View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4211_low_2 (Length: 585)

Name: NF4211_low_2
Description: NF4211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4211_low_2
NF4211_low_2
[»] chr5 (12 HSPs)
chr5 (32-569)||(4634374-4634911)
chr5 (36-107)||(11978964-11979035)
chr5 (44-109)||(17697388-17697453)
chr5 (44-126)||(17947136-17947218)
chr5 (44-109)||(41768184-41768249)
chr5 (44-109)||(43463677-43463742)
chr5 (75-126)||(20427495-20427546)
chr5 (53-127)||(27529693-27529767)
chr5 (44-125)||(6023639-6023720)
chr5 (68-109)||(21823892-21823933)
chr5 (44-119)||(21273105-21273181)
chr5 (36-105)||(478947-479016)
[»] chr8 (20 HSPs)
chr8 (36-142)||(1010748-1010854)
chr8 (36-109)||(15014285-15014358)
chr8 (37-126)||(29977998-29978087)
chr8 (45-110)||(39920663-39920728)
chr8 (36-109)||(8445597-8445670)
chr8 (44-105)||(25720044-25720105)
chr8 (45-109)||(8305968-8306032)
chr8 (75-172)||(25320634-25320731)
chr8 (75-130)||(13447662-13447717)
chr8 (44-151)||(31462190-31462297)
chr8 (75-109)||(24425564-24425598)
chr8 (44-130)||(25108945-25109031)
chr8 (44-126)||(42451906-42451988)
chr8 (44-109)||(21312453-21312518)
chr8 (75-127)||(1682168-1682220)
chr8 (54-142)||(3774829-3774917)
chr8 (78-130)||(5252608-5252660)
chr8 (44-100)||(9741510-9741566)
chr8 (56-103)||(23448173-23448220)
chr8 (39-92)||(23942874-23942927)
[»] chr4 (27 HSPs)
chr4 (36-196)||(18871014-18871174)
chr4 (36-126)||(22196285-22196375)
chr4 (36-142)||(51071967-51072073)
chr4 (36-107)||(17188635-17188706)
chr4 (37-124)||(17402514-17402601)
chr4 (36-98)||(39867006-39867068)
chr4 (36-119)||(37871997-37872080)
chr4 (44-126)||(5320244-5320326)
chr4 (36-109)||(36653033-36653106)
chr4 (54-142)||(10040061-10040149)
chr4 (75-127)||(17535999-17536051)
chr4 (42-130)||(22741263-22741351)
chr4 (36-124)||(53481511-53481599)
chr4 (36-103)||(32320763-32320830)
chr4 (37-130)||(6355192-6355285)
chr4 (44-109)||(12727096-12727161)
chr4 (54-163)||(46610679-46610788)
chr4 (36-108)||(9897847-9897919)
chr4 (57-109)||(28066875-28066927)
chr4 (79-130)||(16698705-16698756)
chr4 (44-126)||(23805169-23805251)
chr4 (55-100)||(10358395-10358440)
chr4 (48-109)||(19498958-19499019)
chr4 (36-109)||(39061007-39061080)
chr4 (44-109)||(48639407-48639472)
chr4 (36-92)||(29553101-29553157)
chr4 (36-100)||(53100262-53100326)
[»] chr7 (16 HSPs)
chr7 (36-126)||(7288130-7288220)
chr7 (36-110)||(6457744-6457818)
chr7 (36-103)||(9601531-9601598)
chr7 (36-103)||(9829102-9829169)
chr7 (44-126)||(27292881-27292963)
chr7 (44-126)||(44232496-44232578)
chr7 (44-126)||(641565-641647)
chr7 (53-127)||(3942851-3942925)
chr7 (44-106)||(48778895-48778957)
chr7 (36-109)||(17195273-17195346)
chr7 (36-105)||(38430411-38430480)
chr7 (38-110)||(12463671-12463743)
chr7 (38-124)||(20367887-20367973)
chr7 (68-109)||(8751135-8751176)
chr7 (38-103)||(13063094-13063159)
chr7 (44-132)||(19322881-19322969)
[»] chr1 (13 HSPs)
chr1 (36-126)||(36983970-36984060)
chr1 (36-132)||(50817219-50817315)
chr1 (36-126)||(15174552-15174642)
chr1 (42-130)||(43914142-43914230)
chr1 (44-126)||(33569652-33569734)
chr1 (36-109)||(34548044-34548117)
chr1 (36-109)||(48241173-48241246)
chr1 (36-124)||(42910071-42910159)
chr1 (44-118)||(32303968-32304042)
chr1 (78-121)||(31912940-31912983)
chr1 (44-106)||(14206184-14206246)
chr1 (44-119)||(16631046-16631122)
chr1 (44-160)||(22159033-22159149)
[»] chr2 (23 HSPs)
chr2 (36-163)||(45702531-45702658)
chr2 (36-110)||(33036310-33036384)
chr2 (36-163)||(45469506-45469633)
chr2 (44-130)||(13139141-13139227)
chr2 (44-106)||(355173-355235)
chr2 (46-124)||(26403641-26403719)
chr2 (68-109)||(17007502-17007543)
chr2 (68-109)||(17065051-17065092)
chr2 (36-109)||(37326526-37326599)
chr2 (44-109)||(40903455-40903520)
chr2 (44-119)||(5663998-5664073)
chr2 (46-126)||(1841966-1842046)
chr2 (34-126)||(3251401-3251493)
chr2 (73-109)||(16936843-16936879)
chr2 (46-127)||(22870367-22870448)
chr2 (54-110)||(39529773-39529829)
chr2 (44-124)||(42051547-42051627)
chr2 (75-130)||(13353145-13353200)
chr2 (75-142)||(45717975-45718042)
chr2 (45-94)||(23479782-23479831)
chr2 (75-140)||(26245804-26245869)
chr2 (36-109)||(27270331-27270404)
chr2 (42-94)||(27501151-27501203)
[»] chr3 (17 HSPs)
chr3 (36-110)||(14091490-14091564)
chr3 (44-126)||(12214158-12214240)
chr3 (44-109)||(53504511-53504576)
chr3 (38-133)||(20356672-20356766)
chr3 (37-127)||(30827844-30827934)
chr3 (75-148)||(1231467-1231540)
chr3 (44-163)||(15243986-15244105)
chr3 (75-126)||(25049774-25049825)
chr3 (75-126)||(29807458-29807509)
chr3 (36-126)||(19566184-19566274)
chr3 (44-105)||(32517874-32517935)
chr3 (44-124)||(298768-298848)
chr3 (42-132)||(462647-462737)
chr3 (44-106)||(39051039-39051101)
chr3 (44-109)||(15028763-15028828)
chr3 (44-109)||(42830021-42830086)
chr3 (44-132)||(15204995-15205083)
[»] scaffold0309 (1 HSPs)
scaffold0309 (38-126)||(551-639)
[»] chr6 (15 HSPs)
chr6 (38-126)||(12334891-12334979)
chr6 (36-117)||(15171432-15171513)
chr6 (36-117)||(15180204-15180285)
chr6 (36-127)||(15161427-15161518)
chr6 (36-117)||(15471900-15471981)
chr6 (36-102)||(12608225-12608291)
chr6 (44-109)||(2855468-2855533)
chr6 (36-109)||(12913599-12913672)
chr6 (68-109)||(16478977-16479018)
chr6 (44-109)||(17738949-17739014)
chr6 (68-109)||(18488383-18488424)
chr6 (78-126)||(3298057-3298105)
chr6 (75-105)||(6345468-6345498)
chr6 (34-92)||(32186465-32186523)
chr6 (76-125)||(10748055-10748104)
[»] scaffold0155 (1 HSPs)
scaffold0155 (36-109)||(32949-33022)
[»] scaffold0533 (1 HSPs)
scaffold0533 (36-117)||(725-806)
[»] scaffold0693 (1 HSPs)
scaffold0693 (36-124)||(285-373)
[»] scaffold0015 (1 HSPs)
scaffold0015 (36-127)||(5973-6064)
[»] scaffold0300 (1 HSPs)
scaffold0300 (36-109)||(8204-8277)
[»] scaffold0153 (1 HSPs)
scaffold0153 (68-109)||(23609-23650)
[»] scaffold0031 (1 HSPs)
scaffold0031 (79-119)||(67282-67322)


Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 32 - 569
Target Start/End: Complemental strand, 4634911 - 4634374
Alignment:
Q  32 tctcttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagt 131  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||    
T  4634911 tctcttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaatcggaatagatgacatgacaaatttcaaaagt 4634812  T
Q  132 atgaggcgacctccgaaggacaggaatttattgtttcaagacgtcaatcgagtactaatacggtatatattttaagttaagcatgtatgtactaagcaca 231  Q
    ||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4634811 atgagacgacctccaaaggacaggaatttattatttcaagatgtcaatcgagtactaatacagtatatattttaagttaagcatgtatgtactaagcaca 4634712  T
Q  232 taccaacgaatacaagtcatggcttgtgatcaaaagagcattttagtaatccaatctggccagcttaagcatggagagttgcttaagcatgtctagatgg 331  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4634711 tatcaacgaatacaagtcatggcttgtgatcaaaagagcattttagtaatccaatctggccagcttaagcttggagagttgcttaagcatgtctagatgg 4634612  T
Q  332 tagttagttcgttaattaaaatggaagttaatttaattgtactatgtactaatcacaagctcccgttcccacctcacgtaccaatcgttcagctcactac 431  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4634611 tagttagttcgttaattaaaaaggaagttaatttaattgtaccatgtactaatcacaagctcccgttcccacctcacgtaccaatcgttcagctcactac 4634512  T
