View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4211_low_13 (Length: 255)
Name: NF4211_low_13
Description: NF4211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4211_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 96 - 244
Target Start/End: Original strand, 131309 - 131457
Alignment:
| Q |
96 |
cagagactggcacgatggggactaatttattcaatgcccgatacaacaacatccaattccaatgcatgcaaggtttgttattttttggggtaggatatcc |
195 |
Q |
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| T |
131309 |
cagagactggcacgatggggactaatttattcaatgcccgatacaacaacatccaattccaatgcatgcaaggtttgttattttttggggtaggatatcc |
131408 |
T |
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| Q |
196 |
attttatttctaattacttgcctttacctctaattctcttcctcttctt |
244 |
Q |
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| T |
131409 |
attttatttctaattacctgccattacctctaattctcttcctcttctt |
131457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 131215 - 131275
Alignment:
| Q |
19 |
gttacgtactaacataacacactttctttatcatagtcataatcacaacattcattcacta |
79 |
Q |
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| T |
131215 |
gttacgtactaacataacacactttctttatcatagtcataatcacaacattcattcacta |
131275 |
T |
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