View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4210_low_3 (Length: 255)
Name: NF4210_low_3
Description: NF4210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4210_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 48455634 - 48455870
Alignment:
| Q |
1 |
tggccggctggtggaggctgcttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggttgtaggaaactcc |
100 |
Q |
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| T |
48455634 |
tggccggctggtggaggttgcttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggttgtaggaaactcc |
48455733 |
T |
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| Q |
101 |
caatcgaagtcgattccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaatgtagcacgtgccgtggggtcagaggcgatgaaagcaa |
200 |
Q |
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| T |
48455734 |
caatcgaagtcgattccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaaggtagcacgtgccgtggggtcagaggcaatgaaagcaa |
48455833 |
T |
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| Q |
201 |
agagtgtggaattgctagttgcacctccaatggaaag |
237 |
Q |
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| T |
48455834 |
agagtgtggaattgctagttgcacctccaatggaaag |
48455870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 48461090 - 48461325
Alignment:
| Q |
1 |
tggccggctggtggaggctgcttcgtcggaaattgctcttcgccattggaaaagcaattctccaaggtcattcatttcttttgtggttgtaggaaactcc |
100 |
Q |
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|||||||| ||||| ||| |||| ||||| || ||| ||||||||||||| |||| |||||| ||||| ||||||||||| ||| || ||||||||||| |
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| T |
48461090 |
tggccggccggtggtggcgccttcatcggagatagcttttcgccattggaagagcatttctccgaggtcgttcatttctttagtgtttttaggaaactcc |
48461189 |
T |
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| Q |
101 |
caatcgaagtcgattccatcgaatccaaaggttcgagcgacttggattgtagagttgatgaatgtagcacgtgccgtggggtcagaggcgatgaaagcaa |
200 |
Q |
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| T |
48461190 |
caatccaagtcaattccatcgaatccaaatgtacgagcaacgtcgattgtagagttaatgaaggcggcacatgcgggtggatcggaggcgatgaaggcca |
48461289 |
T |
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| Q |
201 |
agagtgtggaattgctagttgcacctccaatggaaa |
236 |
Q |
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| T |
48461290 |
acaaggatgaattgctacctgcacctccaatggaaa |
48461325 |
T |
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