Q  432 aaagcttgtaatggcaagtggcaaccataaaagaggtaacgcgcaaggaatctagccagttttaatgggaaatagactatagagtataaaaaagacattg 531  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4634511 aaagcttgtaatggcaagtggcaaccataaaagaggtaacgcgcaaggaatctaaccagttttaatgggaaatagactatagagtataaaaaagacattg 4634412  T
Q  532 catcattgtatactgggccatgttcgaatttcatatat 569  Q
    |||||||||||| |||||||||||||||||||||||||    
T  4634411 catcattgtataatgggccatgttcgaatttcatatat 4634374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 11979035 - 11978964
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaaga 107  Q
    |||||||||||||| || |||||||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  11979035 ttaaataaagattcgatagaagaaattatacatgtgggtgccatgaagaaggaaagaaagtaaaccggaaga 11978964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 17697388 - 17697453
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||| ||||||||||||  || |||||||||||| ||||||||||||||||||||||||||    
T  17697388 agattcaatagaagaaattatacctgcaggtgccttgaaaaaggaaagaaagtaaaccggaagaga 17697453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 17947136 - 17947218
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||||| ||||||||||||  || ||||||| |||| ||||||||||||||||||||||||||  | |||||| ||||||    
T  17947136 agattcaatagaagaaattatacctgcaggtgccatgaaaaaggaaagaaagtaaaccggaagagaggatatgacatatttca 17947218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 41768249 - 41768184
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||| || |||||||||| |||||| || ||||| ||||||| ||||||||||||||||||    
T  41768249 agattcaatagaggaaattatatctgtaggggctttgaaaaaggaaataaagtaaaccggaagaga 41768184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 43463742 - 43463677
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||| |||||||||||| ||||||| || ||||| ||| ||||||||||||||||| ||||    
T  43463742 agattcaatagaagaaattatacatgtaggggctttgaaaaagaaaagaaagtaaaccggaggaga 43463677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 20427546 - 20427495
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||||||||||||||||||||| |||||||||  |||||||| ||||||    
T  20427546 gccttgaagaaggaaagaaagtaaatcggaagagaggacatgacatatttca 20427495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 27529693 - 27529767
Alignment:
Q  53 ggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaa 127  Q
    ||||||||||||| |||| || |||||||| | |||||||||||||| |||||||||  ||| |||| |||||||    
T  27529693 ggaagaaattatacatgtgggagccttgaaaacggaaagaaagtaaatcggaagagaagacaagacatatttcaa 27529767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 6023639 - 6023720
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttc 125  Q
    ||||||||| ||||||| ||||  |  ||| |||||||| |||||||||| ||||||||||||| | |||||||| ||||||    
T  6023639 agattcaatagaagaaaatatacctacaggggccttgaaaaaggaaagaatgtaaaccggaagaaagaacatgaccaatttc 6023720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 21823933 - 21823892
Alignment:
Q  68 tgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    |||||| ||||||||||||||||||||||||||||| |||||    
T  21823933 tgtaggggccttgaagaaggaaagaaagtaaaccgggagaga 21823892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 21273105 - 21273181
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaagg-aaagaaagtaaaccggaagagataacatgaca 119  Q
    ||||||||  |||||||| ||| ||||||| |||||||| |||| |||||||||||||||| |||||  ||||||||    
T  21273105 agattcaacagaagaaataatacatgtaggagccttgaaaaagggaaagaaagtaaaccgggagagaggacatgaca 21273181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 478947 - 479016
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaa 105  Q
    |||||||||||||||| || ||||||||||  ||  || || ||||||||||||||||| || |||||||    
T  478947 ttaaataaagattcaagggtagaaattatacctgagggggctttgaagaaggaaagaaaatagaccggaa 479016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 2e-29; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 1010748 - 1010854
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatga 135  Q
    |||||||||||||| || ||||||||||||| ||  || |||||||||||||||||||||||||||||||||||| |||||||| |||||||||| || |    
T  1010748 ttaaataaagattcgatagaagaaattatatttgcgggggccttgaagaaggaaagaaagtaaaccggaagagatgacatgacagatttcaaaaggatca 1010847  T
Q  136 ggcgacc 142  Q
    |||||||    
T  1010848 ggcgacc 1010854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 15014285 - 15014358
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||||||| |||||||||||||||| |||| |  |||||||||||||||||||||||||||| ||||||    
T  15014285 ttaaataaagattgaatggaagaaattatacatgtggcagccttgaagaaggaaagaaagtaaaccgcaagaga 15014358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 29977998 - 29978087
Alignment:
Q  37 taaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    |||||||||||||||| |||||||||||| |||| |||| |||||||||| |||||||||||| |  ||||||| | |||||| ||||||    
T  29977998 taaataaagattcaatagaagaaattatacatgtgggtgtcttgaagaagaaaagaaagtaaatcataagagatgatatgacatatttca 29978087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 39920663 - 39920728
Alignment:
Q  45 gattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagat 110  Q
    |||||||| || ||||| |||  |||||||||||||||||||||||||||||||||||||||||||    
T  39920663 gattcaatagaggaaatgatacctgtaggtgccttgaagaaggaaagaaagtaaaccggaagagat 39920728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 8445597 - 8445670
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||| |||||||||||||||||| |||  || ||| || |||||||||||||||||||| |||||||||||    
T  8445597 ttaaatatagattcaatggaagaaatgatacctgaaggagctttgaagaaggaaagaaagtagaccggaagaga 8445670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 25720105 - 25720044
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaa 105  Q
    ||||||||| ||||||||||||| |||||| || ||||| ||||||||||||||||||||||    
T  25720105 agattcaatagaagaaattatatttgtaggggctttgaaaaaggaaagaaagtaaaccggaa 25720044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 8305968 - 8306032
Alignment:
Q  45 gattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||| || ||||||||||||  || |||||||||||||||||||||||| ||||||||||||||    
T  8305968 gattcgatagaagaaattatacctgcaggtgccttgaagaaggaaagaaaataaaccggaagaga 8306032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 25320634 - 25320731
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatgaggcgacctccgaaggacaggaatttattgtttcaaga 172  Q
    |||||||| ||||||||||||||||||||||| ||| ||| |||||||||||  ||||  || || |||||||| |||| ||| ||||| || |||||    
T  25320634 gccttgaaaaaggaaagaaagtaaaccggaagcgatgacaggacaaatttcagcagtaccagacgccctccgaaagacaagaacttattattccaaga 25320731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 13447662 - 13447717
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaag 130  Q
    ||||||||||||||||||||||| ||| ||||||| |||| |||||| ||||||||    
T  13447662 gccttgaagaaggaaagaaagtagaccagaagagagaacaagacaaacttcaaaag 13447717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 31462190 - 31462297
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatgaggcgacct 143  Q
    ||||||||| |||||||||||| ||| ||  || ||||| ||| |||||||||| |||||||||||  |||||||| |||| | ||| |  || ||||||    
T  31462190 agattcaatagaagaaattatacatgcagaagctttgaaaaagtaaagaaagtagaccggaagagaggacatgacagattttagaagaaccagacgacct 31462289  T
Q  144 ccgaagga 151  Q
    ||||||||    
T  31462290 ccgaagga 31462297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 24425564 - 24425598
