View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4211_high_1 (Length: 642)
Name: NF4211_high_1
Description: NF4211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4211_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 19 - 631
Target Start/End: Original strand, 131448 - 132060
Alignment:
| Q |
19 |
tcctcttcttatttccctagaaacaatgccgcccttctggaactcaggcattgcctcaaggaattgttgctaggacctctaacttggaaacacggccctt |
118 |
Q |
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| T |
131448 |
tcctcttcttatttccctagaaacaatgccgcccttctggaactcaggcattgcctcaaggaattgttgctaggacctctaacttggaaacacggccctt |
131547 |
T |
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| Q |
119 |
atgggacgactctgctgtaaataatgtatgctaaattctaaccaacttcacttcatgctctaatactgttagcgttatcttacataatatgttactttca |
218 |
Q |
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| T |
131548 |
atgggacgactctgctgtaaataatgtatgctaaattctaaccaacttcacttcatgctctaatactgttagcgttatcttacataatatgttactttca |
131647 |
T |
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| Q |
219 |
acagctttttgtctatagattagggactactatatttgtgcaatgtgcattaatttcctcttttttcaattgatgacatctacctggttcagagaatttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131648 |
acagctttttgtctatagattagggactactatatttgtgcaatgtgcattaatttcctcttttttcaattgatgacatctacctggttcagagaatttc |
131747 |
T |
|
| Q |
319 |
gaaccacccattgaatttgttggctatctcagtaggagttaagcaaaaagaagttgttgataaaatcgtcaaaaaggtgacggttgcttcacttatataa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131748 |
gaaccacccattgaatttgttggctatctcagtaggagttaagcaaaaagaagttgttgataaaatcgtcaaaaaggtgacggttgcttcacttatataa |
131847 |
T |
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| Q |
419 |
tttgactttgatctacagtttaaactcatatctgctgacttgtaccgctggtggcagttcccgtcaagtgattttgttgtgatgctttttcattatgatg |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131848 |
tttgactttgatctacagtttaaactcatatctgctgacttgtaccgctggtggcagttcccgtcaagtgattttgttgtgatgctttttcattatgatg |
131947 |
T |
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| Q |
519 |
gctttgtggatggatggaagaatttagcttggagtaatcgtgccatacatgtgtctgctataaatcaaacgaaatggtataataagctcatatgttaatt |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131948 |
gctttgtggatggatggaagaatttagcttggagtaatcgtgccatacatgtgtctgctataaatcaaacgaaatggtataataagctcatatgttaatt |
132047 |
T |
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| Q |
619 |
tgttttccctctg |
631 |
Q |
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| T |
132048 |
tgttttccctctg |
132060 |
T |
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