View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4209_low_11 (Length: 265)
Name: NF4209_low_11
Description: NF4209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4209_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 37447521 - 37447766
Alignment:
| Q |
1 |
cgttacattaattgtgaagatattttaagaactagcctaacgaattagtagcagcatgatagtatgtgatttgattcaatgtatttgtataagttttaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37447521 |
cgttacattaattgtgaagatattttaagaactagcctaacgaattagtagca---tgatagtatgtgatttgattcaatgtatttgtaaaagttttaca |
37447617 |
T |
|
| Q |
101 |
tagcacttaatcactatatttattcatttattacatttgcagtgagggctgttctttttggtttgtacaaaagtgttttcgcaattagaccaaaggtatt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37447618 |
tagcacttaatctctatatttattcatttattacatttgcagtgagggctgttctttttggtttgtacaaaagtgttttcgcaattagaccaaaggtatt |
37447717 |
T |
|
| Q |
201 |
ttcctattctcatatctaaaataagaagtcagttcataaagaaatacat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37447718 |
ctcctattctcatatctaaaataagaagtcagttcataaagaaatacat |
37447766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University