View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4211_low_10 (Length: 280)

Name: NF4211_low_10
Description: NF4211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4211_low_10
NF4211_low_10
[»] chr5 (7 HSPs)
chr5 (18-240)||(39542485-39542705)
chr5 (18-146)||(3193447-3193575)
chr5 (18-79)||(12263638-12263699)
chr5 (18-103)||(502878-502959)
chr5 (18-89)||(16569284-16569353)
chr5 (43-146)||(18600482-18600585)
chr5 (18-118)||(32257638-32257738)
[»] chr4 (14 HSPs)
chr4 (18-146)||(2113915-2114043)
chr4 (21-121)||(375799-375899)
chr4 (18-73)||(29118548-29118603)
chr4 (27-121)||(1750077-1750171)
chr4 (19-87)||(40807830-40807898)
chr4 (18-102)||(48653744-48653828)
chr4 (39-117)||(37226331-37226409)
chr4 (58-107)||(29369853-29369902)
chr4 (18-113)||(5627567-5627662)
chr4 (18-137)||(15986804-15986923)
chr4 (40-85)||(4596445-4596490)
chr4 (18-107)||(20811471-20811560)
chr4 (21-117)||(12320483-12320579)
chr4 (19-99)||(25779614-25779694)
[»] scaffold0777 (1 HSPs)
scaffold0777 (18-146)||(5921-6049)
[»] chr7 (14 HSPs)
chr7 (19-121)||(33480441-33480542)
chr7 (18-89)||(36066188-36066258)
chr7 (18-79)||(40351759-40351820)
chr7 (27-123)||(1693987-1694085)
chr7 (22-144)||(48393208-48393329)
chr7 (18-117)||(26914298-26914396)
chr7 (18-104)||(3351156-3351242)
chr7 (21-118)||(22318617-22318714)
chr7 (18-79)||(42335937-42335998)
chr7 (44-117)||(49164731-49164804)
chr7 (19-58)||(3940664-3940703)
chr7 (18-72)||(21129326-21129380)
chr7 (20-82)||(35812693-35812755)
chr7 (27-79)||(26448457-26448509)
[»] chr6 (11 HSPs)
chr6 (18-105)||(31153603-31153690)
chr6 (18-117)||(34329777-34329876)
chr6 (27-123)||(4337577-4337672)
chr6 (55-146)||(31236886-31236976)
chr6 (18-105)||(34540826-34540913)
chr6 (55-146)||(31246262-31246352)
chr6 (18-107)||(33344897-33344986)
chr6 (18-117)||(34573142-34573239)
chr6 (27-83)||(34969852-34969908)
chr6 (27-70)||(9524836-9524879)
chr6 (21-118)||(5608091-5608187)
[»] chr1 (10 HSPs)
chr1 (18-104)||(38742470-38742556)
chr1 (18-102)||(3265435-3265519)
chr1 (19-146)||(1153650-1153777)
chr1 (18-79)||(10976110-10976171)
chr1 (27-117)||(1240516-1240606)
chr1 (36-105)||(22667161-22667230)
chr1 (19-83)||(29062354-29062418)
chr1 (22-86)||(34298937-34299000)
chr1 (38-102)||(36382974-36383038)
chr1 (41-139)||(30718180-30718278)
[»] scaffold0527 (2 HSPs)
scaffold0527 (18-102)||(1721-1805)
scaffold0527 (18-102)||(9784-9868)
[»] chr2 (10 HSPs)
chr2 (27-121)||(32596729-32596823)
chr2 (28-106)||(40705886-40705964)
chr2 (18-104)||(36186577-36186663)
chr2 (18-138)||(30257713-30257833)
chr2 (27-83)||(2887013-2887069)
chr2 (19-102)||(38565174-38565256)
chr2 (18-83)||(16547740-16547805)
chr2 (18-79)||(33819132-33819193)
chr2 (18-83)||(35280919-35280983)
chr2 (18-103)||(38608314-38608399)
[»] scaffold1173 (1 HSPs)
scaffold1173 (18-113)||(404-499)
[»] chr8 (9 HSPs)
chr8 (28-98)||(36042839-36042909)
chr8 (18-102)||(41849457-41849540)
chr8 (18-104)||(7255478-7255564)
chr8 (18-104)||(9052952-9053038)
chr8 (18-104)||(24606848-24606933)
chr8 (20-114)||(43872585-43872679)
chr8 (19-79)||(9191271-9191331)
chr8 (18-117)||(13236258-13236357)
chr8 (18-78)||(13580351-13580411)
[»] chr3 (6 HSPs)
chr3 (18-104)||(8266561-8266647)
chr3 (40-79)||(19149848-19149887)
chr3 (18-104)||(11365123-11365209)
chr3 (19-117)||(33682616-33682714)
chr3 (18-60)||(54417033-54417075)
chr3 (28-85)||(168672-168729)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 39542485 - 39542705
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39542485 gaaaatatgtttttaaagaactttgattatgaataaa-cttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacaattttatt 39542583  T
Q  118 aatttgcatagggcactaaaaatattagggaccgaccctgtaagtagtgaagtaataagagagatctcgaatttgattcacacatacaaattaacaatta 217  Q
    |||| ||||||||||| |||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39542584 aattcgcatagggcaccaaaaatattaag-accgaccccgtaaggagtgaagtaataagagagatctcgaatttgattcacacctacaaattaacaatta 39542682  T
Q  218 atatattaatatttgtctatttt 240  Q
    |||||||||||||| ||||||||    
T  39542683 atatattaatatttatctatttt 39542705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 3193575 - 3193447
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||  ||||||||    
T  3193575 gaaaatatgtttttaaagaactttgattatgaatgaatcttttgcaataaaaaatgcaagaagaaagacattcaaataattaaaaggacataattttatt 3193476  T
