View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4209_high_13 (Length: 225)
Name: NF4209_high_13
Description: NF4209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4209_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 53089272 - 53089063
Alignment:
| Q |
19 |
tgtttctcatgtgatgttacctcaaggtgttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttatcggaggt |
118 |
Q |
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| T |
53089272 |
tgtttctcatgtgatgttacctcaaggtgttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttataggaggt |
53089173 |
T |
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| Q |
119 |
attttttcaaggaaaaagggaactagccaagaagttccatg-----------------atgaattttagcgagtataagtatgctatatgcattacatta |
201 |
Q |
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| T |
53089172 |
attttttcaaggaaaaagggaactagccaagaagttccatgatgagtgacgagtttgtatgaattttagcgagtataagtatgctatatgcatcacatta |
53089073 |
T |
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| Q |
202 |
ccagaataat |
211 |
Q |
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| T |
53089072 |
ccagaataat |
53089063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 3e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 14333951 - 14333826
Alignment:
| Q |
40 |
tcaaggtgttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttatcggaggtattttttcaaggaaaaaggga |
139 |
Q |
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| T |
14333951 |
tcaaggtgttgagaagttggaaaggcacccttctcttaggaagaagaagaagaagtcattgattccacttattggaggcatattttctaggaaaaaggga |
14333852 |
T |
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| Q |
140 |
actagccaagaagttccatgatgaat |
165 |
Q |
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| T |
14333851 |
actaaccaagaagttccatgatgaat |
14333826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 14333814 - 14333763
Alignment:
| Q |
160 |
atgaattttagcgagtataagtatgctatatgcattacattaccagaataat |
211 |
Q |
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| T |
14333814 |
atgaattttagcgagtataagtatgcttcatgcattacattaccagattaat |
14333763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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