccaacaattctta 16452010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 16460986 - 16461163
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || |||| | |||||||  |  |||||||||  | |||||||||||||||||||||||| || ||||||| | ||    
T  16460986 acacgagtcttttcagcgtgttttgtcatcacgcgcacgcttattggaaaactttccggtaggtcacccatcccaaaattgctccaagtcaagcacgctt 16461085  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  |||||||||||||||   ||||| |||| || ||||||||||||  ||||||||||| | || ||||||||    
T  16461086 aactgtggagttcttatggaatgaactaccgaaaagaagatgcatcttgttgatataggtagtacccaacaattctta 16461163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 20056776 - 20056891
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || |||| || | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  20056776 aggtcacccatcccaaaattgctccaagtcaaacacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 20056875  T
Q  212 agtaacaaataattct 227  Q
    |||| |||| ||||||    
T  20056876 agtaccaaacaattct 20056891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 20060300 - 20060417
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||||||||||||| || || |||||||   |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  20060300 aggtcacccatcccaaaattgatccaagtcaagcacacttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 20060399  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  20060400 agtaccaaacaattctta 20060417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 35759508 - 35759685
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || |||||| ||||||| |   ||||||| |  | |||||||| |||||||||| |||| || ||||||| ||||    
T  35759508 acacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccgaaaaacttcccggtaggtcaccaatcccaaaatagctccaagtcaagcacgttt 35759607  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  |    ||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  35759608 aactatgaagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 35759685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 35760874 - 35760991
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||| ||||||||||||||||||| || ||||||| | |||  | | ||||||| |||||||  |||||| |||| || ||||||||||||  |||||||    
T  35760874 aggttacccatcccaaaattgctccaagtcaagcacgcttaactacggagttctcatggaatgagctaccaaaaagaagatgcatcttgttgatataggt 35760973  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  35760974 agtaccaaacaattctta 35760991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 38341092 - 38340975
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaa-aaatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||   ||||||||||||||  |||||| |||  || ||||||||||||  |||||||    
T  38341092 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtgaagttcttatggaatgagctaccgaaatgaagatgcatcttgttgatataggt 38340993  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  38340992 agtaccaaacaattctta 38340975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 51372834 - 51372951
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || |||||||||||   |||||||    
T  51372834 aggtcacccatcccaaaattgctcaaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaataagatgcatcttgtcgatataggt 51372933  T
Q  212 agtaacaaataattctta 229  Q
    ||||  ||| ||||||||    
T  51372934 agtactaaacaattctta 51372951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 23180929 - 23180799
Alignment:
Q  100 aaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaa-aaaatatgcatct 198  Q
    ||||||||| ||||||| ||||||||||||||| ||| || ||||||| | ||| |||  || |||||||||||| ||||| | || | || || |||||    
T  23180929 aaaactttccagaaggtaacccatcccaaaatttctccaagtcaagcacgcttaattgtggaattcttatggaatgggctagcgaatagaagatacatct 23180830  T
Q  199 tgttcgtataggtagtaacaaataattctta 229  Q
    ||||  ||||||||||| |||  ||||||||    
T  23180829 tgttgatataggtagtaccaagcaattctta 23180799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 43057530 - 43057667
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattcttagaggtc-----------atgtagtctcat 247  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| |||||||| | | |           ||||||||||||    
T  43057530 gagttcttatggaatgggctaccgaaaagaagatgcatcttgttaatataggtagtaccaaacaattcttataagccttccttcaaccatgtagtctcat 43057629  T
Q  248 acctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    ||||  ||||| |||||||| |||||||||||||||||||    
T  43057630 acct--acacggcctcaggatccctctcattccgatgtga 43057667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 43057072 - 43057141
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctt 228  Q
    ||||||||||||||| ||||||| |||| || ||||||||||||  ||||||||||| |||| |||||||    
T  43057072 gagttcttatggaatgggctaccgaaaagaagatgcatcttgttgatataggtagtatcaaacaattctt 43057141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 52250392 - 52250275
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||| |||||||||||  || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  52250392 aggtcacccattccaaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggt 52250293  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  52250292 agtacccaacaattctta 52250275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 2328454 - 2328384
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  2328454 gagttcttatggaatgtgctaccaaaaagaagatgcatcttgttaatataggtagtaccaaacaattctta 2328384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 2635063 - 2634993
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||| ||||  |||||| |||| || |||||||||||| |||||||||||| |||| ||||||||    
T  2635063 gagttcttattgaatgagctaccgaaaagaagatgcatcttgttggtataggtagtaccaaacaattctta 2634993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 160 - 229
Target Start/End: Original strand, 20061198 - 20061268
Alignment:
Q  160 gagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  20061198 gagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggtagtaccaaacaattctta 20061268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 229
Target Start/End: Original strand, 30872938 - 30873027
Alignment:
Q  141 tcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||||||||| ||| |||  |||||||||| |||| | ||||| |||| || ||||||||||||  ||||||||||| |||| ||||||||    
T  30872938 tcaagcatgcttaattgtggagttcttatagaatggactaccaaaaagaagatgcatcttgttgatataggtagtatcaaacaattctta 30873027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 35761008 - 35761058
Alignment:
Q  235 catgtagtctcatacctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||| ||||||||||||||||  | |||||||| |||||||||||||||||||    
T  35761008 catgcagtctcatacctgcac--ggcctcaggatccctctcattccgatgtga 35761058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 52250729 - 52250641
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttg 200  Q
    |||||||||||||||||||||||  || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||    
T  52250729 aggtcacccatcccaaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttg 52250641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 52251066 - 52250978
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttg 200  Q
    |||||||||||||||||||||||  || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||    
T  52251066 aggtcacccatcccaaaattgcttcaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttg 52250978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 19212 - 19035
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || |||||||||||||| |    |||||| |  | |||||||||||||||||||||||| || ||||||| | ||    
T  19212 acacgagtcttttcagcgtgttttgtcctcactcacacgcttaccgggaaacttcccggtaggtcacccatcccaaaattgctccaagtcaagcacgctt 19113  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  ||||||||||| |||  |||||| |||| || ||| ||||||||  ||||||||||| |||| ||||||||    
T  19112 aactgtggagttcttatgaaatgagctaccgaaaagaagatgaatcttgttgatataggtagtaccaaacaattctta 19035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 2928 - 2811
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||| |||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| |||||||||||||||  |||||||    
T  2928 aggtctcccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaatatgcatcttgttgatataggt 2829  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  2828 agtacccaacaattctta 2811  T