Q  118 aatttgcatagggcactaaaaatattagg 146  Q
    |||| ||  ||||| |||||||| |||||    
T  3193475 aattcgcccagggcgctaaaaatcttagg 3193447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 12263699 - 12263638
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaa 79  Q
    |||||||| |||||||||||||||||||||  || |||||||| |||||||| |||||||||    
T  12263699 gaaaatatatttttaaagaactttgattatagatgaatcttttgcaataaaagatgcaagaa 12263638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 502878 - 502959
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaag 103  Q
    |||||||| |||||| |||||||||||||||||| |||||||| ||| ||||||   || ||| |||||||||| |||||||||||    
T  502878 gaaaatatatttttagagaactttgattatgaatgaatcttttgcaaaaaaaaa---aaaaag-aagacattcaaataattaaaag 502959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 16569353 - 16569284
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacatt 89  Q
    ||||||||||||||| | ||| |||| ||| ||||||||| || |||  |||||||||||||||||||||||    
T  16569353 gaaaatatgtttttagaaaaccttgaatataaataaatctattgcaa--aaaaatgcaagaagaaagacatt 16569284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 18600482 - 18600585
Alignment:
Q  43 attatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttattaatttgcatagggcactaaaaatat 142  Q
    ||||||||| | |||||| ||||||||||| ||||||||||||  |||| |||||||||  |  | |||||||| |||| |   |||||||||||||| |    
T  18600482 attatgaatgattcttttgcaataaaaaatacaagaagaaagatgttcaaataattaaagagataagattttatgaattcgtccagggcactaaaaatct 18600581  T
Q  143 tagg 146  Q
    ||||    
T  18600582 tagg 18600585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 32257738 - 32257638
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    ||||||||  ||||| |||||||||||||| ||| ||| || |  || |||||||||||||| ||| | |||   ||||||||||||||||  |||||||    
T  32257738 gaaaatatacttttagagaactttgattataaatgaattttgtgtaacaaaaaatgcaagaacaaaaaaattggaataattaaaagggcacagttttatt 32257639  T
Q  118 a 118  Q
    |    
T  32257638 a 32257638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 2113915 - 2114043
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    ||||||||||||||||||||| |||||||||||| |||||||| ||||||||||| |||||||||||||||||| |||||||||||| ||   |||||||    
T  2113915 gaaaatatgtttttaaagaaccttgattatgaattaatcttttgcaataaaaaatacaagaagaaagacattcaaataattaaaaggacatagttttatt 2114014  T
Q  118 aatttgcatagggcactaaaaatattagg 146  Q
     ||| || ||||||||||||||| |||||    
T  2114015 gattcgcttagggcactaaaaatcttagg 2114043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 375899 - 375799
Alignment:
Q  21 aatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttattaat 120  Q
    |||||||||||||| ||||||||| ||||   ||||||| || |||||||||| ||||||||| ||||| | |||||||||| || || |||||||||||    
T  375899 aatatgtttttaaaaaactttgataatgacggaatctttaaccataaaaaatgtaagaagaaatacatttaaataattaaaaaggtacaattttattaat 375800  T
Q  121 t 121  Q
    |    
T  375799 t 375799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 29118548 - 29118603
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatg 73  Q
    |||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||    
T  29118548 gaaaatatgtttttaaagaactttgattatgaatgaatattttgcaataaaaaatg 29118603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 1750077 - 1750171
Alignment:
Q  27 tttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttattaatt 121  Q
    |||||||||||| |||||||  ||||||||||||||||  ||||||| ||||||||||| |||   |||||||||| | ||| | ||||||||||    
T  1750077 tttttaaagaaccttgattacaaataaatcttttacaacgaaaaatgaaagaagaaagatattttaataattaaaacgtcacaactttattaatt 1750171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 40807898 - 40807830
Alignment:
Q  19 aaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagaca 87  Q
    |||||||||||||| | ||| |||||||||||| |||||| | ||| ||||||||||| ||||||||||    
T  40807898 aaaatatgtttttagataacattgattatgaatgaatcttatccaacaaaaaatgcaaaaagaaagaca 40807830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 48653744 - 48653828
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaa 102  Q
    |||||||| || ||| ||||  || ||||||||| |||||||| ||| |||| ||||||||||||||||||||  ||||||||||    
