View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4209_low_8 (Length: 358)
Name: NF4209_low_8
Description: NF4209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4209_low_8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 358
Target Start/End: Complemental strand, 53674485 - 53674138
Alignment:
| Q |
11 |
cagagatgaatcaacagaacagttcacctagaacagtacttctagatggactactagagggacaatccaacagcacagaagatgacacatttagcactag |
110 |
Q |
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| T |
53674485 |
cagaaatgaatcaacagaacagttcacctagaacagtacttctagatggactactagagggacaatccaacagcacagaagatgacacatttagcactag |
53674386 |
T |
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| Q |
111 |
agcatcaagcatgacatatacaccttcatctggtcctaagattaagagaaaatcacaattatcattcaggttcataatttcgtttcttggttcaccattc |
210 |
Q |
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| T |
53674385 |
agcatcaagcttgacatatacaccttcatctggtcctaagattaagagaaaatcacaattatcattcaggttcataatatcgtttcttggttcaccattc |
53674286 |
T |
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| Q |
211 |
agaataaaaaccttcaacatgtccaaaattgaaaaacatcaacccttgttgaagtgcttcagctatgaaaatatatcaaatgctactaatgactttcacc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53674285 |
agaataaaaaccttcaacatgtccaaaattgaaaaacatcaacccttgttgaattgcttcagctatgaaaatatatcaaatgctactaatgactttcacc |
53674186 |
T |
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| Q |
311 |
aaggtatataattaatcttatttttaatgtcatatgaaacattgaatt |
358 |
Q |
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| T |
53674185 |
aaggtatattattaatgttatttttaatgtcatatgaaacattgaatt |
53674138 |
T |
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