View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4208_low_6 (Length: 250)
Name: NF4208_low_6
Description: NF4208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4208_low_6 |
 | |
|
| [»] chr6 (14 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0428 (1 HSPs) |
| |
|
| [»] scaffold1749 (1 HSPs) |
| | |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 31560650 - 31560891
Alignment:
| Q |
9 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31560650 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttgggattaattctcctatagaagcat |
31560749 |
T |
|
| Q |
109 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31560750 |
tacaaaatcatttgcttttggactcggatgatggtgttcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgta |
31560849 |
T |
|
| Q |
209 |
tggccaaatatctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31560850 |
tggccaaatatctcatcgatttagtgcatcctgttttattga |
31560891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 31566969 - 31567210
Alignment:
| Q |
9 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
108 |
Q |
| |
|
||||| |||||||||| || || ||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |
|
|
| T |
31566969 |
gagattaaaaagattgctcaaacaataatgaatatattggagtgcaaatcttcatgtgtttcaaaagatttagttgggattgattctcctatagaagcgt |
31567068 |
T |
|
| Q |
109 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgta |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |
|
|
| T |
31567069 |
tacaaaatcatttgcttttggactcgattgatggtgttcgtgctataggaatttgtggaatggggggaatagggaagacagcccttgctgagactttata |
31567168 |
T |
|
| Q |
209 |
tggccaaatatctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
31567169 |
tggccaaatatctcatcgatttagtgcatcttgttatattga |
31567210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 33402853 - 33402612
Alignment:
| Q |
9 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
108 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
33402853 |
gagattaaaaagattgttcaaaagataatgaatatattggagtgcaaatcttcatgtgtttcaaaagatttagttgggattgattctcctatagaagcat |
33402754 |
T |
|
| Q |
109 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgta |
208 |
Q |
| |
|
|| ||||||||||| ||||||||| || |||||||| ||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| ||| || |
|
|
| T |
33402753 |
taaaaaatcatttggttttggacttggttgatggtgttcgtgctataagaatttgtggaatgggaggaatagggaagacaacccttgctatgaatttata |
33402654 |
T |
|
| Q |
209 |
tggccaaatatctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
33402653 |
tggccaaatctctcatcgatttagtgcatcctgtttcattga |
33402612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 33390313 - 33390070
Alignment:
| Q |
7 |
gtgagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagc |
106 |
Q |
| |
|
||||||| ||||||||||||| | |||||||||||||||| ||| ||| |||||||||||||| ||||||||||| ||||| |||||||||||||||| |
|
|
| T |
33390313 |
gtgagattaaaaagattgttcaaaggataatgaatatattggagtgcaattcttcatgtgtttcgaaagatttagtagggattgattctcctatagaagc |
33390214 |
T |
|
| Q |
107 |
attacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttg |
206 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||| || || ||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
33390213 |
attacaaaatcatttgcttttggactcagttgatggtgttcatgctataggaatttgtggaatgggaggaatagggaagacaacccttgccatgacttta |
33390114 |
T |
|
| Q |
207 |
tatggccaaatatctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33390113 |
tatgaccaaatatctcatcgatttagtgcaaattgttttattga |
33390070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 9169006 - 9168772
Alignment:
| Q |
15 |
aaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaa |
114 |
Q |
| |
|
||||||||||| | | ||||||||| |||| || || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9169006 |
aaaaagattgtacaaaagataatgaacatatgga-gtgcaaatcttcatgtgtttcaaaagatttagttgggattaattctcctatagaagcattacaaa |
9168908 |
T |
|
| Q |
115 |
atcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgtatggcca |
214 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||| | ||||| ||| ||| |||| ||| |
|
|
| T |
9168907 |
atcatttgcttttggactcaattgatggtgttcgtgctataggaatttgtggaatgggaggaatagggaagacaactcttgcaatggttttatatgacca |