T  48653744 gaaaatattttcttagagaatcttaattatgaatgaatcttttgcaacaaaacatgcaagaagaaagacattcgaataattaaaa 48653828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 37226331 - 37226409
Alignment:
Q  39 tttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    |||||||||  || |||||||| ||| |||||||| || || ||||||||||| |||||||||||  ||||||||||||    
T  37226331 tttgattattgatgaatcttttgcaacaaaaaatgaaataaaaaagacattcaaataattaaaagaacacgattttatt 37226409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 29369902 - 29369853
Alignment:
Q  58 tttacaataaaaaatgcaagaagaaagacattcatataattaaaagggca 107  Q
    ||||||| ||||||| |||||||||||||||||| |||||||||| ||||    
T  29369902 tttacaacaaaaaatacaagaagaaagacattcaaataattaaaaaggca 29369853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 5627567 - 5627662
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattt 113  Q
    ||||| ||||||||| | |||| ||||||| ||| ||| |||| ||| ||||||||||| |||||| | |||   ||||||||||||||| |||||    
T  5627567 gaaaaaatgtttttatataactctgattataaatgaatattttgcaacaaaaaatgcaataagaaaaatatttgaataattaaaagggcatgattt 5627662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 15986923 - 15986804
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    ||||||||  ||||||||||| || || |||||| ||||||||||  || || || |||||||||| ||||| | |||||||||| ||| | |||| ||     
T  15986923 gaaaatataattttaaagaaccttaatcatgaatgaatcttttacggtataagatacaagaagaaaaacatttaaataattaaaaaggcgcaatttcatc 15986824  T
Q  118 aatttgcatagggcactaaa 137  Q
    |||| |  ||||||||||||    
T  15986823 aattcgtctagggcactaaa 15986804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 4596490 - 4596445
Alignment:
Q  40 ttgattatgaataaatcttttacaataaaaaatgcaagaagaaaga 85  Q
    |||||||||||| |||||||| ||| ||||||||||| ||||||||    
T  4596490 ttgattatgaatgaatcttttgcaacaaaaaatgcaaaaagaaaga 4596445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 20811560 - 20811471
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggca 107  Q
    |||||||| ||||||||||| ||||||||||| | ||  |||| |||  ||||||| |||||| || ||||||  |||||||||| ||||    
T  20811560 gaaaatatatttttaaagaattttgattatgagtgaagtttttgcaacgaaaaatgaaagaagcaaaacattcgaataattaaaatggca 20811471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 12320483 - 12320579
Alignment:
Q  21 aatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    ||||| |||||||| ||||| |||||| ||| ||| |||| ||| |||||||| |||||||||   |||   ||||||||||| |||| ||||||||    
T  12320483 aatatttttttaaaaaacttcgattataaatgaatattttgcaacaaaaaatgtaagaagaaaactattggaataattaaaagagcacaattttatt 12320579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 25779694 - 25779614
Alignment:
Q  19 aaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataatta 99  Q
    ||||||| ||| || | |||||||||||||||| |||||| | ||| ||| ||||||| ||| |||| ||||| |||||||    
T  25779694 aaaatatatttgtagaaaactttgattatgaatgaatcttctgcaacaaagaatgcaaaaaggaagatattcaaataatta 25779614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 5921 - 6049
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    |||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||| || ||||||||||||||| |||||||||||| ||  |||| |||    
T  5921 gaaaatatgtttttaaagaattttgattatgaatgaattttttgcaataaaaaatacatgaagaaagacattcaaataattaaaaggacataatttcatt 6020  T
Q  118 aatttgcatagggcactaaaaatattagg 146  Q
    |||| |   |||||| ||||||| |||||    
T  6021 aattcgtccagggcattaaaaatcttagg 6049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 33480542 - 33480441
Alignment:
Q  19 aaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatta 118  Q
    |||||||||||||||||||| || ||||||||| |||||| | ||||||||||| |||||||||||||||||| |||||||||||| ||  |||||||||    
T  33480542 aaaatatgtttttaaagaacctt-attatgaattaatcttctgcaataaaaaatacaagaagaaagacattcaaataattaaaaggacataattttatta 33480444  T
Q  119 att 121  Q
    |||    
T  33480443 att 33480441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 36066188 - 36066258
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacatt 89  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||  |||||| ||||||||||||||||    
T  36066188 gaaaatatatttttagagaattttgattatgaataaatcttttacaa-caaaaatacaagaagaaagacatt 36066258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 40351820 - 40351759
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaa 79  Q