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    |||||||||||||||||||||||||||||||||||    
T  24425564 gccttgaagaaggaaagaaagtaaaccggaagaga 24425598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 130
Target Start/End: Complemental strand, 25109031 - 25108945
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaag 130  Q
    |||||| || ||||||||||||  || ||| || ||||| ||||||||||||||||||||||||||  ||||||   ||||||||||    
T  25109031 agattcgatagaagaaattatacctgcaggggctttgaaaaaggaaagaaagtaaaccggaagagaggacatgaatgatttcaaaag 25108945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 42451988 - 42451906
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||||| ||||||||||||  || ||| || ||||| |||||||||||||||||||| |||||  ||| |||| ||||||    
T  42451988 agattcaatagaagaaattatacctgcaggagctttgaaaaaggaaagaaagtaaaccggtagagaggacaagacagatttca 42451906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 21312518 - 21312453
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||| ||||||||||||  || ||| |||||||| ||||||||||| ||||||| ||||||    
T  21312518 agattcaatagaagaaattatacctgcaggcgccttgaaaaaggaaagaaaataaaccgaaagaga 21312453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 1682220 - 1682168
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaa 127  Q
    ||||||||||||||||||||||||| ||| |||||  |||||||| |||||||    
T  1682220 gccttgaagaaggaaagaaagtaaatcggcagagaggacatgacagatttcaa 1682168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 142
Target Start/End: Original strand, 3774829 - 3774917
Alignment:
Q  54 gaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatgaggcgacc 142  Q
    ||||||||||||  ||  || |||||||| ||||||||||||||||| ||||| ||  ||| |||||||||||| ||||| || |||||    
T  3774829 gaagaaattatacctgcgggagccttgaaaaaggaaagaaagtaaactggaagcgaggacaggacaaatttcaatagtatcagacgacc 3774917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 5252660 - 5252608
Alignment:
Q  78 ttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaag 130  Q
    |||||||||||||||||||||| || ||||||  |||||||||| ||||||||    
T  5252660 ttgaagaaggaaagaaagtaaatcgaaagagaatacatgacaaacttcaaaag 5252608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 9741510 - 9741566
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaac 100  Q
    |||||| |||||||| |||||| |||| || |||||||||||||||||||| |||||    
T  9741510 agattctatggaagagattatacatgtgggggccttgaagaaggaaagaaaataaac 9741566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 23448173 - 23448220
Alignment:
Q  56 agaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccgg 103  Q
    |||||||||| ||| ||| |||||||| ||||||||||||||||||||    
T  23448173 agaaattatacatgcaggagccttgaaaaaggaaagaaagtaaaccgg 23448220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 23942874 - 23942927
Alignment:
Q  39 aataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaaga 92  Q
    |||||||||||||||||||| |||||| |||  || || |||||||||||||||    
T  23942874 aataaagattcaatggaagagattatacatgatggagctttgaagaaggaaaga 23942927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 18871014 - 18871174
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatga 135  Q
    ||||||||||||||||| || |||||||||  ||| || ||||||||||||||||||||||||| ||||||||| || | |||||||||||| || || |    
T  18871014 ttaaataaagattcaatagaggaaattatacttgtgggagccttgaagaaggaaagaaagtaaatcggaagagacaataggacaaatttcaagagaatca 18871113  T
Q  136 ggcgacctccgaaggacaggaatttattgtttcaagacgtcaatcgagtactaatacggta 196  Q
    |||| ||||| || || ||||||||| |||| |||  || ||||| |||| |||| |||||    
T  18871114 ggcggcctcccaatgaaaggaatttactgttccaattcgacaatctagtagtaatgcggta 18871174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 22196375 - 22196285
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||| |||||||||  |||||||||||  ||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  22196375 ttaaatatagattcaataaaagaaattatacctgtgggtgccttgaagaaggaaagaaagtaaaccggaagagacgacatgacaaatttca 22196285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 51072073 - 51071967
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatga 135  Q
    |||||||||||||| |||||||||||||||  ||| || ||||||||||||||||||||||||||||| ||||||  || |||| |||| ||||| || |    
T  51072073 ttaaataaagattctatggaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggtagagatgtcaggacagatttgaaaaggatca 51071974  T
Q  136 ggcgacc 142  Q
    |||||||    
T  51071973 ggcgacc 51071967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 17188635 - 17188706
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaaga 107  Q
    |||||||||||||| || || |||||||||  |||||||||||||||||| |||||||||||||||||||||    
T  17188635 ttaaataaagattcgatagaggaaattatacctgtaggtgccttgaagaaagaaagaaagtaaaccggaaga 17188706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 17402601 - 17402514
Alignment:
Q  37 taaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaattt 124  Q
    ||||||||||||| |||||||||||||||| ||  || ||||||||||| |||||||| ||||||| || |||| |||||||| ||||    
T  17402601 taaataaagattctatggaagaaattatatctgggggggccttgaagaaagaaagaaaataaaccgaaacagatgacatgacagattt 17402514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 36 - 98
Target Start/End: Complemental strand, 39867068 - 39867006
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaa 98  Q
    |||||||||||||| || || |||||||||  |||||||||||||||||||||||||||||||    
T  39867068 ttaaataaagattcgatagaggaaattatacctgtaggtgccttgaagaaggaaagaaagtaa 39867006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 119
Target Start/End: Original strand, 37871997 - 37872080
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgaca 119  Q
    ||||||||||||||||| |||||||| |||  ||  || || |||||||||||||||||||| |||||||||||| ||| ||||    
T  37871997 ttaaataaagattcaatagaagaaatgatacctgcgggagctttgaagaaggaaagaaagtagaccggaagagatgacaagaca 37872080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 5320326 - 5320244
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||| ||| |||||||||||| |||  || ||||||||||||||||||||||||| |||||||||  | |||||| ||||||    
T  5320326 agatttaatagaagaaattatacatgcgggagccttgaagaaggaaagaaagtaaatcggaagagaggatatgacagatttca 5320244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 36653033 - 36653106
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||| |||||||||||||||||| ||| |||  || || |||||||||||||||||||| | |||||||||    
T  36653033 ttaaatatagattcaatggaagaaatgatacatgcgggagctttgaagaaggaaagaaagtagatcggaagaga 36653106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 142
Target Start/End: Complemental strand, 10040149 - 10040061
Alignment:
Q  54 gaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatgaggcgacc 142  Q
    ||||||||||||  || |||  |||||||||||||||||||||||||||| || ||  ||| |||| ||||||||||||  ||||||||    
T  10040149 gaagaaattatacttgcagggaccttgaagaaggaaagaaagtaaaccgggagcgaggacaggacatatttcaaaagtaccaggcgacc 10040061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 17535999 - 17536051
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaa 127  Q
    |||||||| |||||||||||||||||||||||||||  ||||||| |||||||    
T  17535999 gccttgaaaaaggaaagaaagtaaaccggaagagatggcatgacatatttcaa 17536051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 22741263 - 22741351
