View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4211_low_3 (Length: 515)
Name: NF4211_low_3
Description: NF4211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4211_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 326 - 495
Target Start/End: Original strand, 38097247 - 38097416
Alignment:
| Q |
326 |
attattgatgactctacttagagtcatttatctaattgcaacaacttagaggttgtattcactaggcgacaaactaatgatagtactcctgctttggcac |
425 |
Q |
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| T |
38097247 |
attattgatgactctacttagagtcatttatctaattgcaacaacttagaggttgtattcactaggcgacaaactaatgatagtactcctgctttggcac |
38097346 |
T |
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| Q |
426 |
aaacttctttctcttatgctcctcgggtaattttcattcttctatatatgattgtgccatgaattcgttt |
495 |
Q |
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| T |
38097347 |
aaacttctttctcttatgctcctcggataattttcattcttctatatatgattgtgccatgaattcgttt |
38097416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 152 - 279
Target Start/End: Original strand, 38097020 - 38097152
Alignment:
| Q |
152 |
tctagtctaggtagaatatgtaatgagtacactagcaattataggttgatgcatgtaatattaatttctcttcaaatctcgatt-----tcatcttattt |
246 |
Q |
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| T |
38097020 |
tctagtctaggtagaatatgtaatgagtacactagcaattataggttgatgcatgtaatattaatttcttttcaaatcccgatttcatctcatcttattt |
38097119 |
T |
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| Q |
247 |
agtaaagtgcatttgtgaccttaatgcaagcct |
279 |
Q |
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| T |
38097120 |
agtaaagtgcatttctgaccttaatgcaagcct |
38097152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 38096840 - 38096967
Alignment:
| Q |
1 |
gaggtgaagttaaaggaaacaaaagaggaaaagagggaggcaaaannnnnnnnagtgaaagagaaatgcataccgcttatgaaatcatccaaagagagta |
100 |
Q |
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| T |
38096840 |
gaggtgaagttaaaggaaacaaaagaggaaaagagggaggcaaaaggggg---agtgaaagagaaatgcataccgcttatgaaatcatccaaagagagta |
38096936 |
T |
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| Q |
101 |
ggaaatgatggtgatctggtctggtctggtc |
131 |
Q |
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| T |
38096937 |
ggaaatgatggtgatctggtatggtctggtc |
38096967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 443
Target Start/End: Complemental strand, 6783852 - 6783773
Alignment:
| Q |
364 |
caacaacttagaggttgtattcactaggcgacaaactaatgatagtactcctgctttggcacaaacttctttctcttatg |
443 |
Q |
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| T |
6783852 |
caacaactttcaagttgttttcaccaggcgaaaaactaatgatggagctcatgttttggcacaaacttctatctcttatg |
6783773 |
T |
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