    |||||||| ||||||||||||||||||||| |||||||||||  ||| ||||||||||||||    
T  40351820 gaaaatatatttttaaagaactttgattataaataaatctttatcaacaaaaaatgcaagaa 40351759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 1694085 - 1693987
Alignment:
Q  27 tttttaaagaactttgattatgaataaatcttttac-aataaaaaatgcaag-aagaaagacattcatataattaaaagggcacgattttattaatttg 123  Q
    |||||||||||| |||||||||||| | | |||||| || |||||||||||| || ||| ||||||| |||||||||||||||  | ||||||||||||    
T  1694085 tttttaaagaaccttgattatgaatgagttttttacaaaaaaaaaatgcaagaaaaaaatacattcaaataattaaaagggcataactttattaatttg 1693987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 48393329 - 48393208
Alignment:
Q  22 atatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttattaatt 121  Q
    |||| |||||| | || ||||||||| ||||||||||| |||| |||||||  ||||||||||||||| | |||||||||| | ||| | ||||||||||    
T  48393329 atatatttttagataattttgattataaataaatctttcacaacaaaaaatataagaagaaagacatttaaataattaaaa-gacacaactttattaatt 48393231  T
Q  122 tgcatagggcactaaaaatatta 144  Q
      | |||| ||| ||||||||||    
T  48393230 ctcttaggacacaaaaaatatta 48393208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 26914396 - 26914298
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    |||||||| |||||||| ||| || ||||| ||| ||| |||| ||| |||||||||||||||||| | ||| | |||||||||||| ||| ||||||||    
T  26914396 gaaaatatatttttaaataacgttaattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatattaaaataattaaaaggacac-attttatt 26914298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 3351156 - 3351242
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagg 104  Q
    |||| ||| |||||| | |||||||||||| ||| ||| |||||||| |||||||||||||||||| | |||   ||||||||||||    
T  3351156 gaaattatatttttagataactttgattataaatgaatattttacaacaaaaaatgcaagaagaaaaatattttaataattaaaagg 3351242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 22318714 - 22318617
Alignment:
Q  21 aatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatta 118  Q
    ||||| |||||| | |||||| ||||| |||||||||||| ||| |||||||| ||||| |||   ||| | |||| ||||||||||| |||||||||    
T  22318714 aatatatttttagaaaactttaattataaataaatcttttgcaacaaaaaatgtaagaaaaaaactattgaaataactaaaagggcacaattttatta 22318617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 42335998 - 42335937
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaa 79  Q
    |||||||| |||||||| |||||||||||| ||| |||||||| ||| |||||||| |||||    
T  42335998 gaaaatatatttttaaaaaactttgattataaatgaatcttttgcaacaaaaaatgtaagaa 42335937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 49164804 - 49164731
Alignment:
Q  44 ttatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    |||||||| |||||||| ||  | |||||||||||||||||||||| | |||||||||| | ||| ||||||||    
T  49164804 ttatgaatgaatcttttgcagaataaaatgcaagaagaaagacatttacataattaaaatgacacaattttatt 49164731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 3940703 - 3940664
Alignment:
Q  19 aaaatatgtttttaaagaactttgattatgaataaatctt 58  Q
    ||||||| ||||||||||||||||||||| ||||||||||    
T  3940703 aaaatatctttttaaagaactttgattataaataaatctt 3940664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 21129380 - 21129326
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaat 72  Q
    |||||||| |||||| |||| ||||||||| ||| |||||||| |||||||||||    
T  21129380 gaaaatatttttttagagaattttgattataaattaatcttttgcaataaaaaat 21129326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 35812693 - 35812755
Alignment:
Q  20 aaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaa 82  Q
    |||||| |||||| | |||||||||||| ||| ||| |||| ||| |||||||||||||||||    
T  35812693 aaatatatttttagataactttgattataaatgaatattttgcaacaaaaaatgcaagaagaa 35812755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 26448457 - 26448509
Alignment:
Q  27 tttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaa 79  Q
    |||||| ||||||||||| || ||| |||||||| ||| ||||||||||||||    
T  26448457 tttttagagaactttgataataaatgaatcttttgcaacaaaaaatgcaagaa 26448509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 31153690 - 31153603
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaaggg 105  Q
    ||||||||||||||||| ||||||||| |||||| |||||||| |||||||||||||||||  ||| ||| ||| |||||||||||||    
