View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4211_low_15 (Length: 238)
Name: NF4211_low_15
Description: NF4211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4211_low_15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 2245617 - 2245836
Alignment:
| Q |
17 |
aataatatatactctctttgacctatgatgaatcaaaatctactgcaatgcaattattatggaaaatgacacatttttataagctaagcaacatcaacaa |
116 |
Q |
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||||| ||||||||||| || |||||||||| ||||||||||||| || ||| | ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2245617 |
aataacatatactctct--gatctatgatgaaccaaaatctactgccatacaaatgttatggaaaatagcacatttttataagctaagcaacatcaacaa |
2245714 |
T |
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| Q |
117 |
aattaccattaaaagcaattccaaattcttcattaggagcaagttgagctgcagctggattatagaacagtttaagcttttcaccctgccaaaatttata |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2245715 |
aattaccattaaaagcaattccaaattcttcattaggagcaagttgagctgcagctggattatagaacagtttaagcttttcaccctgccaaaatttata |
2245814 |
T |
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| Q |
217 |
aaagaaattacaaaaactaatt |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
2245815 |
aaagaaattacaaaaactaatt |
2245836 |
T |
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