View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4210_low_4 (Length: 250)
Name: NF4210_low_4
Description: NF4210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4210_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 125
Target Start/End: Complemental strand, 34664420 - 34664324
Alignment:
| Q |
29 |
cagtgcttgaaatatttgtttgaggacgaaaacatacgcaaatccaattttgaaaacatagagttaaataagtttttgatccttgtaaattatcaaa |
125 |
Q |
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| T |
34664420 |
cagtgcttgaaatatttgtttgaggacgaaaacatacgtaaatccaattttgaaaacatagatttaaataagttcttggtccttgtaaattatcaaa |
34664324 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 34644995 - 34644932
Alignment:
| Q |
100 |
gtttttgatccttgtaaattatcaaattttgttttgagtcctcgtaaaataattgcatcttgca |
163 |
Q |
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| T |
34644995 |
gtttttgatccttgtaaattatcaaattttgttttgagtcctcgtaaaataattgcatcttgca |
34644932 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 23439434 - 23439488
Alignment:
| Q |
87 |
tagagttaaataagtttttgatccttgtaaat-tatcaaattttgttttgagtcc |
140 |
Q |
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| T |
23439434 |
tagagttaaataagtttttgatccttgtaaatgtaataaattttgtttttagtcc |
23439488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 148
Target Start/End: Complemental strand, 11692626 - 11692566
Alignment:
| Q |
88 |
agagttaaataagtttttgatccttgtaaattatcaaattttgttttgagtcctcgtaaaa |
148 |
Q |
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| T |
11692626 |
agagttaaataagtttttgatctctataatataacaaattttgtttttagtcctcgtaaaa |
11692566 |
T |
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