View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4209_low_2 (Length: 464)
Name: NF4209_low_2
Description: NF4209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4209_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 42665641 - 42666083
Alignment:
| Q |
18 |
tgaatctaatgattttttatctcaaaattaatctaaaccatatctcacatgaatatccaaattacttattgctaaataaaaaattatttaccgacagctt |
117 |
Q |
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| T |
42665641 |
tgaatctaatgattttttatctcaaaattaatctaaaccatatctcacatgaatatccaaattacttattgctaaataaaaaattatttaccgacagctt |
42665740 |
T |
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| Q |
118 |
ttgccttttgataattcgatttactgacaatttatggtcgacacatgagcatttgccctcagcatccaccctagaagagttttttagtgttacagatctg |
217 |
Q |
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| T |
42665741 |
ttgccttttgataattcgatttactgacaatttatggtcgacacatgagcatttgctctcagcatccaccctagaagagttttttagtgttacagatctg |
42665840 |
T |
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| Q |
218 |
aactttcctacactttgggaagctagccacctttttccttgattggttaagtgatttgattgaacaatcttcatatcattccattccattttttcctttt |
317 |
Q |
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| T |
42665841 |
aactttcctacactttgggaagctagccacctttttccttgattggttaagtgatttgattgaacaatcttcatatcattccattccattttttcctttt |
42665940 |
T |
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| Q |
318 |
catcttcccagccaagatagaggttgaaaatggttccctcatttttggaaatgtttttctcctttatgtcactctgaacatctttcctcaacctgaaatc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42665941 |
catcttcccagccaagatagaggttgaaaatggttccctcatttttggaaatgtttttctcctttatgtcactctaaacatctttcctcaacctgaaatc |
42666040 |
T |
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| Q |
418 |
ttcacatgataagatcaacattcattattttctttcctttcat |
460 |
Q |
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| T |
42666041 |
ttcacatgataagatcaacattcattattttctttcctttcat |
42666083 |
T |
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