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Target: scaffold0047 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 18142 - 18278
Alignment:
Q  160 gagttcttatggaattggctacccaaaaaatatgcatcttgttcgtataggtagtaacaaataattcttagaggtc-----------atgtagtctcata 248  Q
    |||||||||||||||| |||||| |||||| ||||||||||||  ||||||||||| |||| |||||||| | |||           |||||||| ||||    
T  18142 gagttcttatggaattagctaccaaaaaaagatgcatcttgttgatataggtagtatcaaacaattcttataagtcttccttcaactatgtagtcacata 18241  T
Q  249 cctgcacacgacctcaggaaccctctcattccgatgtga 287  Q
    |||  ||||| |||||||| |||||||||||||||||||    
T  18242 cct--acacggcctcaggatccctctcattccgatgtga 18278  T

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Target: scaffold0047; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 229
Target Start/End: Original strand, 17498 - 17675
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || |||||| ||||||| |   |||||||||||| ||||||||||||| || | | ||| || ||||||| | ||    
T  17498 acacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccgaaaaactttcgagtaggtcacccatccaaagagtactccaagtcaagcacgctt 17597  T
Q  153 atttgcagagttcttatggaattg-gctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  |||||||||| |||||| |||||| |||| || || |||| ||||  ||||||||||| |||| ||||||||    
T  17598 aactgtggagttcttat-gaattgagctaccaaaaagaagatacatcctgttgatataggtagtaccaaacaattctta 17675  T

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Target: scaffold0022 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 113 - 229
Target Start/End: Original strand, 162638 - 162755
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||| ||||||||| |||||| || ||||||| | |||  ||| |||||||||||||||  |||||| |||| || ||||||||||||  |||||||    
T  162638 aggtcactcatcccaaagttgctccaagtcaagcacgcttaactgcggagttcttatggaatgagctaccgaaaagaagatgcatcttgttaatataggt 162737  T
Q  212 agtaacaaataattctta 229  Q
    |||| |||| ||||||||    
T  162738 agtaccaaacaattctta 162755  T

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Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 163094 - 163181
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatctt 199  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || |||||||||    
T  163094 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaacaagatgcatctt 163181  T