T  31153690 gaaaatatgtttttaaataactttgatcatgaatgaatcttttgcaataaaaaatgcaagagaaaaaacactcaaataattaaaaggg 31153603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 34329876 - 34329777
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    |||||||| |||||| ||||||||| |||| |||| ||||||| ||| |||||||||||||||||| | |||   ||||||||||||||| |||||||||    
T  34329876 gaaaatatatttttagagaactttgcttataaatagatcttttgcaacaaaaaatgcaagaagaaaaatattagaataattaaaagggcatgattttatt 34329777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 4337672 - 4337577
Alignment:
Q  27 tttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttattaatttg 123  Q
    |||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||  |||   |||||||||| ||||| ||||||||| ||||    
T  4337672 tttttaaa-aactttgattataaataaatcttttacaacaaaaaatgtaagaagaaagctattagaataattaaaatggcacaattttattattttg 4337577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 31236976 - 31236886
Alignment:
Q  55 tcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttattaatttgcatagggcactaaaaatattagg 146  Q
    |||||| |||||||||||||||||||||||||| ||| |||||||||| | ||| |||||||||||| |   |||||||| ||||| |||||    
T  31236976 tcttttgcaataaaaaatgcaagaagaaagaca-tcaaataattaaaatgacacaattttattaattcgtccagggcacttaaaatcttagg 31236886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 34540913 - 34540826
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaaggg 105  Q
    |||||||| |||||||| ||  |||||||||||||||| |||| ||| ||||||| || ||||||| ||||||| || ||||||||||    
T  34540913 gaaaatatatttttaaataatcttgattatgaataaattttttgcaacaaaaaatacatgaagaaatacattcaaatgattaaaaggg 34540826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 146
Target Start/End: Complemental strand, 31246352 - 31246262
Alignment:
Q  55 tcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttattaatttgcatagggcactaaaaatattagg 146  Q
    |||||| |||||||||||||||||| ||||||| ||| |||||||||| | ||| |||||||||||| |   |||||||| ||||| |||||    
T  31246352 tcttttgcaataaaaaatgcaagaataaagaca-tcaaataattaaaatgacacaattttattaattcgttcagggcacttaaaatcttagg 31246262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 33344897 - 33344986
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggca 107  Q
    |||||||| |||||| | |||||||||||| ||| ||| |||| ||| ||||||||| |||||||| | |||   |||||||||||||||    
T  33344897 gaaaatatatttttagataactttgattataaatgaatattttgcaacaaaaaatgctagaagaaaaatatttgaataattaaaagggca 33344986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 34573239 - 34573142
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||  || ||| ||||||| |||||| | |||   ||| || ||||||||| ||||||||    
T  34573239 gaaaatatatttttaaagaactttgattataaatgaatctttt--aaaaaagaatgcaaaaagaaaaatatttgaatattttaaagggcacaattttatt 34573142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 34969852 - 34969908
Alignment:
Q  27 tttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaa 83  Q
    |||||||  |||||||| ||| ||| |||||||||||| ||||||||||||||||||    
T  34969852 tttttaagaaactttgactataaatgaatcttttacaacaaaaaatgcaagaagaaa 34969908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 9524879 - 9524836
Alignment:
Q  27 tttttaaagaactttgattatgaataaatcttttacaataaaaa 70  Q
    ||||||| |||||| |||||| ||||||||||||||||||||||    
T  9524879 tttttaatgaacttcgattataaataaatcttttacaataaaaa 9524836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 5608091 - 5608187
Alignment:
Q  21 aatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatta 118  Q
    ||||| ||| || |||| ||||||||||||| | ||||||  || |||||||  || |||||||||||||| |||||| ||||||||| | |||||||    
T  5608091 aatatatttctagagaattttgattatgaatga-tcttttgtaacaaaaaatataaaaagaaagacattcaaataatttaaagggcacaactttatta 5608187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 38742470 - 38742556
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagg 104  Q
    |||||||| |||||| |||||||||||||||||| |||||||||||| |||||||||| | | ||||||||||| || |||||||||    
T  38742470 gaaaatatatttttagagaactttgattatgaattaatcttttacaaaaaaaaatgcagggaaaaagacattcaaatcattaaaagg 38742556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 3265519 - 3265435
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaa 102  Q
    ||||||||||||| | |||||||| ||||| ||| |||||||| ||| |||||||||| ||||||||||||||  ||||||||||    
