View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4209_low_4 (Length: 435)

Name: NF4209_low_4
Description: NF4209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4209_low_4
NF4209_low_4
[»] chr8 (9 HSPs)
chr8 (17-426)||(15805535-15805944)
chr8 (319-430)||(15697845-15697956)
chr8 (319-427)||(15712270-15712378)
chr8 (329-430)||(15704242-15704343)
chr8 (17-89)||(15764554-15764626)
chr8 (320-427)||(15813712-15813819)
chr8 (323-415)||(15800277-15800369)
chr8 (319-430)||(15722872-15722983)
chr8 (19-67)||(15800005-15800053)
[»] chr3 (2 HSPs)
chr3 (319-427)||(3093993-3094101)
chr3 (319-427)||(3080117-3080225)


Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 15805535 - 15805944
Alignment:
Q  17 tctccaatctatgtgcttatgcttttccttatctgtcaagtagaggaacattgaattcatgttagtgataataacaatagcgatggatggatactatcat 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  15805535 tctccaatctatgtgcttatgcttttccttatctgtcaagtagaggaatattgaattcatgttagtgataataacgatagcaatggatggatactatcat 15805634  T
Q  117 tcatttttatcttcatagttgttttacaggaataatcactggatataatattgtaattatgctccaaaatgcataatatgctcaggaatgattaatcaaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15805635 tcatttttatcttcatagttgttttacaggaataatcactggatataatattgtaattatgctccaaaatgcataatatgcccaggaatgattaatcaaa 15805734  T
Q  217 taatcactggatatgataattatactttaataattagaacatacagtaacttctaaaattagtactaaattggaaaaagtaaaagacagaatcattaaag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15805735 taatcactggatatgataattatactttaataattagaacatacagtaacttctaaaattagtactaaattggaaaaagtaaaagacagaatcattaaag 15805834  T
Q  317 caaaaacataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagtttc 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15805835 caaaaacataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagtttc 15805934  T
Q  417 acgaggtttc 426  Q
    ||||||||||    
T  15805935 acgaggtttc 15805944  T

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Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 319 - 430
Target Start/End: Original strand, 15697845 - 15697956
Alignment:
Q  319 aaaacataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagtttcac 418  Q
    ||||||||||||||||||||||||| |||||||||||  ||| |||||||||||| ||||| ||||||||| | || |||||||| ||||||||| ||||    
T  15697845 aaaacataccgaaaaggtgaaagtcaaggcttgaattcggcatgtattcatatactagtatcttttcatttccttcaatgcagcaacccaagagtctcac 15697944  T
Q  419 gaggtttctgtg 430  Q
    ||||||||||||    
T  15697945 gaggtttctgtg 15697956  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 319 - 427
Target Start/End: Original strand, 15712270 - 15712378
Alignment:
Q  319 aaaacataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagtttcac 418  Q
    ||||||||| |||||||||||||||||||||||||||||||| ||| || ||||| ||||| ||||||||||  || | ||| || ||||||||||||||    
T  15712270 aaaacatactgaaaaggtgaaagtcgaggcttgaattttgcatgtactcgtatactagtatcttttcattttgttcaaagcaacaacccaagagtttcac 15712369  T
Q  419 gaggtttct 427  Q
    |||||||||    
T  15712370 gaggtttct 15712378  T

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Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 329 - 430
Target Start/End: Original strand, 15704242 - 15704343
Alignment:
Q  329 gaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagtttcacgaggtttctg 428  Q
    ||||||||||||||| |||||||||||| ||   || |||||||| ||||| |||||  ||||||| |||||||| || |||||||||||||||||||||    
T  15704242 gaaaaggtgaaagtcaaggcttgaatttggcttatagtcatatactagtatcttttcgctttcctcaatgcagcaacctaagagtttcacgaggtttctg 15704341  T
Q  429 tg 430  Q
    ||    
T  15704342 tg 15704343  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 15764554 - 15764626
Alignment:
Q  17 tctccaatctatgtgcttatgcttttccttatctgtcaagtagaggaacattgaattcatgttagtgataata 89  Q
    |||||||||||  ||||||||||||||||||||||||||| ||||||||||||  ||||||||| ||||||||    
T  15764554 tctccaatctagatgcttatgcttttccttatctgtcaagcagaggaacattgttttcatgttattgataata 15764626  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 320 - 427
Target Start/End: Original strand, 15813712 - 15813819
Alignment:
Q  320 aaacataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagtttcacg 419  Q
    |||||||| ||||||||||||||  |||||||||||| |||  || |||||||| ||||| ||||||||||| || | |||||| || |||||||||||     
T  15813712 aaacatactgaaaaggtgaaagttaaggcttgaatttggcatatactcatatactagtatcttttcattttcttcaaagcagcaacctaagagtttcaca 15813811  T
Q  420 aggtttct 427  Q
    ||||||||    
T  15813812 aggtttct 15813819  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 415
Target Start/End: Original strand, 15800277 - 15800369
Alignment:
Q  323 cataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagttt 415  Q
    ||||| ||||||||||||||| |||||||||||  ||| ||| |||||||| ||||||||||||| | |||| |||||| | |||||||||||    
T  15800277 catactgaaaaggtgaaagtcaaggcttgaattcggcatgtactcatatactagtattttttcatctccctcaatgcagtaacccaagagttt 15800369  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 430
Target Start/End: Original strand, 15722872 - 15722983
Alignment:
Q  319 aaaacataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagtttcac 418  Q
    ||||| ||| |||||| |||||||| || ||||||||| ||| ||| |||||||| | ||| ||||||||||| || |||||||| || || || |||||    
T  15722872 aaaacttactgaaaagatgaaagtcaagacttgaatttggcatgtactcatatactaatatcttttcattttcttcaatgcagcaacctaatagcttcac 15722971  T
Q  419 gaggtttctgtg 430  Q
     ||||| |||||    
T  15722972 aaggttcctgtg 15722983  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 15800005 - 15800053
Alignment:
Q  19 tccaatctatgtgcttatgcttttccttatctgtcaagtagaggaacat 67  Q
    |||||||||  |||||||| ||||||| |||||||| ||||||||||||    
T  15800005 tccaatctagatgcttatgtttttcctcatctgtcacgtagaggaacat 15800053  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 427
Target Start/End: Complemental strand, 3094101 - 3093993
Alignment:
Q  319 aaaacataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagtttcac 418  Q
    |||||||||| || || |||||||| ||||| || ||| ||| ||||||||||||||| |  |||||||| ||||| ||||| || ||||| ||| ||||    
T  3094101 aaaacataccaaatagatgaaagtcaaggctagagtttggcatgtattcatatacaagcaacttttcattatcctcaatgcaacaacccaaaagtctcac 3094002  T
Q  419 gaggtttct 427  Q
     ||||||||    
T  3094001 aaggtttct 3093993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 427
Target Start/End: Complemental strand, 3080225 - 3080117
Alignment:
Q  319 aaaacataccgaaaaggtgaaagtcgaggcttgaattttgcaagtattcatatacaagtattttttcattttcctccatgcagcagcccaagagtttcac 418  Q
    |||||||||| || || |||||||| ||||| || ||| ||| ||||||||||||||| |  |||||||| || || ||||| || ||||| ||| ||||    
T  3080225 aaaacataccaaatagatgaaagtcaaggctagagtttggcatgtattcatatacaagcaacttttcattatcttcaatgcaacaacccaaaagtctcac 3080126  T
Q  419 gaggtttct 427  Q
     ||||||||    
T  3080125 aaggtttct 3080117  T

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