View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4211_low_11 (Length: 269)
Name: NF4211_low_11
Description: NF4211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4211_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 41367569 - 41367681
Alignment:
| Q |
7 |
aataatgtttgttgttggtaataatcgatgtaa----aaagctttattgaatgttgttggaatgaaaattaaggaaaggaatcgcacatgatcaggaaca |
102 |
Q |
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| T |
41367569 |
aataatgtttgttgttggtaataatcgatgtaattaaaaagctttattgaatgttgttggaatgaaaattaaggaaaggaatcgcacatgatcagcaaca |
41367668 |
T |
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| Q |
103 |
actttaatttgag |
115 |
Q |
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| T |
41367669 |
actttaatttgag |
41367681 |
T |
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Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 41367675 - 41367744
Alignment:
| Q |
149 |
atttaagcaaaattttgtggaaatgacagaaaacactgctgtggattaagcagagaagagaatcaatgag |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
41367675 |
atttgagcaaaattttgtggaaatgacagaaaacactgctatggattaagcagagaagagaatcaatgag |
41367744 |
T |
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