Alignment:
Q  42 aaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaag 130  Q
    |||||||||| |||||| |||||| ||||| | ||||||||  | |||||||||||||||||||||||  | | |||| ||||||||||    
T  22741263 aaagattcaagggaagagattatacatgtatgagccttgaaataagaaagaaagtaaaccggaagagaggataggacatatttcaaaag 22741351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 53481511 - 53481599
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaattt 124  Q
    ||||||| ||||||||| |||||||||| |  || ||| || ||||| |||||||||||||||||| |||||||  ||| |||||||||    
T  53481511 ttaaatatagattcaatagaagaaattagacctgcaggggctttgaaaaaggaaagaaagtaaaccagaagagaggacaagacaaattt 53481599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 32320830 - 32320763
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccgg 103  Q
    |||||||||||||||||  |||||||||||| |||| | |||||||||| ||||| ||| ||||||||    
T  32320830 ttaaataaagattcaataaaagaaattatatttgtatgagccttgaagatggaaataaattaaaccgg 32320763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 37 - 130
Target Start/End: Complemental strand, 6355285 - 6355192
Alignment:
Q  37 taaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaag 130  Q
    |||||||||||||||| ||||| || ||| ||| ||| |||||||||||  ||||||| || |||||||||||  ||| |||| | ||||||||    
T  6355285 taaataaagattcaatagaagagatgatacatgcaggagccttgaagaacaaaagaaaatagaccggaagagaagacaagacagacttcaaaag 6355192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 12727096 - 12727161
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||| ||||||||| ||  || ||| || ||||| ||||||||||||||||||||||||||    
T  12727096 agattcaatagaagaaattgtacctgcaggggctttgaaaaaggaaagaaagtaaaccggaagaga 12727161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 163
Target Start/End: Original strand, 46610679 - 46610788
Alignment:
Q  54 gaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatgaggcgacctccgaaggaca 153  Q
    ||||||||||||  |||||| || ||||| ||||||||||||||||||||||  ||  |||||||| |||||| ||| |  || ||||| ||||  || |    
T  46610679 gaagaaattatacctgtaggggctttgaaaaaggaaagaaagtaaaccggaatggaagacatgacagatttcagaagaaccagacgaccgccgagagaaa 46610778  T
Q  154 ggaatttatt 163  Q
    ||||||||||    
T  46610779 ggaatttatt 46610788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 108
Target Start/End: Original strand, 9897847 - 9897919
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagag 108  Q
    ||||||| |||||||||||||||||| |||  || ||  || |||||||||||||||||||| | ||||||||    
T  9897847 ttaaatatagattcaatggaagaaatgatacctgcagaagctttgaagaaggaaagaaagtagatcggaagag 9897919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 28066927 - 28066875
Alignment:
Q  57 gaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    |||||||||  |||||| |||||||| || |||||||||||||||||||||||    
T  28066927 gaaattatacctgtaggagccttgaaaaaagaaagaaagtaaaccggaagaga 28066875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 16698756 - 16698705
Alignment:
Q  79 tgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaag 130  Q
    ||||||||||||||||||| ||| |||||||  |||||||| ||||||||||    
T  16698756 tgaagaaggaaagaaagtagaccagaagagaagacatgacagatttcaaaag 16698705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 23805251 - 23805169
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||||| |||||||| ||| |||| |  |||||||||||||||||||| || ||||||| |||  ||| |||||| ||||    
T  23805251 agattcaatagaagaaatgatacatgtggaagccttgaagaaggaaagaaaatagaccggaaaagaggacaagacaaacttca 23805169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 10358440 - 10358395
Alignment:
Q  55 aagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaac 100  Q
    |||||||||||  ||| || ||||||||||||||||||||||||||    
T  10358440 aagaaattatacctgtgggggccttgaagaaggaaagaaagtaaac 10358395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 19498958 - 19499019
Alignment:
Q  48 tcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||| |||||||||||| ||| ||| || ||||| ||||||| |||||||||||| |||||    
T  19498958 tcaatagaagaaattatacatgcaggggctttgaaaaaggaaataaagtaaaccggcagaga 19499019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 39061007 - 39061080
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||| |||||||| ||||||||| ||| |||  || || ||||||||||| |||||||| | |||||||||    
T  39061007 ttaaatatagattcaagggaagaaatgatacatgcgggagctttgaagaaggacagaaagtagatcggaagaga 39061080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 48639472 - 48639407
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||| || ||||| ||| |||  || || |||||||||||||||||||| |||||||||||    
T  48639472 agattcaatagaggaaatgatacatgcgggagctttgaagaaggaaagaaagtagaccggaagaga 48639407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 29553157 - 29553101
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaaga 92  Q
    ||||||||||||||||||||||| ||||||  ||  || || |||||||||||||||    
T  29553157 ttaaataaagattcaatggaagagattatacctgacggagctttgaagaaggaaaga 29553101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 53100326 - 53100262
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaac 100  Q
    ||||||||| |||  |||||||||||||||  ||  || ||||||||||| ||||||||||||||    
T  53100326 ttaaataaatatttgatggaagaaattatacctgcgggggccttgaagaatgaaagaaagtaaac 53100262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 1e-24; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 7288130 - 7288220
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||| ||||||||| ||||||||||||  ||| |||||||||||||||||||||||||||||| |||||||  |||||||||||||||    
T  7288130 ttaaatatagattcaatagaagaaattatacctgtgggtgccttgaagaaggaaagaaagtaaaccagaagagacgacatgacaaatttca 7288220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 6457818 - 6457744
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagat 110  Q
    |||||||||||||| || || ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||    
T  6457818 ttaaataaagattcgatagaggaaattatacatgtaggtgccttgaagaaagaaagaaagtaaaccggaagagat 6457744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 9601531 - 9601598
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccgg 103  Q
    |||||||||||||| |||||||||||||||  |||||| |||||||||||||||||||||||||||||    
T  9601531 ttaaataaagattcgatggaagaaattatacctgtaggggccttgaagaaggaaagaaagtaaaccgg 9601598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 9829102 - 9829169
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccgg 103  Q
    |||||||||||||| |||||||||||||||  |||||| |||||||||||||||||||||||||||||    
T  9829102 ttaaataaagattcgatggaagaaattatacctgtaggggccttgaagaaggaaagaaagtaaaccgg 9829169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 27292963 - 27292881
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||| ||| ||||||||||||  || |||||||||||| ||||||||||||||||||||||||||  |||||||| ||||||    
T  27292963 agatttaatagaagaaattatacctgcaggtgccttgaaaaaggaaagaaagtaaaccggaagagaggacatgacagatttca 27292881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 44232578 - 44232496
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||||| ||| |||||||| |||| | |||||||||||||||||||||||||||||||||| |  |||||||| ||||||    
T  44232578 agattcaatagaaaaaattatacatgtggatgccttgaagaaggaaagaaagtaaaccggaagatacgacatgacagatttca 44232496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 641647 - 641565