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Target: scaffold0389 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 53 - 212
Target Start/End: Original strand, 13433 - 13593
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || |||||| ||||||| | |  |||||| |  | |||||||||||||||||||||||| || ||||||| | ||    
T  13433 acacgagtcttttcagcgtgttttgtcctcactcgcacgcttacaaagaaacttcccggtaggtcacccatcccaaaattgctcaaagtcaagcacgctt 13532  T
Q  153 atttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggta 212  Q
    |  ||  |||||||||||||||  |||||| |||| || ||||||||||||  ||||||||    
T  13533 aactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatataggta 13593  T

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Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 107425 - 107540
Alignment:
Q  115 gtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtag 213  Q
    |||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || ||||||||||||  ||| |||||    
T  107425 gtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaagaagatgcatcttgttgatattggtag 107524  T
Q  214 taacaaataattctta 229  Q
    || |||| ||||||||    
T  107525 tatcaaacaattctta 107540  T

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Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 105966 - 105789
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactt-tcgagaaggtcacccatcccaaaattgctctaactcaagcatgtt 151  Q
    ||||| ||||||| | |||||||| || |||||| ||||||| | |  |||||| ||| | ||||||| |||||||||||||||| || ||||||| | |    
T  105966 acacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccaggaaacttctcg-gtaggtcacacatcccaaaattgctccaagtcaagcacgct 105868  T
Q  152 tatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    ||  ||  |||||||||||||||  |||||| |||| || |||||| |||||  ||||||||||| |||| ||||||||    
T  105867 taactgtggagttcttatggaatgagctaccgaaaagaagatgcattttgttgatataggtagtaccaaacaattctta 105789  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 229
Target Start/End: Complemental strand, 10545 - 10369
Alignment:
Q  53 acacgggtctttttaacgtgttttttcttcactcacacgctttctacaaaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgttt 152  Q
    ||||| ||||||| | |||||||| || |||||| ||||||| | |  |||||| |  | ||||||||||||| |||||||||| || ||||||| | ||    
T  10545 acacgagtcttttcagcgtgttttgtcctcactcgcacgcttaccaggaaacttcccggtaggtcacccatcc-aaaattgctccaagtcaagcacgctt 10447  T
Q  153 atttgcagagttcttatggaattggctacccaaaaaat-atgcatcttgttcgtataggtagtaacaaataattctta 229  Q
    |  ||  |||||||||||||||  |||||| ||||||  ||||||||||||  |||||||||||  ||| ||||||||    
T  10446 aactgtggagttcttatggaatgagctaccgaaaaaaagatgcatcttgttgatataggtagtactaaacaattctta 10369  T

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Target: scaffold0277 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 14662 - 14749
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatctt 199  Q
    |||||||||||||||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||| |||| || |||||||||    
T  14662 aggtcacccatcccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctaccgaaaacaagatgcatctt 14749  T

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Target: scaffold0137 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 7140 - 7070
Alignment:
Q  101 aaactttcgagaaggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatgg 171  Q
    |||||||| | |||||||||||| |||||||||||| || ||||||||| |||  ||  ||||||||||||    
T  7140 aaactttccaaaaggtcacccataccaaaattgctccaagtcaagcatgcttaactgtggagttcttatgg 7070  T

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Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 154943 - 154826
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||| |||||||||||| || ||||||| | |||  ||  |||||||||||||||  |||||  |||| || ||||||||||||  || ||||    
T  154943 aggtcacccattccaaaattgctccaagtcaagcacgcttaactgtggagttcttatggaatgagctactgaaaagaagatgcatcttgttgatacaggt 154844  T
Q  212 agtaacaaataattctta 229  Q
    |||| | || ||||||||    
T  154843 agtacccaacaattctta 154826  T

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Target: scaffold0333 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 228
Target Start/End: Complemental strand, 5206 - 5091
Alignment:
Q  113 aggtcacccatcccaaaattgctctaactcaagcatgtttatttgcagagttcttatggaattggctacccaaaa-aatatgcatcttgttcgtataggt 211  Q
    ||||||||||||||||| |||||| || | ||||| | |||  ||  ||||||||||| |||  |||||| |||| || ||||||||||||  |||||||    
T  5206 aggtcacccatcccaaa-ttgctccaagttaagcacgcttaactgtggagttcttatgaaatgagctaccgaaaagaagatgcatcttgttaatataggt 5108  T
Q  212 agtaacaaataattctt 228  Q
    |||| |||| |||||||    
T  5107 agtaccaaacaattctt 5091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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