View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4208_low_3 (Length: 409)
Name: NF4208_low_3
Description: NF4208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4208_low_3 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 25828 - 25463
Alignment:
| Q |
20 |
ttctagacgaggagatgcaaccgaaaatctcagattttggactagcaagaatagttggaggcaaggaaactgaggcaagcacagagagggttgttggtac |
119 |
Q |
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| T |
25828 |
ttctagacgaggagatgcaaccgaaaatctcagattttggactagcaagaatagttggagggaaagaaactgaggcaagcacagagagagttgttggtac |
25729 |
T |
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| Q |
120 |
atagtaagttcaattcttagtccnnnnnnnactcctgttttttgctttctcaactattcaaaatgaaattcttctcacannnnnnncaataactttatat |
219 |
Q |
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| T |
25728 |
atagtaagttcagttcttaggcctttt---actcctgctttttgctttctgag-tattcgaattgaaattcttctcacattgttttcaataaccttattt |
25633 |
T |
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| Q |
220 |
c-atgaatttctcaaccatatttatttagatatataataaatttttatataatgggatatttagtccttcatacgagtggttatcttgtgtcgacagtgg |
318 |
Q |
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| T |
25632 |
ttatgaatttctcaaccttatttattaagatatctagtaaatttttgtataatgggatatttagttatttgtacgagtggttttcttgtgtcgacagcgg |
25533 |
T |
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| Q |
319 |
gtacatgtctcctgagtatgccttggatggatatttctcaacaaagtcagatgttttcagttttggcgtt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25532 |
gtacatgtctcctgagtatgccttggatggatatttctcaacaaagtcagatgttttcagttttggcgtt |
25463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 21917995 - 21917881
Alignment:
| Q |
20 |
ttctagacgaggagatgcaaccgaaaatctcagattttggactagcaagaatagttggaggcaaggaaactgaggcaagcacagagagggttgttggtac |
119 |
Q |
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||||||| |||||||||||||| |||||||||||||||||| ||||||||| | ||| |||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
21917995 |
ttctagatgaggagatgcaaccaaaaatctcagattttggaatagcaagaacatttgcaggcaaagaaacagaggcaagcacagagagggttgttggtac |
21917896 |
T |
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| Q |
120 |
atagtaagttcaatt |
134 |
Q |
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||||||||||||||| |
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| T |
21917895 |
atagtaagttcaatt |
21917881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 311 - 380
Target Start/End: Complemental strand, 21917697 - 21917628
Alignment:
| Q |
311 |
gacagtgggtacatgtctcctgagtatgccttggatggatatttctcaacaaagtcagatgttttcagtt |
380 |
Q |
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||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| |
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| T |
21917697 |
gacagcgggtacatgtctcctgagtatgcgttggatggatatatttcaacaaagtcagatgttttcagtt |
21917628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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