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||||| || |||| ||||  ||||||||||||||| |||||||||||||||||||| |||||  |||||||| ||||||    
T  641647 agattcaatagaggaaactatacctgtaggtgccttgaaaaaggaaagaaagtaaaccggtagagaagacatgacagatttca 641565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 53 - 127
Target Start/End: Original strand, 3942851 - 3942925
Alignment:
Q  53 ggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaa 127  Q
    |||||||| |||| |||| || |||||||| ||||||||||||||||||||||||||  ||| ||||||||||||    
T  3942851 ggaagaaaatatacatgtgggagccttgaaaaaggaaagaaagtaaaccggaagagaagacaggacaaatttcaa 3942925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 48778895 - 48778957
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaag 106  Q
    ||||||||| |||||||||||| |||  || ||||||||||||||||||||||||||||||||    
T  48778895 agattcaatagaagaaattatacatgcgggagccttgaagaaggaaagaaagtaaaccggaag 48778957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 17195273 - 17195346
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||||||||||| |||||||| |||  || ||| || |||||||||||||||||||| |||||||||||    
T  17195273 ttaaataaagattcaatagaagaaatgatacctgcaggagctttgaagaaggaaagaaagtagaccggaagaga 17195346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 38430480 - 38430411
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaa 105  Q
    ||||||| |||||| || ||||||||||||  ||| || |||||||||||||||||||||||||||||||    
T  38430480 ttaaatagagattcgatagaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggaa 38430411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 38 - 110
Target Start/End: Complemental strand, 12463743 - 12463671
Alignment:
Q  38 aaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagat 110  Q
    ||||||||| || |||||||||||||||  ||  || ||||||||||||||||||||||||| ||||||||||    
T  12463743 aaataaagaatcgatggaagaaattatacctgcgggggccttgaagaaggaaagaaagtaaatcggaagagat 12463671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 20367887 - 20367973
Alignment:
Q  38 aaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaattt 124  Q
    ||||||||||||||  ||||||||||||  ||   | |||||||||||||||||||||||||| ||||||||  |||| ||||||||    
T  20367887 aaataaagattcaaaagaagaaattatacctgcgagggccttgaagaaggaaagaaagtaaactggaagagacgacataacaaattt 20367973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 8751176 - 8751135
Alignment:
Q  68 tgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  8751176 tgtaggcgccttgaagaaggaaagaaagtaaaccggaagaga 8751135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 103
Target Start/End: Complemental strand, 13063159 - 13063094
Alignment:
Q  38 aaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccgg 103  Q
    ||||||||||||||| ||||||||||||  || ||| || ||||| ||||||||||||||||||||    
T  13063159 aaataaagattcaatagaagaaattatacctgcaggggctttgaaaaaggaaagaaagtaaaccgg 13063094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 19322969 - 19322881
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagta 132  Q
    ||||||||| || ||||| ||| |||  || || |||||||||||||||||||| |||||||||||  ||| |||| | ||||||||||    
T  19322969 agattcaatagaggaaatgatacatgcgggagctttgaagaaggaaagaaagtagaccggaagagaggacaagacagacttcaaaagta 19322881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 36983970 - 36984060
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||||| ||||||| |||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||  ||||||| ||||||    
T  36983970 ttaaataaatattcaatagaagaaattatacatgcaggtgccttgaagaagaaaagaaagtaaaccggaagagatgtcatgacagatttca 36984060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 50817315 - 50817219
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagta 132  Q
    |||||||||||||| |||||||||||||||  ||  || |||||||||||||||||||||||||||||||| ||  |||||||||||||||| ||||    
T  50817315 ttaaataaagattcgatggaagaaattatacctgcgggggccttgaagaaggaaagaaagtaaaccggaagcgaagacatgacaaatttcaagagta 50817219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 15174642 - 15174552
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    |||||||||||||| || ||||||||||||  ||| || ||||||||||||||||||||||||||||| ||| || |||||||||||||||    
T  15174642 ttaaataaagattcgatagaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggtagacatgacatgacaaatttca 15174552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 43914142 - 43914230
Alignment:
Q  42 aaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaag 130  Q
    ||||||||||||||||||||||||  ||| || ||||||||||||||||||||||||||||||| | || ||| || | ||||||||||    
T  43914142 aaagattcaatggaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggaacatatgacaggatatatttcaaaag 43914230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 33569652 - 33569734
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||||| ||||||||||||  || ||| || ||||| ||||||||||||||||||||||||||  ||| ||||| |||||    
T  33569652 agattcaatagaagaaattatacttgcaggggctttgaaaaaggaaagaaagtaaaccggaagagaggacaagacaactttca 33569734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 34548117 - 34548044
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||||||||||| |||||||| |||  ||  || || |||||||||||||||||||| |||||||||||    
T  34548117 ttaaataaagattcaatagaagaaatgatacctgcgggagctttgaagaaggaaagaaagtagaccggaagaga 34548044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 48241246 - 48241173
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||| ||||||||| |||||||| |||  || ||| || ||||| ||||||||||||||||||||||||||    
T  48241246 ttaaatatagattcaatagaagaaataatacctgcaggggctttgaaaaaggaaagaaagtaaaccggaagaga 48241173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 124
Target Start/End: Complemental strand, 42910159 - 42910071
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaattt 124  Q
    |||||||||||||| ||| || ||||||||   || |  |||||||||||||||||||| |||||||||| |||| |||||||| ||||    
T  42910159 ttaaataaagattctatgaaaaaaattatacccgtggaggccttgaagaaggaaagaaaataaaccggaacagatgacatgacagattt 42910071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 32303968 - 32304042
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgac 118  Q
    ||||||||| ||||||||||||  || | | || ||||| ||||||||||||||||||||||||||  |||||||    
T  32303968 agattcaatagaagaaattatacctgcatgggctttgaaaaaggaaagaaagtaaaccggaagagaggacatgac 32304042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 121
Target Start/End: Original strand, 31912940 - 31912983
Alignment:
Q  78 ttgaagaaggaaagaaagtaaaccggaagagataacatgacaaa 121  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||    
T  31912940 ttgaagaaggaaagaaagtagaccggaagagatgacaagacaaa 31912983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 14206246 - 14206184
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaag 106  Q
    ||||| ||| |||||||| ||| ||| ||| || ||||| |||||||||||||||||||||||    
T  14206246 agattgaatagaagaaataatacatgcaggggctttgaaaaaggaaagaaagtaaaccggaag 14206184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 119
Target Start/End: Complemental strand, 16631122 - 16631046
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaag-gaaagaaagtaaaccggaagagataacatgaca 119  Q
    ||||||||| || |||||||||| |||| | |||||||| ||  ||| |||||||||||||||||||  ||||||||    
