View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4210_low_2 (Length: 290)
Name: NF4210_low_2
Description: NF4210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4210_low_2 |
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| [»] scaffold0451 (1 HSPs) |
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| [»] scaffold0638 (1 HSPs) |
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Alignment Details
Target: scaffold0451 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 33 - 278
Target Start/End: Original strand, 6735 - 6980
Alignment:
| Q |
33 |
agacgataaacagggattgcaattagatgattggctctaggcatagtaacaccaaatgcctctgtcatgtccaaatcacttggtaacatatcattaggca |
132 |
Q |
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| T |
6735 |
agacgataaacagggattgcaattagatgattggctctaggcatagtaacaccaaatgattctgtcatgtccaagtcacttggtaacatatcattaggca |
6834 |
T |
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| Q |
133 |
atttaaattcaaagcaatgcacaatttgggccaccaccaaacgcaccatagttagacctaattgcaatccaggacaaccccttcttccagagctaaatgg |
232 |
Q |
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| T |
6835 |
atttaaaatcaaagcaatgcacaagttgggctaccgccaaacgcaccatagttagacctaattgcaatccaggacatccccttcttccagagccaaatgg |
6934 |
T |
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| Q |
233 |
tataagctgaaagtgttgccctccaacatctatgttgtttccttca |
278 |
Q |
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| T |
6935 |
tataagatgaaagtgttgccctccaacatctatgttgtttccttca |
6980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 7161 - 6901
Alignment:
| Q |
18 |
atctatcacacctaaagacgataaacagggattgcaattagatgattggctctaggcatagtaacaccaaatgcctctgtcatgtccaaatcacttggta |
117 |
Q |
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| T |
7161 |
atctatcacgcctaataacgataaacagggattgcaattagatgattggctctacgcatagtaacaccaaatgcctctgccatgtccaaatcacttggta |
7062 |
T |
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| Q |
118 |
acatatcattaggcaatttaaattcaaagcaatgcacaatttgggccaccaccaaacgcaccatagttagacctaattgcaatccaggacaaccccttct |
217 |
Q |
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| T |
7061 |
acatatgattaggcaatttaaaatcaaagcaatgcacaagttgggctaccaccaaacgcaccatagttagacccaattgcaatccaggacatccccttct |
6962 |
T |
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| Q |
218 |
tccagagctaaatggtataagctgaaagtgttgccctccaacatctatgttgtttccttca |
278 |
Q |
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| T |
6961 |
tccagagctaaatggtataagttgaaaatcatgtcctccaacatctatgttgtttccttca |
6901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 278
Target Start/End: Complemental strand, 27413704 - 27413456
Alignment:
| Q |
30 |
taaagacgataaacagggattgcaattagatgattggctctaggcatagtaacaccaaatgcctctgtcatgtccaaatcacttggtaacatatcattag |
129 |
Q |
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| T |
27413704 |
taaagacgataaacaggaagtgcaatcaaatgattggctctaggcatagtaataccaaatgcctcagtcatgtccaaatcacttggtaacatatcattag |
27413605 |
T |
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| Q |
130 |
gcaatttaaattcaaagcaatgcacaatttgggccaccaccaaacgcaccatagttagacctaattgcaatccaggacaaccccttcttccagagctaaa |
229 |
Q |
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| T |
27413604 |
gtaatttcaaatcaaagcaatgcacaatttgggccaccaccaaacgcaccatagttagacccaaatgcaatccaggacaaccccttcttccagagccaaa |
27413505 |
T |
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| Q |
230 |
tggtataagctgaaagtgttgccctccaacatctatgttgtttccttca |
278 |
Q |
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| T |
27413504 |
tggtataagctgaaagtcatgtcctccaacatctatgttgtttccttca |
27413456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 31 - 278
Target Start/End: Complemental strand, 38260356 - 38260109
Alignment:
| Q |
31 |
aaagacgataaacagggattgcaattagatgattggctctaggcatagtaacaccaaatgcctctgtcatgtccaaatcacttggtaacatatcattagg |
130 |
Q |
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| T |
38260356 |
aaagacgataagcagggatggcaattagattattggctctaggcatagtaagaccaaaatcctctgtcatatccaaatcacttggtaacatatgattagg |
38260257 |
T |
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| Q |
131 |
caatttaaattcaaagcaatgcacaatttgggccaccaccaaacgcaccatagttagacctaattgcaatccaggacaaccccttcttccagagctaaat |
230 |
Q |
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| T |
38260256 |
caatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttagacctaattgtaatccaggacaacctcttctacctgagccaaat |
38260157 |
T |
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| Q |
231 |
ggtataagctgaaagtgttgccctccaacatctatgttgtttccttca |
278 |
Q |
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| T |
38260156 |
ggtatgagctgaaaatcacgtcctttaacatctatattgtttccttca |
38260109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 59 - 244
Target Start/End: Complemental strand, 38263299 - 38263114
Alignment:
| Q |
59 |
atgattggctctaggcatagtaacaccaaatgcctctgtcatgtccaaatcacttggtaacatatcattaggcaatttaaattcaaagcaatgcacaatt |
158 |
Q |
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| T |
38263299 |
atgatttgccctaggcatagtaagtccaaactcctctgtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagt |
38263200 |
T |
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| Q |
159 |
tgggccaccaccaaacgcaccatagttagacctaattgcaatccaggacaaccccttcttccagagctaaatggtataagctgaaa |
244 |
Q |
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| T |
38263199 |
tgagccaccaccaaacgaatcacagttaggcctaattgcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaa |
38263114 |
T |
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