T  3265519 gaaaatatgttttaagagaacttttattatcaatgaatcttttgcaacaaaaaatgcacgaagaaagacattcgaataattaaaa 3265435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 1153777 - 1153650
Alignment:
Q  19 aaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatta 118  Q
    |||||||||||| | |||||||||||| | ||| |||||||| ||| |||||| ||||||||||||| ||||  |||||||||| || || | ||||||     
T  1153777 aaaatatgttttaagagaactttgattttcaattaatcttttgcaacaaaaaacgcaagaagaaagatattcggataattaaaacggtacaactttattg 1153678  T
Q  119 atttgcatagggcactaaaaatattagg 146  Q
    ||| ||| ||| ||| |||||| |||||    
T  1153677 attcgcacaggacaccaaaaatcttagg 1153650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 10976171 - 10976110
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaa 79  Q
    |||||||| |||||| | |||||||||||| ||||||||||||||||||||||||| |||||    
T  10976171 gaaaatatatttttataaaactttgattataaataaatcttttacaataaaaaatgtaagaa 10976110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 1240516 - 1240606
Alignment:
Q  27 tttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    |||||| ||||||| |||||| ||| |||||||| ||| |||||||||||||||||| | ||    |||||||||||||||| ||||||||    
T  1240516 tttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaaaatatcaggataattaaaagggcacaattttatt 1240606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 22667230 - 22667161
Alignment:
Q  36 aactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaaggg 105  Q
    |||||||||||| ||| ||| |||| |||||||||||||||||||||| | |||   |||||||||||||    
T  22667230 aactttgattataaatgaatattttgcaataaaaaatgcaagaagaaaaatatttgaataattaaaaggg 22667161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 29062418 - 29062354
Alignment:
Q  19 aaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaa 83  Q
    ||||||| || ||| |||||||| ||||| |||||||||||| ||| ||||||| ||||||||||    
T  29062418 aaaatatattgttagagaacttttattataaataaatcttttgcaacaaaaaatacaagaagaaa 29062354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 34299000 - 34298937
Alignment:
Q  22 atatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagac 86  Q
    |||| |||||||||||||| ||||||||||||||||||| ||  |||||| | ||||||||||||    
T  34299000 atatatttttaaagaactt-gattatgaataaatcttttccagcaaaaaacgtaagaagaaagac 34298937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 36382974 - 36383038
Alignment:
Q  38 ctttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaa 102  Q
    |||||||||||||| ||| ||| |||| |||||||| | ||||||| ||||||| ||||||||||    
T  36382974 ctttgattatgaatgaatatttcacaacaaaaaatgtatgaagaaaaacattcaaataattaaaa 36383038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 139
Target Start/End: Original strand, 30718180 - 30718278
Alignment:
Q  41 tgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttattaatttgcatagggcactaaaaa 139  Q
    ||||||||||| ||| ||||  |  |||||||  ||||||||||||||||| ||||||||||  | || | |||||||||||||| | | |||||||||    
T  30718180 tgattatgaatgaattttttcaacaaaaaaatataagaagaaagacattcaaataattaaaattgtacaactttattaatttgcacatgccactaaaaa 30718278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 1721 - 1805
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaa 102  Q
    |||||||| |||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||| | ||| | ||||||||||    
T  1721 gaaaatatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaa 1805  T

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Target: scaffold0527; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 9784 - 9868
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaa 102  Q
    |||||||| |||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||| | ||| | ||||||||||    
T  9784 gaaaatatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaataattaaaa 9868  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 27 - 121
Target Start/End: Complemental strand, 32596823 - 32596729
Alignment:
Q  27 tttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttattaatt 121  Q
    |||||||| ||| || ||||| ||| |||||||||||||||||||| ||| |||||||||||| | |||||||||||  | ||||||||||||||    
T  32596823 tttttaaataacatttattattaatgaatcttttacaataaaaaatacaaaaagaaagacattaaaataattaaaagaacgcgattttattaatt 32596729  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 40705964 - 40705886
Alignment:
Q  28 ttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggc 106  Q