T  16631122 agattcaatagaggaaattatatctgtaagggccttgaaaaaaagaacgaaagtaaaccggaagagaggacatgaca 16631046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 22159033 - 22159149
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatgaggcgacct 143  Q
    ||||||||| ||| |||||||| ||| | | || ||||| ||||||| ||||||||| ||||| ||  ||| |||| | ||||||||||| || || ||     
T  22159033 agattcaatagaaaaaattatacatgcatgggctttgaaaaaggaaataaagtaaactggaagtgaggacaggacagacttcaaaagtatcagacggcca 22159132  T
Q  144 ccgaaggacaggaattt 160  Q
    | |||||| ||||||||    
T  22159133 ctgaaggaaaggaattt 22159149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 6e-23; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 45702531 - 45702658
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatga 135  Q
    |||||||||||||| || || |||||||||  |||||| |||||||||||||||||||||||||||||||||||  |||||||| | |||| ||| |  |    
T  45702531 ttaaataaagattcgatagaggaaattatacctgtaggagccttgaagaaggaaagaaagtaaaccggaagagaggacatgacagacttcagaagaacta 45702630  T
Q  136 ggcgacctccgaaggacaggaatttatt 163  Q
    ||||||| || || |||| |||||||||    
T  45702631 ggcgaccaccaaacgacaagaatttatt 45702658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 33036310 - 33036384
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagat 110  Q
    |||||||||||||| |||||||||||||||  ||| || ||||||||||||||||||||||||||||||||||||    
T  33036310 ttaaataaagattcgatggaagaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggaagagat 33036384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 36 - 163
Target Start/End: Original strand, 45469506 - 45469633
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatga 135  Q
    |||| ||||||||| || || |||||||||  |||||| |||||||||||||||||||||||||||||||||||  |||||| ||| |||| ||| |  |    
T  45469506 ttaactaaagattcgatagaggaaattatacctgtaggagccttgaagaaggaaagaaagtaaaccggaagagaggacatgaaaaacttcagaagaacca 45469605  T
Q  136 ggcgacctccgaaggacaggaatttatt 163  Q
    ||||||| || || |||| |||||||||    
T  45469606 ggcgaccaccaaacgacaagaatttatt 45469633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 130
Target Start/End: Original strand, 13139141 - 13139227
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaag 130  Q
    |||||| || ||||||||||||  || ||||| |||||||||||||||||||||||||||||||||  | |||||| ||||||||||    
T  13139141 agattcgatagaagaaattatacttgcaggtgtcttgaagaaggaaagaaagtaaaccggaagagaggatatgacatatttcaaaag 13139227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 355235 - 355173
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaag 106  Q
    ||||||||| |||||||||||| |||  || ||||||||||||||||||||||||||||||||    
T  355235 agattcaatagaagaaattatacatgcgggagccttgaagaaggaaagaaagtaaaccggaag 355173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 46 - 124
Target Start/End: Complemental strand, 26403719 - 26403641
Alignment:
Q  46 attcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaattt 124  Q
    ||||||| |||||||||||| ||||||| |||| ||| ||||||||||||||||| ||||||||  |||||||| ||||    
T  26403719 attcaatagaagaaattatacatgtaggagcctggaaaaaggaaagaaagtaaactggaagagaggacatgacagattt 26403641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 17007502 - 17007543
Alignment:
Q  68 tgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17007502 tgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 17007543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 17065051 - 17065092
Alignment:
Q  68 tgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17065051 tgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 17065092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 37326526 - 37326599
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||| ||||||||| |||||||||||| ||| | | || ||||| ||||||||||||||||||||||||||    
T  37326526 ttaaatatagattcaatagaagaaattatacatgcatgagctttgaaaaaggaaagaaagtaaaccggaagaga 37326599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 40903520 - 40903455
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||| ||||||||||||  || ||| |||||||| ||||||||||||||||||||||||||    
T  40903520 agattcaatagaagaaattatacctgcaggggccttgaaaaaggaaagaaagtaaaccggaagaga 40903455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 119
Target Start/End: Original strand, 5663998 - 5664073
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgaca 119  Q
    ||||||||| ||||||||||||  || ||| || ||||| ||||||||||||||||||||||||||  ||||||||    
T  5663998 agattcaatagaagaaattatacctgcaggggctttgaaaaaggaaagaaagtaaaccggaagagaggacatgaca 5664073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 126
Target Start/End: Complemental strand, 1842046 - 1841966
Alignment:
Q  46 attcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||| ||| ||||||||  || ||| || ||| | ||||||||||||||||||||||||||  |||||||||||||||    
T  1842046 attcaatagaataaattatacttgcaggggctttggaaaaggaaagaaagtaaaccggaagagaggacatgacaaatttca 1841966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 3251401 - 3251493
Alignment:
Q  34 tcttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||| | |||||| || ||||||||||||  ||| || ||| | ||||||||||||||||||||||||| |||| ||| |||| ||||||    
T  3251401 tcttaaagatagattcgatagaagaaattatacctgtgggagccctcaagaaggaaagaaagtaaaccggaatagatgacaggacagatttca 3251493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 16936843 - 16936879
Alignment:
Q  73 gtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    |||||||||||||||||||||||||||||||||||||    
T  16936843 gtgccttgaagaaggaaagaaagtaaaccggaagaga 16936879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 22870367 - 22870448
Alignment:
Q  46 attcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaa 127  Q
    ||||||| ||||||| ||||  |||||| ||||| || || |||| ||||||||||||||||||  ||| ||||||||||||    
T  22870367 attcaatagaagaaagtatacttgtaggggccttaaaaaatgaaataaagtaaaccggaagagaggacaggacaaatttcaa 22870448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 39529773 - 39529829
Alignment:
Q  54 gaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagat 110  Q
    |||||| | ||| |||| || ||||||||||||||||||||||| ||||||||||||    
T  39529773 gaagaagtgatacatgtgggagccttgaagaaggaaagaaagtagaccggaagagat 39529829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 42051627 - 42051547
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaattt 124  Q
    |||||| |||||||| ||||||  ||| ||||||||||||||||||| ||| |||||||| || ||| ||| |||| ||||    
T  42051627 agattcgatggaagagattatacctgtgggtgccttgaagaaggaaataaaataaaccggtagggatgacaggacatattt 42051547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 13353200 - 13353145
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaag 130  Q
    |||||||||||  |||| |||||||| |||||||| |||||| |||||||||||||    
T  13353200 gccttgaagaaaaaaaggaagtaaactggaagagaaaacatgtcaaatttcaaaag 13353145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 45717975 - 45718042
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatgaggcgacc 142  Q
    ||||||||||||||||||||||||||||| || ||  ||| |||| ||||||| | ||| ||||||||    
T  45717975 gccttgaagaaggaaagaaagtaaaccgggagcgaagacaggacagatttcaacaatatcaggcgacc 45718042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 94
Target Start/End: Complemental strand, 23479831 - 23479782
Alignment:
Q  45 gattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaa 94  Q
    |||||||| |||||||| ||| ||| ||| ||||||||||||||||||||    
T  23479831 gattcaatagaagaaatgatacatgcaggagccttgaagaaggaaagaaa 23479782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 140
Target Start/End: Complemental strand, 26245869 - 26245804
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatgaggcga 140  Q
    ||||||||||||||||||||||||||||| || ||  ||| |||| ||||||| | ||| ||||||    
T  26245869 gccttgaagaaggaaagaaagtaaaccgggagcgaagacaggacagatttcaacaatatcaggcga 26245804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 27270404 - 27270331
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||| |||||||||||||||||  |||  | |||| || ||||||||||||| |||||| | |||||||||    
T  27270404 ttaaatatagattcaatggaagaaacgatacctataggagctttgaagaaggaaataaagtagatcggaagaga 27270331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 27501151 - 27501203
Alignment:
Q  42 aaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaa 94  Q
    ||||||||||| || ||||| ||| ||| ||| ||||||||||||||||||||    
T  27501151 aaagattcaatagaggaaataatacatgcaggagccttgaagaaggaaagaaa 27501203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 14091564 - 14091490
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagat 110  Q
    ||||||||||||||||||||||||||||||  |||| | ||||||||||||||||||||||||||||| ||||||    
T  14091564 ttaaataaagattcaatggaagaaattatacctgtaagggccttgaagaaggaaagaaagtaaaccggtagagat 14091490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 12214240 - 12214158
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||||| ||||||||||||  || |||||||||||| |||||||||||||||||||||||| |  ||| |||||||||||    
T  12214240 agattcaatagaagaaattatacctgcaggtgccttgaaaaaggaaagaaagtaaaccggaagaaaggacaggacaaatttca 12214158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 53504576 - 53504511
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||| ||||||||||||  |||||| || ||||| ||||||||||||||||||||||||||    
T  53504576 agattcaatagaagaaattatacctgtaggagctttgaaaaaggaaagaaagtaaaccggaagaga 53504511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 133
Target Start/End: Complemental strand, 20356766 - 20356672
Alignment:
Q  38 aaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtat 133  Q
    ||||||||||||||| ||||||||||||  | | | |||||| ||||| |||||||||| |||| ||||||||  |||||||||||||| ||||||    
T  20356766 aaataaagattcaatagaagaaattataccttttgatgccttaaagaaagaaagaaagt-aaccagaagagatggcatgacaaatttcagaagtat 20356672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 30827934 - 30827844
Alignment:
Q  37 taaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaa 127  Q
    ||||||||||||| || ||||||||||||  ||  || ||| ||||||||||||||||||||| || ||| ||  ||||||||||||||||    
T  30827934 taaataaagattcgatagaagaaattatacctgcgggggccctgaagaaggaaagaaagtaaatcgaaagcgaagacatgacaaatttcaa 30827844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 1231540 - 1231467
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatgaggcgacctccgaa 148  Q
    |||||||| | ||||||||||||||||||||| ||| |||||||| ||||||| ||||| || || ||||||||    
T  1231540 gccttgaaaagggaaagaaagtaaaccggaagcgatgacatgacagatttcaacagtatcagacgccctccgaa 1231467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 15244105 - 15243986
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagtatgaggcgacct 143  Q
    ||||||||| ||||||||||||  |  ||| || ||||| ||||||||||||||||  ||||||||  |||||||| | |||| |||||  || || ||     
T  15244105 agattcaatagaagaaattatacctacaggggcattgaaaaaggaaagaaagtaaattggaagagaggacatgacagacttcagaagtaccagacggcca 15244006  T
Q  144 ccgaaggacaggaatttatt 163  Q
    |||||||| |||||||||||    
T  15244005 ccgaaggaaaggaatttatt 15243986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 25049825 - 25049774
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||||||||||||||||||||||||| |||||  |||||||||| ||||    
T  25049825 gccttgaagaaggaaagaaagtaaaccgggagagaagacatgacaaacttca 25049774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 29807509 - 29807458
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    |||||||||||||||||||||||||||  |||||| ||||||||||| ||||    
T  29807509 gccttgaagaaggaaagaaagtaaaccaaaagagaaaacatgacaaacttca 29807458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 19566184 - 19566274
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||||| | |||| || ||||||||||||| ||  || |||||||||||||||| |||||||| ||| |||||  |||||||| ||||||    
T  19566184 ttaaatataaattcgatagaagaaattatatctgcgggagccttgaagaaggaaataaagtaaatcgggagagaggacatgacatatttca 19566274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 32517874 - 32517935
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaa 105  Q
    ||||||||| ||||||||||||  || ||| || ||||| ||||||||||||||||||||||    
T  32517874 agattcaatagaagaaattatacttgcaggggctttgaaaaaggaaagaaagtaaaccggaa 32517935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 298848 - 298768
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaattt 124  Q
    |||||||| |||||| ||||||  ||| || |||||||| ||||||||||| |||||||| || ||  |||||||||||||    
T  298848 agattcaagggaagagattatacctgtgggagccttgaaaaaggaaagaaattaaaccgggagcgacgacatgacaaattt 298768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 462737 - 462647
Alignment:
Q  42 aaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagta 132  Q
    |||||||  |||||||||||||||  ||  |  |||||||||||||||||||||||||||| ||| ||  ||| |||| ||||||| ||||    
T  462737 aaagatttgatggaagaaattatacctgcggcggccttgaagaaggaaagaaagtaaaccgaaagcgaagacaagacagatttcaagagta 462647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 39051101 - 39051039
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaag 106  Q
    ||||||||| ||||||||||||  ||| || || ||||| |||||||||||||||||| ||||    
T  39051101 agattcaatagaagaaattatacttgtgggagctttgaaaaaggaaagaaagtaaaccagaag 39051039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 15028828 - 15028763
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||| || ||||| ||| |||  || || |||||||||||||||||||| |||||||||||    
T  15028828 agattcaatagaggaaatgatacatgcgggagctttgaagaaggaaagaaagtagaccggaagaga 15028763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 42830086 - 42830021
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    |||||| || ||||||||||||  || ||| ||  |||| ||||||||||||||||||||||||||    
T  42830086 agattcgatagaagaaattatacctgcaggggctctgaaaaaggaaagaaagtaaaccggaagaga 42830021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 44 - 132
Target Start/End: Complemental strand, 15205083 - 15204995
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaaaagta 132  Q
    ||||||||| |||||||| |||  || ||| || ||||| |||||||||||||||| | |||||||  |||||||| | |||| |||||    
T  15205083 agattcaatagaagaaatcatacctgcaggggctttgaaaaaggaaagaaagtaaatcagaagagaggacatgacagacttcagaagta 15204995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 639 - 551
Alignment:
Q  38 aaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    |||||||||||| ||||| |||||||||  ||| || ||||||||||||||||||||||||||||| |||||| ||| |||| ||||||    
T  639 aaataaagattcgatggatgaaattatacctgtgggggccttgaagaaggaaagaaagtaaaccggtagagatgacaggacagatttca 551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 38 - 126