9168808 |
T |
|
| Q |
215 |
aatatctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
9168807 |
aatatctcatcgatttagtgcatcctgttttattga |
9168772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 33642443 - 33642684
Alignment:
| Q |
9 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
108 |
Q |
| |
|
||||| ||||||||||||| | |||||| |||||||| ||| ||| |||| | |||||||||||||||||||| ||||| ||||||||||| |||||| |
|
|
| T |
33642443 |
gagattaaaaagattgttcaaaagataatcaatatattagagtgcaagtctttaagtgtttcaaaagatttagttgggattgattctcctataaaagcat |
33642542 |
T |
|
| Q |
109 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgta |
208 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| | |||| || |
|
|
| T |
33642543 |
tacaaaatcatttgcttttggactcagttgatggtgttcgtgctataggaatttgtggaatgggaggaatagggaagacaacccttgctacggctttata |
33642642 |
T |
|
| Q |
209 |
tggccaaatatctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
33642643 |
tgaccaaatatctcatcgatttagtgcatcatgttttattga |
33642684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 33059792 - 33059561
Alignment:
| Q |
19 |
agattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaatca |
118 |
Q |
| |
|
||||||||| | |||||| ||||||||| | | ||||| ||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
33059792 |
agattgttcaaaagataatcaatatattggaatgcaaatattcatgtgtttcaaaagatttagttgggattgattctcctatacaagcattacaaaatca |
33059693 |
T |
|
| Q |
119 |
tttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgtatggccaaata |
218 |
Q |
| |
|
|||||||||| |||| | |||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |||||||||||| |
|
|
| T |
33059692 |
tttgcttttgaactcagttgatggtgttcgtgctataggaatttgtggaatgggaggaatagggaaaacaacccttgctacgactttatatggccaaata |
33059593 |
T |
|
| Q |
219 |
tctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
||||||| |||||||||||| ||||||||||| |
|
|
| T |
33059592 |
tctcatcaatttagtgcatcttgttttattga |
33059561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 33306719 - 33306484
Alignment:
| Q |
15 |
aaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaa |
114 |
Q |
| |
|
||||||||||||| | |||||||| ||||||| ||| ||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
33306719 |
aaaaagattgttcaaaagataatgagtatattggagtgcaaatcttcatatatttcaaaagatttagttgggattgattctcctatagaagcattaaaaa |
33306620 |
T |
|
| Q |
115 |
atcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgtatggcca |
214 |
Q |
| |
|
||||||||||||||||||||| |||| ||| | ||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |||| ||| |
|
|
| T |
33306619 |
atcatttgcttttggactcggttgattgtgtttgtgctataggaatttctggaatgggaggaatagggaagacaacccttgctatggctttatatgacca |
33306520 |
T |
|
| Q |
215 |
aatatctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||| |
|
|
| T |
33306519 |
aatatctcatcgatttagtgcatcctgctatattga |
33306484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 33274031 - 33273793
Alignment:
| Q |
9 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
108 |
Q |
| |
|
||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||| | |||| | || |
|
|
| T |
33274031 |
gagattaaaaagattgttcaaacgatcttgaatatattgaagtacaaatcttcatgtttttcaaaagatttagttgggatagattctcgtttagacggat |
33273932 |
T |
|
| Q |
109 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgta |
208 |
Q |
| |
|
||||||||||||| ||||||||||||| ||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || |
|
|
| T |
33273931 |
tacaaaatcatttacttttggactcggttgacagtgttcgtgctataggaatttgtggaatgggaggaatagggaagacaacccttgctatggctttata |
33273832 |
T |
|
| Q |
209 |
tggccaaatatctcatcgatttagtgcatcctgttttat |
247 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
33273831 |
tgatcaaatatctcatcgatttagtgcatcctgttttat |
33273793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 33287770 - 33287540
Alignment:
| Q |
20 |
gattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaatcat |
119 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |
|
|
| T |
33287770 |
gattgttcagacgataatgaatatattggagtgcaaatcttcatgggtttcaaaagatttagttgcgattaattctcctatagaagccttacaaagtcat |
33287671 |
T |
|
| Q |
120 |
ttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgtatggccaaatat |
219 |
Q |
| |
|
|||| |||||| |||| |||||| | ||||| |||||||||||||||||||||||||||||||| ||| ||||| ||||| |||| |||| ||||||| |
|
|
| T |
33287670 |
ttgcatttggattcggttgatggagttcgtgcaataggaatttgtggaatgggaggaatagggaaaacaaccctttctatggctttatatgatcaaatat |
33287571 |
T |
|
| Q |
220 |
ctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
| ||||||||||||| ||| ||||||||||| |
|
|
| T |
33287570 |
cccatcgatttagtggatcttgttttattga |
33287540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 32 - 250
Target Start/End: Complemental strand, 33360295 - 33360077
Alignment:
| Q |
32 |
gataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaatcatttgcttttggac |
131 |
Q |
| |
|
|||||| ||||||||| | | ||||| ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
33360295 |
gataatcaatatattggaatgcaaatattcatgtgtttcaaaagatttagttgagattgattctcctatacaagcattacaaaatcatttgcttttgaac |
33360196 |
T |
|
| Q |
132 |
tcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgtatggccaaatatctcatcgattta |
231 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||| |||||||| ||||| ||| ||||||||| |||||| ||||||||||| ||||| | ||||| |
|
|
| T |
33360195 |
tcggttgatggtgttcgtgctataggaatttgtggaattggaggaattgggaaaacaacccttgctacgactttatatggccaaatctctcaccaattta |
33360096 |
T |
|
| Q |
232 |
gtgcatcctgttttattga |
250 |
Q |
| |
|
||||||| | ||||||||| |
|
|
| T |
33360095 |
gtgcatctttttttattga |
33360077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 33412192 - 33411954
Alignment:
| Q |
9 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
108 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||||| | | |||||||||| ||||||||||||||||| |||| ||||||| ||||||| || |
|
|
| T |
33412192 |
gagattaaaaagattgttcaaaatataatgaatatattggattgtaaatcttcattcatttcaaaagatttagttgggataaattctcggatagaagtat |
33412093 |
T |
|
| Q |
109 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgta |
208 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| | ||| ||| ||||||||||||||||| |||||||| |||||| |||||||||||||||| || |
|
|
| T |
33412092 |
tacaaaatcatttacttttggactcggttgatggtgtttgtgctattggaatttgtggaatgggcggaataggaaagacaacccttgctatgactttata |
33411993 |
T |
|
| Q |
209 |
tggccaaatatctcatcgatttagtgcatcctgttttat |
247 |
Q |
| |
|
|||||| |||||||||| |||||||||||| |||||||| |
|
|
| T |
33411992 |
tggccagatatctcatcaatttagtgcatcttgttttat |
33411954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 33264888 - 33264647
Alignment:
| Q |
9 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
108 |
Q |
| |
|
||||| ||||||||||||| | |||||||| || |||| | | |||||||||||||||||||||||| |||||| ||| |||||| | ||||||||| |
|
|
| T |
33264888 |
gagattaaaaagattgttcaaaagataatgagtacattggaatgcaaatcttcatgtgtttcaaaagacttagttgcgatagattctcgtttagaagcat |
33264789 |
T |
|
| Q |
109 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgta |
208 |
Q |
| |
|
||||||||||||| ||||||||| || |||||||| ||||| |||||||||||| || ||||||||||||||||||||| |||||||||||| ||| || |
|
|
| T |
33264788 |
tacaaaatcatttccttttggacatggttgatggtgttcgtgctataggaatttgggggatgggaggaatagggaagacaacccttgctatgaatttata |
33264689 |
T |
|
| Q |
209 |
tggccaaatatctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
||||||||| | |||||||||| |||||||||||| ||||| |
|
|
| T |
33264688 |
tggccaaatctgtcatcgatttgatgcatcctgtttcattga |
33264647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 13609093 - 13609166
Alignment:
| Q |
125 |
tttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgcta |
198 |
Q |
| |
|
||||||||| ||||||| || ||| ||| |||| |||||||||||||| |||||||| |||||| | ||||||| |
|
|
| T |
13609093 |
tttggactcagatgatgatgttcgagttgtagggatttgtggaatgggcggaataggaaagacaactcttgcta |
13609166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 17438669 - 17438910
Alignment:
| Q |
9 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
108 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||| | | ||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||| |
|
|
| T |
17438669 |
gagattaaaaagattgttcaaaagataatgaatatattggaatgcaaatcttcatgtaattcaaaagatttagttgggataaattctcgtatagaagcat |
17438768 |
T |
|
| Q |
109 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgta |
