View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4209_high_9 (Length: 281)
Name: NF4209_high_9
Description: NF4209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4209_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 263
Target Start/End: Original strand, 48487046 - 48487294
Alignment:
| Q |
15 |
cctgtgctttccatttttcgaataaccgaaaaacataacacaaattgcatcgggaacacaacatctaagaacagactcaggagcttgtaaaataggatca |
114 |
Q |
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| T |
48487046 |
cctgtgctttccatttttcgaataaccgaaaaacataacacaaattgcatcgggaacacaacgtctaagaacagactcaggagcttgtgaaataggatca |
48487145 |
T |
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| Q |
115 |
atgacaacagcaggccatgccggaaaagtcttgccacattttgcccaaacaatatcacccaaatgaaaatccactagtttgaaaatctctttcccttttt |
214 |
Q |
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| T |
48487146 |
atgacaacagcaggccatgccggaaaagtcttgccacattttgcccaaacaatatcacccaaatgaaaatccactagtttgaaaatctctttcccttttt |
48487245 |
T |
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| Q |
215 |
tacccttttcatcaaaacaatttccactctccactttaaccaataacat |
263 |
Q |
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| T |
48487246 |
tacccttttcatcaaaacaatttccactctccgctttaaccaataacat |
48487294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 177
Target Start/End: Complemental strand, 10032725 - 10032571
Alignment:
| Q |
23 |
ttccatttttcgaataaccgaaaaacataacacaaattgcatcgggaacacaaca-tctaagaacagactcaggagcttgtaaaataggatcaatgacaa |
121 |
Q |
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| T |
10032725 |
ttccatttttcgaataaccgaaaaacatcacacaaagtgtatccggaacacaacagtcgatg-acggattgaggagcctctgagagaggatcaatcacca |
10032627 |
T |
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| Q |
122 |
cagcaggccatgccggaaaagtcttgccacattttgcccaaacaatatcacccaaa |
177 |
Q |
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| T |
10032626 |
caccgggccaagccggaaacctcttcccgcatttcgcccaaacaatatcacccaaa |
10032571 |
T |
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