Target Start/End: Complemental strand, 12334979 - 12334891
Alignment:
Q  38 aaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||| ||||||| | ||||||||||||  | | ||||||||||||||||||||||||||||||||||||||  ||| |||||||||||    
T  12334979 aaatatagattcagtagaagaaattatacctatgggtgccttgaagaaggaaagaaagtaaaccggaagagacgacaagacaaatttca 12334891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 15171432 - 15171513
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatga 117  Q
    |||||||| ||||| || |||||||||||| |||| || |||||||||||  ||||||||||||||||||||||| ||||||    
T  15171432 ttaaataatgattcgatagaagaaattatacatgtgggggccttgaagaacaaaagaaagtaaaccggaagagatgacatga 15171513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 15180204 - 15180285
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatga 117  Q
    |||||||| ||||| || |||||||||||| |||| || |||||||||||  ||||||||||||||||||||||| ||||||    
T  15180204 ttaaataatgattcgatagaagaaattatacatgtgggggccttgaagaacaaaagaaagtaaaccggaagagatgacatga 15180285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 15161427 - 15161518
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaa 127  Q
    |||||||| ||||| || |||||||||||| |||| || | |||||||||  ||||||||||||||| ||||||| |||||||| |||||||    
T  15161427 ttaaataatgattcgatagaagaaattatacatgtgggagacttgaagaacaaaagaaagtaaaccgaaagagatgacatgacatatttcaa 15161518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 15471981 - 15471900
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatga 117  Q
    |||||||| ||||| || |||||||||||| |||| || |||||||||||  ||||||||||||||||||| ||| ||||||    
T  15471981 ttaaataatgattcgatagaagaaattatacatgtgggggccttgaagaacaaaagaaagtaaaccggaagggatgacatga 15471900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 36 - 102
Target Start/End: Original strand, 12608225 - 12608291
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccg 102  Q
    |||||||||||||| ||  | |||||||||  ||||||||||||||| |||||||||||||||||||    
T  12608225 ttaaataaagattcgataaaggaaattatacctgtaggtgccttgaaaaaggaaagaaagtaaaccg 12608291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 2855468 - 2855533
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||| ||||||||||||  || | ||||||||||  |||||||||||||||||||||||||    
T  2855468 agattcaatagaagaaattatacctgcaagtgccttgaaataggaaagaaagtaaaccggaagaga 2855533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 12913599 - 12913672
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||||||||||||| |||||||| |||  ||  || || |||||||||||||||||||| |||||||||||    
T  12913599 ttaaataaagattcaatagaagaaatgatacctgcgggagctttgaagaaggaaagaaagtagaccggaagaga 12913672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 16478977 - 16479018
Alignment:
Q  68 tgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    |||||| ||||||||||||||||||||||||||||| |||||    
T  16478977 tgtaggggccttgaagaaggaaagaaagtaaaccgggagaga 16479018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 17738949 - 17739014
Alignment:
Q  44 agattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    |||||| || |||||||||||| ||||||| || ||||| ||||||||||||||||  ||||||||    
T  17738949 agattcgatagaagaaattatacatgtaggggctttgaaaaaggaaagaaagtaaaagggaagaga 17739014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 18488424 - 18488383
Alignment:
Q  68 tgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    |||||| ||||||||||||||||||||||||||||| |||||    
T  18488424 tgtaggggccttgaagaaggaaagaaagtaaaccgggagaga 18488383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 126
Target Start/End: Original strand, 3298057 - 3298105
Alignment:
Q  78 ttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttca 126  Q
    ||||| ||||||||||||||||||||||||||  |||||||||| ||||    
T  3298057 ttgaaaaaggaaagaaagtaaaccggaagagaggacatgacaaacttca 3298105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 105
Target Start/End: Complemental strand, 6345498 - 6345468
Alignment:
Q  75 gccttgaagaaggaaagaaagtaaaccggaa 105  Q
    |||||||||||||||||||||||||||||||    
T  6345498 gccttgaagaaggaaagaaagtaaaccggaa 6345468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 32186465 - 32186523
Alignment:
Q  34 tcttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaaga 92  Q
    |||||||||||| |||||||||||| ||||||| ||| || || |||||||| ||||||    
T  32186465 tcttaaataaagtttcaatggaagagattatatctgtcggagctttgaagaaagaaaga 32186523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 10748055 - 10748104
Alignment:
Q  76 ccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttc 125  Q
    |||||||||||||||||||||| |||| |||| | ||||||||| |||||    
T  10748055 ccttgaagaaggaaagaaagtagaccgaaagaaaaaacatgacagatttc 10748104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 36 - 109
Target Start/End: Original strand, 32949 - 33022
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    |||||||||||||  || || ||||||||| ||||||||||||||||||||||||||||||||| | |||||||    
T  32949 ttaaataaagatttgatagaggaaattatacatgtaggtgccttgaagaaggaaagaaagtaaatcagaagaga 33022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 117
Target Start/End: Original strand, 725 - 806
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatga 117  Q
    |||||||||||||| || |||||||||| |  ||| ||  ||||||||||| ||||||||||||||||||||||| ||||||    
T  725 ttaaataaagattcgatagaagaaattaaacttgtggggaccttgaagaagaaaagaaagtaaaccggaagagatgacatga 806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0693 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0693
Description:

Target: scaffold0693; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 285 - 373
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaattt 124  Q
    ||||||| ||||||||| |||||||||| |  || ||| || ||||| |||||||||||||||||| |||||||  ||| |||||||||    
T  285 ttaaatatagattcaatagaagaaattagacctgcaggggctttgaaaaaggaaagaaagtaaaccagaagagaggacaagacaaattt 373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 5973 - 6064
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagagataacatgacaaatttcaa 127  Q
    |||||||||||||  || ||||||||||||  | | || |||||||||||||||||||| ||| ||||||||||| ||| | || |||||||    
T  5973 ttaaataaagatttgatagaagaaattatacctatgggggccttgaagaaggaaagaaaataatccggaagagatgacaggtcagatttcaa 6064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 36 - 109
Target Start/End: Complemental strand, 8277 - 8204
Alignment:
Q  36 ttaaataaagattcaatggaagaaattatatatgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    ||||||| |||||||||||||||||| ||| |||   | || |||||||||||||||||||| || ||||||||    
T  8277 ttaaatatagattcaatggaagaaatgatacatgcgagagcgttgaagaaggaaagaaagtagactggaagaga 8204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 23650 - 23609
Alignment:
Q  68 tgtaggtgccttgaagaaggaaagaaagtaaaccggaagaga 109  Q
    |||||| ||||||||||||||||||||||||||||| |||||    
T  23650 tgtaggggccttgaagaaggaaagaaagtaaaccgggagaga 23609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 79 - 119
Target Start/End: Original strand, 67282 - 67322
Alignment:
Q  79 tgaagaaggaaagaaagtaaaccggaagagataacatgaca 119  Q
    |||| ||||||||||||||||||||||||||  ||||||||    
T  67282 tgaaaaaggaaagaaagtaaaccggaagagaggacatgaca 67322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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