208 |
Q |
| |
|
|| |||||||||| ||||||||||||| |||||||| ||||| |||||||||||| || ||||||||||||||||||||| |||||||| || ||| || |
|
|
| T |
17438769 |
taaaaaatcatttacttttggactcggttgatggtgttcgtgctataggaatttgggggatgggaggaatagggaagacaacccttgctttggatttata |
17438868 |
T |
|
| Q |
209 |
tggccaaatatctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||| ||||| |
|
|
| T |
17438869 |
tggccaaatctctcatcgatttgatgcatcttgtttcattga |
17438910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 8992 - 8758
Alignment:
| Q |
16 |
aaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaa |
115 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||| || |||||||||| || | |
|
|
| T |
8992 |
aaaagattgttcaaacgatcttgaatatattgaagtgcaaatcttcattcgtttcaaaagatttagttgggataaattctcgtacagaagcattaaaaca |
8893 |
T |
|
| Q |
116 |
tcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgtatggccaa |
215 |
Q |
| |
|
||| || |||||| | |||| |||||||| |||||||||||||||||| || ||||||||||||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
8892 |
tcagttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgctatgaatttatatggccaa |
8793 |
T |
|
| Q |
216 |
atatctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
|| | |||||||||| |||||||||||| ||||| |
|
|
| T |
8792 |
atctgtcatcgatttgatgcatcctgtttcattga |
8758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 244
Target Start/End: Complemental strand, 231 - 3
Alignment:
| Q |
16 |
aaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaa |
115 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||| || |||||||||| || | |
|
|
| T |
231 |
aaaagattgttcaaacgatcttgaatatattgaagtgcaaatcttcattcgtttcaaaagatttagttgggataaattctcgtacagaagcattaaaaca |
132 |
T |
|
| Q |
116 |
tcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgtatggccaa |
215 |
Q |
| |
|
||| || |||||| | |||| |||||||| |||||||||||||||||| || ||||||||||||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
131 |
tcagttacttttgaattcggttgatggtgttcgtgttataggaatttgggggatgggaggaatagggaagacaacccttgctatgaatttatatggccaa |
32 |
T |
|
| Q |
216 |
atatctcatcgatttagtgcatcctgttt |
244 |
Q |
| |
|
|| | |||||||||| |||||||||||| |
|
|
| T |
31 |
atctgtcatcgatttgatgcatcctgttt |
3 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 31496768 - 31497009
Alignment:
| Q |
9 |
gagatgaaaaagattgttcggacgataatgaatatattgaagtacaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcat |
108 |
Q |
| |
|
||||| ||||| ||||||| | ||||||| |||| ||| | | ||||||| |||||||||||| ||||||||| |||| | |||| ||| || || |
|
|
| T |
31496768 |
gagattaaaaaaattgttcaaaggataatggatattttggattgcaaatctatatgtgtttcaaatgatttagttgggatggactctcatatgcaaaaat |
31496867 |
T |
|
| Q |
109 |
tacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgta |
208 |
Q |
| |
|
|| |||| | ||| ||||||||||||| | ||| || |||||| |||||||||||||| |||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
31496868 |
tagaaaagcttttacttttggactcggttaatgatggtcgtgtcataggaatttgtgggatgggaggaatagggaagactacccttgctactgctttgta |
31496967 |
T |
|
| Q |
209 |
tggccaaatatctcatcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
|| |||| ||| ||| |||| ||||| ||||||||||| |
|
|
| T |
31496968 |
tgctaaaatctctaatcaatttgatgcatgatgttttattga |
31497009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 195
Target Start/End: Original strand, 31476862 - 31477001
Alignment:
| Q |
56 |
atcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgctcgtgttata |
155 |
Q |
| |
|
||||||| ||| |||||| ||||||||| |||| ||||||||| | ||| |||| |||| | ||| ||||||||||| | ||||| || || |||| || |
|
|
| T |
31476862 |
atcttcaagtgcttcaaacgatttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgttcatgttgta |
31476961 |
T |
|
| Q |
156 |
ggaatttgtggaatgggaggaatagggaagacagcccttg |
195 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
31476962 |
ggaatttgtgggatgggtggaatagggaagacaacccttg |
31477001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 31150514 - 31150386
Alignment:
| Q |
70 |
caaaagatttagttaggattaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaat |
169 |
Q |
| |
|
||||| ||||||| |||| |||||||| || | | |||| |||| ||||| |||||||||||| ||||| || |||||| ||||||||||||| || |
