View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4208_low_7 (Length: 225)

Name: NF4208_low_7
Description: NF4208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4208_low_7
NF4208_low_7
[»] chr1 (1 HSPs)
chr1 (13-218)||(12666203-12666408)
[»] chr7 (1 HSPs)
chr7 (13-218)||(667905-668110)
[»] chr6 (2 HSPs)
chr6 (13-86)||(21914081-21914154)
chr6 (89-168)||(21913891-21913970)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 12666408 - 12666203
Alignment:
Q  13 aaagggaaaagggactagacagaacggagagagaagaggagaaggaagatgaaggaaattgattttgaattggaattggatttagggttagggtatggag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12666408 aaagggaaaagggactagacagaacggagagagaagaggagaaggaagatgaaggaaattgattttgaattggaattggatttagggttagggtatggag 12666309  T
Q  113 tggaggtgcgtggtgtaacgaagctacagtgcggttggtgttggtagtggtggtggttatgaagatttatgtgatattgttgtttgtgatggtgttgttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||    
T  12666308 tggaggtgcgtggtgtaacgaagctacagtgcggttggtgttggtagtggtggtggtgatgaagatttatgtgatattgttgttggtgatgttgttgttg 12666209  T
Q  213 ttgatg 218  Q
    ||||||    
T  12666208 ttgatg 12666203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 667905 - 668110
Alignment:
Q  13 aaagggaaaagggactagacagaacggagagagaagaggagaaggaagatgaaggaaattgattttgaattggaattggatttagggttagggtatggag 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  667905 aaagggaaaagggactagacagaacggagagagaagaggagaaggaagatgaaggaaattgattttgaattggaattggaattagggttagggtatggag 668004  T
Q  113 tggaggtgcgtggtgtaacgaagctacagtgcggttggtgttggtagtggtggtggttatgaagatttatgtgatattgttgtttgtgatggtgttgttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||    
T  668005 tggaggtgcgtggtgtaacgaagctacagtgcggttggtgttgatagtggtggtggtgatgaagatttatgtgatattgttgttggtgatgttgttgttg 668104  T
Q  213 ttgatg 218  Q
    ||||||    
T  668105 ttgatg 668110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 21914154 - 21914081
Alignment:
Q  13 aaagggaaaagggactagacagaacggagagagaagaggagaaggaagatgaaggaaattgattttgaattgga 86  Q
    |||||||||||||| || | ||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  21914154 aaagggaaaagggagtaaagagaacggagagagaatagaagaaggaagatgaaggaaattgattttgaattgga 21914081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 21913970 - 21913891
Alignment:
Q  89 tggatttagggttagggtatggagtggaggtgcgtggtgtaacgaagctacagtgcggttggtgttggtagtggtggtgg 168  Q
    |||| ||||||||||||| |||||||| ||||||||||| |||| ||  || ||| ||  ||||||||| ||||||||||    
T  21913970 tggagttagggttagggtttggagtggtggtgcgtggtggaacggagagacggtgggggcggtgttggtggtggtggtgg 21913891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University