View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4211_high_10 (Length: 211)
Name: NF4211_high_10
Description: NF4211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4211_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 24 - 194
Target Start/End: Original strand, 6074266 - 6074436
Alignment:
| Q |
24 |
gacactgacacatgaacaccggtgataatctcagaaaataaattatataaacataatcacatgtgttggtatcggacacctgccacacctttgattagag |
123 |
Q |
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| T |
6074266 |
gacactgacacatgaacaccggtgataatctcagaaaataaattatataaacataatcacatgtgttggtatcggacacctgccacacctttgattagag |
6074365 |
T |
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| Q |
124 |
ttgttagtgctatggagggtgtaacaaattaggtttttgtttacttgatcttcctactactgatagtgcat |
194 |
Q |
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| T |
6074366 |
ttgttagtgctatggagggtgtaacaaattaggtttttgtttacttgatcttcctactactggtagtgcat |
6074436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 165
Target Start/End: Original strand, 6074519 - 6074640
Alignment:
| Q |
44 |
ggtgataatctcagaaaataaattatataaacataatcacatgtgttggtatcggacacctgccacacctttgattagagttgttagtgctatggagggt |
143 |
Q |
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| T |
6074519 |
ggtgataatttgagaaaatgaattagttgaacgtaatcacatgtgttggtgttagacacttgacacacctttgattagaggtgtcggtactacggaaggt |
6074618 |
T |
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| Q |
144 |
gtaacaaattaggtttttgttt |
165 |
Q |
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| T |
6074619 |
gtaacgaatcaggtttttgttt |
6074640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 4793879 - 4793926
Alignment:
| Q |
58 |
aaaataaattatataaacataatcacatgtgttggtatcggacacctg |
105 |
Q |
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| T |
4793879 |
aaaattaattaattaaacataatcacatgtgttagtatcggacacctg |
4793926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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