|
|
| T |
31150514 |
caaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtccgtgttgtaggaatttgtgggat |
31150415 |
T |
|
| Q |
170 |
gggaggaatagggaagacagcccttgcta |
198 |
Q |
| |
|
||| ||| ||||||||||| ||||||||| |
|
|
| T |
31150414 |
gggtggagtagggaagacaacccttgcta |
31150386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 31159433 - 31159297
Alignment:
| Q |
52 |
acaaatcttcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgctcgtgt |
151 |
Q |
| |
|
|||||| ||||||| || ||||||| |||||| | || |||| |||||||||| | || ||||| || ||||||||||| | ||||| || ||| || |
|
|
| T |
31159433 |
acaaattttcatgtcttccaaaagaattagttggaataaattatcctatagaaaaagtagcaaatctattacttttggactccgttgatgatgttcgggt |
31159334 |
T |
|
| Q |
152 |
tataggaatttgtggaatgggaggaatagggaagaca |
188 |
Q |
| |
|
| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
31159333 |
tgtaggaatttgtgggatgggtggaatagggaagaca |
31159297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 123 - 250
Target Start/End: Complemental strand, 31019913 - 31019786
Alignment:
| Q |
123 |
cttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgtatggccaaatatctc |
222 |
Q |
| |
|
||||||||||||| ||||| || ||| ||| ||||||||||||| ||||| ||||||||||||||| | || |||| |||| ||||| ||||| |||| |
|
|
| T |
31019913 |
cttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctggctactgctttatatggtcaaatctctc |
31019814 |
T |
|
| Q |
223 |
atcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
||| |||| |||| ||||||||||| |
|
|
| T |
31019813 |
atcaatttgatgcacgttgttttattga |
31019786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 31029794 - 31029729
Alignment:
| Q |
123 |
cttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagaca |
188 |
Q |
| |
|
||||||||||||| ||||| || ||| ||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
31029794 |
cttttggactcggttgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagaca |
31029729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 195
Target Start/End: Original strand, 31501988 - 31502123
Alignment:
| Q |
60 |
tcatgtgtttcaaaagatttagttaggattaattctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaa |
159 |
Q |
| |
|
||||||||||||||||| ||||| | ||| ||||| |||| |||||||| |||| | ||| || |||||||| | ||||| || || | | |||||| |
|
|
| T |
31501988 |
tcatgtgtttcaaaagacatagttggaattgtttctcatatacaagcattagaaaaacttttactcttggactctgttgatgatgttcaagctgtaggaa |
31502087 |
T |
|
| Q |
160 |
tttgtggaatgggaggaatagggaagacagcccttg |
195 |
Q |
| |
|
| ||||| ||||| ||||||||||||||| |||||| |
|
|
| T |
31502088 |
tctgtgggatgggtggaatagggaagacaacccttg |
31502123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 31161787 - 31161692
Alignment:
| Q |
91 |
attctcctatagaagcattacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaaga |
186 |
Q |
| |
|
|||||| || ||||| |||| |||| ||||| |||||||| |||| ||||| || || ||| ||||| ||||||| ||||| ||||||||||||| |
|
|
| T |
31161787 |
attctcttacagaagaattagaaaaacatttacttttggattcggttgatgatgtgcgggttgtaggagtttgtgggatgggtggaatagggaaga |
31161692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 31489633 - 31489760
Alignment:
| Q |
123 |
cttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagacagcccttgctatgactttgtatggccaaatatctc |
222 |
Q |
| |
|
||||||||||| ||||| || ||| ||| ||||||||||||| ||||| ||||||||||||||| | || |||| |||| ||||| ||||| |||| |
|
|
| T |
31489633 |
cttttggactccattgatgatgttcgggttgtaggaatttgtgggatgggtggaatagggaagacaactctggctactgctttatatggtcaaatctctc |
31489732 |
T |
|
| Q |
223 |
atcgatttagtgcatcctgttttattga |
250 |
Q |
| |
|
||| |||| |||| ||||||||||| |
|
|
| T |
31489733 |
atcaatttgatgcacgttgttttattga |
31489760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 31245019 - 31245104
Alignment:
| Q |
102 |
gaagcattacaaaatcatttgcttttggactcggatgatggtgctcgtgttataggaatttgtggaatgggaggaatagggaagac |
187 |
Q |
| |
|
|||| |||| |||| | |||| || ||||||| ||||||| || ||| || |||| |||||||||||||| |||||||||||||| |
|
|
| T |
31245019 |
gaagaattagaaaagcttttgattatggactcagatgatgatgttcgagtggtagggatttgtggaatgggtggaatagggaagac |
31245104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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