    |||| |||||| |||||||  ||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||||||    
T  40705964 ttttgaagaaccttgattacaaataaattttttgtaataaaaaatgcaagaagaaagacattcaaataattaaaagggc 40705886  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 36186663 - 36186577
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagg 104  Q
    |||||||| |||||| |||||||||||||| |||||||||||| ||| |||||||| | ||||||| |||||   ||||||||||||    
T  36186663 gaaaatatatttttagagaactttgattataaataaatcttttgcaacaaaaaatgtatgaagaaaaacattagaataattaaaagg 36186577  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 30257833 - 30257713
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    |||||||| |||||| |||||||||||||| ||||||||||||  || |||||||||||||  ||| | ||| | ||| |||||||||||| || |||||    
T  30257833 gaaaatatatttttagagaactttgattataaataaatcttttgaaacaaaaaatgcaagataaaaaatattaaaatatttaaaagggcacaatcttatt 30257734  T
Q  118 aatttgcatagggcactaaaa 138  Q
      || || |||||||| ||||    
T  30257733 gtttcgcctagggcacaaaaa 30257713  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 2887069 - 2887013
Alignment:
Q  27 tttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaa 83  Q
    |||||| |||||||||||||| |||||||| | ||||| ||||||||||||||||||    
T  2887069 tttttagagaactttgattataaataaatcatctacaacaaaaaatgcaagaagaaa 2887013  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 38565256 - 38565174
Alignment:
Q  19 aaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaa 102  Q
    ||||||| |||||||||||| || ||||||||  ||||||||   | ||||||| ||| |||||||||||||| ||||||||||    
T  38565256 aaaatatatttttaaagaaccttaattatgaactaatcttttgtta-aaaaaatccaaaaagaaagacattcaaataattaaaa 38565174  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 16547740 - 16547805
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaa 83  Q
    ||||||||  ||||| | |||||||||||| |||  ||||||||||| |||||||| |||||||||    
T  16547740 gaaaatattattttagaaaactttgattataaatggatcttttacaacaaaaaatgtaagaagaaa 16547805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 33819193 - 33819132
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaa 79  Q
    |||||||| ||||||||| ||| |  |||| |||  ||||||||||||||||||||||||||    
T  33819193 gaaaatatatttttaaagtactgtagttataaatggatcttttacaataaaaaatgcaagaa 33819132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 35280983 - 35280919
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaa 83  Q
    |||||||| |||||||| || | | ||||||||| |||||||| || |||||||||||||||||||    
T  35280983 gaaaatatatttttaaataattatcattatgaatgaatctttttca-taaaaaatgcaagaagaaa 35280919  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 38608399 - 38608314
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaag 103  Q
    |||||||| |||||||||||| || ||||||||| |||| ||| ||| ||||||| || ||| ||| |||||   |||||||||||    
T  38608399 gaaaatatatttttaaagaaccttaattatgaatcaatcatttgcaacaaaaaatacaggaataaacacatttgaataattaaaag 38608314  T

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Target: scaffold1173 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 404 - 499
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattt 113  Q
    ||||| || |||||| | |||||||||||| ||| ||| ||||||||||||||||||||||||||| | |||   ||||||||| |||||| ||||    
T  404 gaaaaaatatttttagataactttgattataaattaatattttacaataaaaaatgcaagaagaaaaatatttgaataattaaaggggcacaattt 499  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 36042909 - 36042839
Alignment:
Q  28 ttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataatt 98  Q
    ||||||||||| |||||||||||| ||| |||| ||| ||||||| |||||||||||| ||||| ||||||    
T  36042909 ttttaaagaaccttgattatgaattaattttttgcaacaaaaaatacaagaagaaagaaattcaaataatt 36042839  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 41849457 - 41849540
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaa 102  Q
    |||||||| |||||||||||  |||||||| ||| |||||||| ||| ||||||  ||| |||||||||||||| ||||||||||    
T  41849457 gaaaatatatttttaaagaatcttgattattaatgaatctttttcaacaaaaaa-acaaaaagaaagacattcaaataattaaaa 41849540  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 7255478 - 7255564
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataa-aaaatgcaagaagaaagacattcatataattaaaagg 104  Q
    ||||||||||||||| ||||| | |||||| ||| ||| |||||||| || ||||  |||||||||||||||| ||||||||||||||    
