View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4209_low_7 (Length: 400)
Name: NF4209_low_7
Description: NF4209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4209_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 7 - 392
Target Start/End: Original strand, 12841088 - 12841472
Alignment:
| Q |
7 |
tttcttatatttgtcaccattgttatgattcaatctagctaatattctatacgtttgagtnnnnnnncaattatttctacattgatgaatgtactgaata |
106 |
Q |
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| T |
12841088 |
tttcttatatttgtcaccattgttatgattcaatctagctaatattctatacgtttgagtaaaaaaacaattatttctacgttgatgaatgtactgaata |
12841187 |
T |
|
| Q |
107 |
ttttagaaatattattgaataat-aatccaagtataaaggggtttaattatatcacaaggaaataaacccattcaaaataactaactatcaataatcttc |
205 |
Q |
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| T |
12841188 |
ttttagaaatattattgaataatcaatccaagtacaaaggggtttaattatatcacaaggaaataaacccattcaaaataactaactatcaataatcttc |
12841287 |
T |
|
| Q |
206 |
tacctaattaaccgacttgaataatagacttctcatctaattaagtttgacttagtcaaactaaaactaagtagtattattcaacataaag--tatatat |
303 |
Q |
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| T |
12841288 |
tacctaattaaccgacttgaataaatgactgctcatctaattaagtttgacttagtcaaactaaaacta---agtattattcaacataaagtatatatat |
12841384 |
T |
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| Q |
304 |
aggtcaattactctctttattttgacgagaattagataaatgagtttaaactaagaatatatgctttgtcctctctctcatttcatttc |
392 |
Q |
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| T |
12841385 |
aggtcaattgctctctttattttgacgagaattagataaatgagtttaaactaagaatat-tgctttgtcttctctctcatttcatttc |
12841472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 7 - 316
Target Start/End: Original strand, 12842415 - 12842724
Alignment:
| Q |
7 |
tttcttatatttgtcaccattgttatgattcaatctagctaatattctatacgtttgagtnnnnnnncaat------tatttctacattgatgaatgtac |
100 |
Q |
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| T |
12842415 |
tttcttatatttgtcaccatttttatgattcaatctatctaatatt-tatacgtttgagtaaaaaaaaaaaaaacaatatttctacgttgatgaatgtat |
12842513 |
T |
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| Q |
101 |
tgaatattttagaaatattattgaataat-aatccaagtataaaggggtttaattatatcacaaggaaataaacccattcaaaataactaactatcaata |
199 |
Q |
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| T |
12842514 |
tgaatattttagaaatattattgattaatcaatctacgtacaaaggggtttatgtatgtcacaaggtaataaacccattcaaaa----taacaatcagta |
12842609 |
T |
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| Q |
200 |
atcttctacctaattaaccgacttgaataatagacttctcatctaattaagtttgacttagtcaaactaaaactaagtagtattattcaacataaagtat |
299 |
Q |
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| T |
12842610 |
atcttcaaagtaaccaacagatttgaataaaagact--gtatttaattaactttaccttagtcaaactaaaactaagtactattattctacataatgtat |
12842707 |
T |
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| Q |
300 |
atataggtcaattactc |
316 |
Q |
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|||| |||||||||||| |
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| T |
12842708 |
atatgggtcaattactc |
12842724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 88 - 235
Target Start/End: Complemental strand, 12863006 - 12862861
Alignment:
| Q |
88 |
ttgatgaatgtactgaatattttagaaatattattgaat-aat-aatccaagtataaaggggtttaattatatcacaaggaaataaacccattcaaaata |
185 |
Q |
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| T |
12863006 |
ttgatgaatgtactaaatattttagaaatattattgaattaatcaatccaagtacaaaggggtttatgcatgtcacaaggtaataaacccattcaaaata |
12862907 |
T |
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| Q |
186 |
actaactatcaataatcttctacctaattaaccgacttgaataatagact |
235 |
Q |
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| T |
12862906 |
----actatcagtaatcttcaaagtaactaaccgaattgaataaaagact |
12862861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 340 - 390
Target Start/End: Original strand, 13124807 - 13124857
Alignment:
| Q |
340 |
taaatgagtttaaactaagaatatatgctttgtcctctctctcatttcatt |
390 |
Q |
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|||| |||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
13124807 |
taaaggagtttaaactaagaatatatgctttgttttctctgtcatttcatt |
13124857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 316
Target Start/End: Complemental strand, 12862804 - 12862755
Alignment:
| Q |
267 |
taaaactaagtagtattattcaacataaagtatatataggtcaattactc |
316 |
Q |
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| T |
12862804 |
taaaactaagcaatattattcaacataaagtagatatgggtcaattactc |
12862755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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