View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4210_low_1 (Length: 503)
Name: NF4210_low_1
Description: NF4210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4210_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 33229202 - 33228718
Alignment:
| Q |
18 |
cacattctgcggtgccacgcgtcgttatcatctgtcatatttagcaacagtatatcatactctctctgtcgcacaataattgtcgca-tttgaccatttc |
116 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33229202 |
cacattctgctgtgccacgcgtcgttatcatctgtcatatttagcaacagtatatcatactctctctgtcgcacaataattgtcgcattttgaccatttc |
33229103 |
T |
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| Q |
117 |
atacagattaataaaagatgatagacggaagaaacaagatggtgattttactaaattatccttattaaccggtagaannnnnnnattattatcataaatg |
216 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33229102 |
atacagattaataaaagatgatagaccaaagagacaagatggtgattttactaaattatccttattaaccggtagaattttttttttattatcataaatg |
33229003 |
T |
|
| Q |
217 |
caaagtataaaataacaacttaaatgacattgacaactaacctgacaagaaatcctcttcaggacagagaagtctggtttgaaagaaatctgagtctgaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33229002 |
caaagtataaaataacaacttaaatgacattgacaactaacctgacaagaaatcctcttcaggacagagaagtctggtttgaaagaaatctgagtctgaa |
33228903 |
T |
|
| Q |
317 |
aacaattaaattgcacaataaaata--nnnnnnnnnnnnacattatataaataatataaagtaagttgcaaaacttattaaaatgtataagtggaaaggt |
414 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33228902 |
aacaattaaattgcacaataaaatatgtgtgtgtgtgtgacattatataaataatataaagtaagttgcaaaacttattaaaatgtataagt-gaaaggt |
33228804 |
T |
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| Q |
415 |
taattaattacgttaagtccagaattagttgcagaagtctgagttgatgcagagatgatgttggagacaagtttgaaaagggtatc |
500 |
Q |
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| T |
33228803 |
taattaattacgttaagtccagaattagttccagaagtctgagttgatgcagagatgatgttggagacaaggttgaaaagggtatc |
33228718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 6552123 - 6552241
Alignment:
| Q |
68 |
tatatcatactctctctgtcgcacaataattgtcgcatttgaccatttcatacagattaataaaagatgatagacggaagaaacaagatggtgattttac |
167 |
Q |
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||||| |||||| || |||| | |||||| |||| ||||||||||||||| ||||||||| ||||||||| | | | |||||| | ||||||||| ||| |
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| T |
6552123 |
tatattatactccctttgtccctcaataactgtcacatttgaccatttcacacagattaagaaaagatgacaaatgaaagaaagagaatggtgattgtac |
6552222 |
T |
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| Q |
168 |
taaattatccttattaacc |
186 |
Q |
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|| |||||||||||||||| |
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| T |
6552223 |
tatattatccttattaacc |
6552241 |
T |
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