T  7255478 gaaaatatgtttttagagaacat-gattataaatgaatattttacaaaaagaaaaaacaagaagaaagacatttatataattaaaagg 7255564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 9052952 - 9053038
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagg 104  Q
    |||||||| | |||| ||||| |||||||||||| | |||||||||| ||||||||  | |||||| ||||| | ||||||||||||    
T  9052952 gaaaatatatatttagagaaccttgattatgaatgattcttttacaacaaaaaatgtgaaaagaaatacatttaaataattaaaagg 9053038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 24606848 - 24606933
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagg 104  Q
    |||||||| |||||||||||||||  |||| ||| |||||||| ||  |||||||| ||||||||||||||| | |||| |||||||    
T  24606848 gaaaatat-tttttaaagaactttatttataaatgaatcttttgcagcaaaaaatgtaagaagaaagacatttaaataactaaaagg 24606933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 114
Target Start/End: Original strand, 43872585 - 43872679
Alignment:
Q  20 aaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgatttt 114  Q
    |||||| ||||||||||||||||||||| ||| |||||| | ||| ||||||| ||| |||||| | |||   ||||||||||||| || |||||    
T  43872585 aaatatatttttaaagaactttgattataaatgaatcttgtgcaacaaaaaatacaaaaagaaaaatattagaataattaaaagggtacaatttt 43872679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 9191271 - 9191331
Alignment:
Q  19 aaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaa 79  Q
    ||||||| |||||| |||||| ||||||| ||| |||||||||||| ||| ||||||||||    
T  9191271 aaaatatatttttagagaactatgattataaatgaatcttttacaacaaataatgcaagaa 9191331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 13236258 - 13236357
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    |||||||| |||||| |||||||||||||| ||  ||| |||| ||| ||| |||||||||||||| | |||   |||||||||| ||||  ||||||||    
T  13236258 gaaaatatatttttagagaactttgattataaacgaattttttgcaacaaataatgcaagaagaaaaatattggaataattaaaatggcataattttatt 13236357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 13580411 - 13580351
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaaga 78  Q
    |||||||| |||||||| ||||||| |||| ||| ||| |||| ||| |||||||||||||    
T  13580411 gaaaatatatttttaaataactttggttataaatgaatattttgcaacaaaaaatgcaaga 13580351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 8266647 - 8266561
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagg 104  Q
    ||||||||||||| | ||||| |||||||| ||| || ||||||||| ||||||| ||| |||| ||||||| | ||||||||||||    
T  8266647 gaaaatatgttttcagagaaccttgattattaatgaaccttttacaacaaaaaatacaaaaagagagacatttaaataattaaaagg 8266561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 19149887 - 19149848
Alignment:
Q  40 ttgattatgaataaatcttttacaataaaaaatgcaagaa 79  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  19149887 ttgattataaataaatcttttacaataaaaaatgcaagaa 19149848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 11365123 - 11365209
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagg 104  Q
    ||||| || |||||||| |||||||||||| ||| ||| |||| ||| |||||||||||||||||| | |||   ||||||||||||    
T  11365123 gaaaagatatttttaaataactttgattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatatttgaataattaaaagg 11365209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 33682714 - 33682616
Alignment:
Q  19 aaaatatgtttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaagacattcatataattaaaagggcacgattttatt 117  Q
    ||||||| |||||||||||| |||| ||| ||  ||||||||  || || |||||| |||||||||||||||  | |||||||||||||| | ||||||    
T  33682714 aaaatatttttttaaagaaccttgactataaaggaatcttttgtaacaacaaatgctagaagaaagacattcgaaaaattaaaagggcacaactttatt 33682616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 54417075 - 54417033
Alignment:
Q  18 gaaaatatgtttttaaagaactttgattatgaataaatctttt 60  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||    
T  54417075 gaaaatatgtttttaaagaattttgattataaatgaatctttt 54417033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 168729 - 168672
Alignment:
Q  28 ttttaaagaactttgattatgaataaatcttttacaataaaaaatgcaagaagaaaga 85  Q
    ||||| ||||| |||||||||||| ||||||||  || ||||||||||| ||||||||    
T  168729 ttttagagaaccttgattatgaatgaatcttttgtaacaaaaaatgcaacaagaaaga 168672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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