View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4210_low_5 (Length: 228)

Name: NF4210_low_5
Description: NF4210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4210_low_5
NF4210_low_5
[»] chr7 (3 HSPs)
chr7 (36-212)||(5951421-5951597)
chr7 (65-107)||(28138756-28138798)
chr7 (32-105)||(12084584-12084657)
[»] chr8 (2 HSPs)
chr8 (109-188)||(3510069-3510148)
chr8 (110-199)||(27076641-27076734)
[»] chr4 (2 HSPs)
chr4 (28-88)||(26184135-26184195)
chr4 (65-104)||(54208180-54208219)
[»] chr1 (1 HSPs)
chr1 (63-105)||(31206851-31206893)
[»] scaffold0457 (1 HSPs)
scaffold0457 (60-105)||(6000-6045)
[»] scaffold0005 (1 HSPs)
scaffold0005 (27-103)||(269110-269186)
[»] chr6 (1 HSPs)
chr6 (65-105)||(2559658-2559698)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 36 - 212
Target Start/End: Original strand, 5951421 - 5951597
Alignment:
Q  36 ttcacgcatgggcaatttcgaaaattcacttgggaacgagcaaaatcatttggataaagagcataattctaatagttgttaggaaacaaacaatttaaga 135  Q
    |||||| |||| ||||||| ||||||||| || |||| | |||||| ||||||||||||| ||||||| |||  |||||||| |||||||||||||||||    
T  5951421 ttcacgtatggacaatttcaaaaattcacatgagaacaaacaaaatgatttggataaagaacataattttaaccgttgttagaaaacaaacaatttaaga 5951520  T
Q  136 ctatttatcactcataatgccataattatattagcattatgaaagaaggaaatcgtggactctagttttatctcaca 212  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5951521 ctatttatcagtcataatgccataattatattagcattatgaaagaaggaaatcgtagactctagttttatctcaca 5951597  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 28138798 - 28138756
Alignment:
Q  65 ttgggaacgagcaaaatcatttggataaagagcataattctaa 107  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||    
T  28138798 ttgggaatgagcaaaatcatttgggtaaagagcagaattctaa 28138756  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 12084584 - 12084657
Alignment:
Q  32 ttaattcacgcatgggcaatttcgaaaattcacttgggaacgagcaaaatcatttggataaagagcataattct 105  Q
    |||| ||||||||||||| ||| | || |||| ||||||| || ||||| || |||||||||||||| ||||||    
T  12084584 ttaactcacgcatgggcattttaggaatttcaattgggaatgaacaaaaacagttggataaagagcagaattct 12084657  T

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Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 109 - 188
Target Start/End: Original strand, 3510069 - 3510148
Alignment:
Q  109 agttgttaggaaacaaacaatttaagactatttatcactcataatgccataattatattagcattatgaaagaaggaaat 188  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3510069 agttgttaggaaacaagcaatttaagactatttatcactcttaatgccataattatattagcattatgaaagaaggaaat 3510148  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 27076641 - 27076734
Alignment:
Q  110 gttgttaggaaacaaacaatttaagactatttatcactcataatgccataattata----ttagcattatgaaagaaggaaatcgtggactcta 199  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||     ||| ||| ||||||||||||||| ||||||||||    
T  27076641 gttgttaggaaacaagcaatttaagactatttatcactcataatgccataattattatatttaacatcatgaaagaaggaaattgtggactcta 27076734  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 26184195 - 26184135
Alignment:
Q  28 tgagttaattcacgcatgggcaatttcgaaaattcacttgggaacgagcaaaatcatttgg 88  Q
    |||||||| |||| |||||||| | | | ||||||||||||||||||||||||||| ||||    
T  26184195 tgagttaactcacacatgggcattatgggaaattcacttgggaacgagcaaaatcagttgg 26184135  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 54208219 - 54208180
Alignment:
Q  65 ttgggaacgagcaaaatcatttggataaagagcataattc 104  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  54208219 ttgggaatgagcaaaaccatttggataaagagcataattc 54208180  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 31206851 - 31206893
Alignment:
Q  63 acttgggaacgagcaaaatcatttggataaagagcataattct 105  Q
    ||||||||| |||||||| |||||||||||| |||||||||||    
T  31206851 acttgggaatgagcaaaaacatttggataaatagcataattct 31206893  T

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Target: scaffold0457 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 6000 - 6045
Alignment:
Q  60 ttcacttgggaacgagcaaaatcatttggataaagagcataattct 105  Q
    ||||| |||||| |||||||| | ||||||||||||||||||||||    
T  6000 ttcacatgggaatgagcaaaaacgtttggataaagagcataattct 6045  T

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Target: scaffold0005 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Complemental strand, 269186 - 269110
Alignment:
Q  27 gtgagttaattcacgcatgggcaatttcgaaaattcacttgggaacgagcaaaatcatttggataaagagcataatt 103  Q
    ||||||||| ||||||| ||||| ||| |  | |||||||||||| |||||||| | ||||| ||||||||| ||||    
T  269186 gtgagttaagtcacgcaggggcattttggtcatttcacttgggaatgagcaaaaacttttgggtaaagagcagaatt 269110  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 2559658 - 2559698
Alignment:
Q  65 ttgggaacgagcaaaatcatttggataaagagcataattct 105  Q
    |||||||||||||||||| ||||| ||||||||| ||||||    
T  2559658 ttgggaacgagcaaaatcgtttgggtaaagagcaaaattct 2559698  T

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